data_4UV8
#
_model_server_result.job_id            FuVH3gY3lQPTYeJubOsXIg 
_model_server_result.datetime_utc      '2024-11-22 12:09:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4uv8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":900}' 
#
_entry.id    4UV8 
#
_exptl.entry_id    4UV8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              1010.879 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[[(2R,3S,4S)-5-[(4aS,10aS)-4a-[(1S)-3-azanylidene-1,4-diphenyl-butyl]-7,8-dimethyl-2,4-bis(oxidanylidene)-5,10a-dihydro-1H-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentoxy]-oxidanyl-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4UV8 
_cell.length_a            119.85 
_cell.length_b            179.21 
_cell.length_c            235.56 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4UV8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C43 H52 N10 O15 P2' 
_chem_comp.formula_weight    1010.879 
_chem_comp.id                D69 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[[(2R,3S,4S)-5-[(4aS,10aS)-4a-[(1S)-3-azanylidene-1,4-diphenyl-butyl]-7,8-dimethyl-2,4-bis(oxidanylidene)-5,10a-dihydro-1H-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentoxy]-oxidanyl-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3P P D69 sing 83 n n 
O5' P D69 sing 84 n n 
P O1P D69 doub 85 n n 
P O2P D69 sing 86 n n 
C10 N1 D69 sing 87 n n 
N1 C2 D69 sing 88 n n 
N1 HN1 D69 sing 89 n n 
N3 C2 D69 sing 90 n n 
C2 O2 D69 doub 91 n n 
C4 N3 D69 sing 92 n n 
N3 HN3 D69 sing 93 n n 
O4 C4 D69 doub 94 n n 
C4X C4 D69 sing 95 n n 
C5X N5 D69 sing 96 n n 
N5 C4X D69 sing 97 n n 
N5 HN5 D69 sing 98 n n 
C7 C6 D69 doub 99 n y 
C6 C5X D69 sing 100 n y 
C6 H6 D69 sing 101 n n 
C7M C7 D69 sing 102 n n 
C7 C8 D69 sing 103 n y 
C8M C8 D69 sing 104 n n 
C8 C9 D69 doub 105 n y 
C9 C9A D69 sing 106 n y 
C9 H9 D69 sing 107 n n 
O1A PA D69 doub 108 n n 
O2A PA D69 sing 109 n n 
PA O5B D69 sing 110 n n 
PA O3P D69 sing 111 n n 
N10 C1' D69 sing 112 n n 
C1' C2' D69 sing 113 n n 
C1' H1' D69 sing 114 n n 
C1' "H1'A" D69 sing 115 n n 
C4X C10 D69 sing 116 n n 
N10 C10 D69 sing 117 n n 
C10 H10 D69 sing 118 n n 
C9A N10 D69 sing 119 n n 
C6A N1A D69 doub 120 n y 
N1A C2A D69 sing 121 n y 
C2B C1B D69 sing 122 n n 
N9A C1B D69 sing 123 n n 
C1B O4B D69 sing 124 n n 
C1B H1B D69 sing 125 n n 
O2' C2' D69 sing 126 n n 
C2' C3' D69 sing 127 n n 
C2' H2' D69 sing 128 n n 
O2' HO2' D69 sing 129 n n 
N3A C2A D69 doub 130 n y 
C2A H2A D69 sing 131 n n 
O2A HO2A D69 sing 132 n n 
O2B C2B D69 sing 133 n n 
C2B C3B D69 sing 134 n n 
C2B H2B D69 sing 135 n n 
O2B HO2B D69 sing 136 n n 
O2P HO2P D69 sing 137 n n 
C3' O3' D69 sing 138 n n 
C3' C4' D69 sing 139 n n 
C3' H3' D69 sing 140 n n 
O3' HO3' D69 sing 141 n n 
C4A N3A D69 sing 142 n y 
C3B O3B D69 sing 143 n n 
C3B C4B D69 sing 144 n n 
C3B H3B D69 sing 145 n n 
O3B HO3B D69 sing 146 n n 
O4' C4' D69 sing 147 n n 
C4' C5' D69 sing 148 n n 
C4' H4' D69 sing 149 n n 
O4' HO4' D69 sing 150 n n 
N9A C4A D69 sing 151 n y 
C5A C4A D69 doub 152 n y 
C4B C5B D69 sing 153 n n 
C4B O4B D69 sing 154 n n 
C4B H4B D69 sing 155 n n 
CAM C4X D69 sing 156 n n 
C5' O5' D69 sing 157 n n 
C5' H5' D69 sing 158 n n 
C5' "H5'A" D69 sing 159 n n 
N7A C5A D69 sing 160 n y 
C5A C6A D69 sing 161 n y 
O5B C5B D69 sing 162 n n 
C5B H5B D69 sing 163 n n 
C5B H5BA D69 sing 164 n n 
C5X C9A D69 doub 165 n y 
N6A C6A D69 sing 166 n n 
N6A HN6A D69 sing 167 n n 
N6A HN6B D69 sing 168 n n 
C8A N7A D69 doub 169 n y 
C7M H7M D69 sing 170 n n 
C7M H7MA D69 sing 171 n n 
C7M H7MB D69 sing 172 n n 
C8A N9A D69 sing 173 n y 
C8A H8A D69 sing 174 n n 
C8M H8M D69 sing 175 n n 
C8M H8MA D69 sing 176 n n 
C8M H8MB D69 sing 177 n n 
NAA CAO D69 doub 178 n n 
NAA HNAA D69 sing 179 n n 
CAE CAB D69 doub 180 n y 
CAB CAD D69 sing 181 n y 
CAB HAB D69 sing 182 n n 
CAF CAC D69 doub 183 n y 
CAC CAG D69 sing 184 n y 
CAC HAC D69 sing 185 n n 
CAD CAH D69 doub 186 n y 
CAD HAD D69 sing 187 n n 
CAE CAI D69 sing 188 n y 
CAE HAE D69 sing 189 n n 
CAJ CAF D69 sing 190 n y 
CAF HAF D69 sing 191 n n 
CAK CAG D69 doub 192 n y 
CAG HAG D69 sing 193 n n 
CAP CAH D69 sing 194 n y 
CAH HAH D69 sing 195 n n 
CAI CAP D69 doub 196 n y 
CAI HAI D69 sing 197 n n 
CAJ CAQ D69 doub 198 n y 
CAJ HAJ D69 sing 199 n n 
CAQ CAK D69 sing 200 n y 
CAK HAK D69 sing 201 n n 
CAM CAL D69 sing 202 n n 
CAO CAL D69 sing 203 n n 
CAL HAL D69 sing 204 n n 
CAL HALA D69 sing 205 n n 
CAP CAM D69 sing 206 n n 
CAM HAM D69 sing 207 n n 
CAO CAN D69 sing 208 n n 
CAN CAQ D69 sing 209 n n 
CAN HAN D69 sing 210 n n 
CAN HANA D69 sing 211 n n 
#
_atom_sites.entry_id                     4UV8 
_atom_sites.fract_transf_matrix[1][1]    0.008344 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00558 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004245 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 D69 A 1 900 900 D69 D69 . 
D 4 HOH A 1 2001 2001 HOH HOH . 
D 4 HOH A 2 2002 2002 HOH HOH . 
D 4 HOH A 3 2003 2003 HOH HOH . 
D 4 HOH A 4 2004 2004 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P D69 . . . C 3 -6.388 65.677 90.915 1 47.92 ? P D69 900 A 1 
HETATM 2 N N1 D69 . . . C 3 -8.136 57.965 86.153 1 68.19 ? N1 D69 900 A 1 
HETATM 3 C C2 D69 . . . C 3 -9.119 57.044 86.331 1 69.39 ? C2 D69 900 A 1 
HETATM 4 O O2 D69 . . . C 3 -9.513 56.741 87.48 1 68.02 ? O2 D69 900 A 1 
HETATM 5 N N3 D69 . . . C 3 -9.665 56.434 85.267 1 69.49 ? N3 D69 900 A 1 
HETATM 6 C C4 D69 . . . C 3 -9.255 56.725 84.023 1 68.96 ? C4 D69 900 A 1 
HETATM 7 O O4 D69 . . . C 3 -9.804 56.144 83.063 1 71.88 ? O4 D69 900 A 1 
HETATM 8 N N5 D69 . . . C 3 -7.869 57.924 82.482 1 67.52 ? N5 D69 900 A 1 
HETATM 9 C C6 D69 . . . C 3 -7.295 59.671 80.994 1 64.47 ? C6 D69 900 A 1 
HETATM 10 C C7 D69 . . . C 3 -6.731 60.921 80.755 1 63.94 ? C7 D69 900 A 1 
HETATM 11 C C8 D69 . . . C 3 -6.123 61.682 81.888 1 64.75 ? C8 D69 900 A 1 
HETATM 12 C C9 D69 . . . C 3 -6.126 61.134 83.171 1 64.7 ? C9 D69 900 A 1 
HETATM 13 P PA D69 . . . C 3 -6.542 67.667 88.863 1 45.61 ? PA D69 900 A 1 
HETATM 14 C C1' D69 . . . C 3 -6.128 59.998 85.852 1 61.1 ? C1' D69 900 A 1 
HETATM 15 C C10 D69 . . . C 3 -7.7 58.281 84.903 1 66.65 ? C10 D69 900 A 1 
HETATM 16 N N10 D69 . . . C 3 -6.713 59.278 84.705 1 64.67 ? N10 D69 900 A 1 
HETATM 17 N N1A D69 . . . C 3 -4.099 77.981 90.505 1 45.45 ? N1A D69 900 A 1 
HETATM 18 O O1A D69 . . . C 3 -5.603 68.105 87.76 1 44.02 ? O1A D69 900 A 1 
HETATM 19 C C1B D69 . . . C 3 -6.034 73.416 88.964 1 46.27 ? C1B D69 900 A 1 
HETATM 20 O O1P D69 . . . C 3 -5.239 65.019 91.64 1 48.03 ? O1P D69 900 A 1 
HETATM 21 C C2' D69 . . . C 3 -7.101 60.941 86.573 1 57.41 ? C2' D69 900 A 1 
HETATM 22 O O2' D69 . . . C 3 -7.859 61.699 85.627 1 55.8 ? O2' D69 900 A 1 
HETATM 23 C C2A D69 . . . C 3 -5.281 77.393 90.784 1 45.05 ? C2A D69 900 A 1 
HETATM 24 O O2A D69 . . . C 3 -7.894 67.072 88.531 1 46.4 ? O2A D69 900 A 1 
HETATM 25 C C2B D69 . . . C 3 -6.369 72.63 87.711 1 45.87 ? C2B D69 900 A 1 
HETATM 26 O O2B D69 . . . C 3 -7.162 73.392 86.797 1 45.84 ? O2B D69 900 A 1 
HETATM 27 O O2P D69 . . . C 3 -7.458 66.395 91.701 1 50.12 ? O2P D69 900 A 1 
HETATM 28 C C3' D69 . . . C 3 -6.343 61.911 87.473 1 56.31 ? C3' D69 900 A 1 
HETATM 29 O O3' D69 . . . C 3 -5.396 61.181 88.257 1 56.73 ? O3' D69 900 A 1 
HETATM 30 N N3A D69 . . . C 3 -5.633 76.192 90.29 1 45.58 ? N3A D69 900 A 1 
HETATM 31 C C3B D69 . . . C 3 -7.131 71.448 88.289 1 45.8 ? C3B D69 900 A 1 
HETATM 32 O O3B D69 . . . C 3 -8.528 71.728 88.358 1 45.56 ? O3B D69 900 A 1 
HETATM 33 O O3P D69 . . . C 3 -5.719 66.69 89.85 1 47.26 ? O3P D69 900 A 1 
HETATM 34 C C4' D69 . . . C 3 -7.226 62.713 88.425 1 54.87 ? C4' D69 900 A 1 
HETATM 35 O O4' D69 . . . C 3 -8.413 63.178 87.767 1 57.12 ? O4' D69 900 A 1 
HETATM 36 C C4A D69 . . . C 3 -4.796 75.496 89.475 1 45.43 ? C4A D69 900 A 1 
HETATM 37 C C4B D69 . . . C 3 -6.637 71.306 89.717 1 45.85 ? C4B D69 900 A 1 
HETATM 38 O O4B D69 . . . C 3 -5.775 72.415 89.951 1 46.68 ? O4B D69 900 A 1 
HETATM 39 C C4X D69 . . . C 3 -7.871 57.249 83.826 1 69.76 ? C4X D69 900 A 1 
HETATM 40 C C5' D69 . . . C 3 -6.43 63.903 88.951 1 52.99 ? C5' D69 900 A 1 
HETATM 41 O O5' D69 . . . C 3 -7.124 64.558 90.016 1 50.94 ? O5' D69 900 A 1 
HETATM 42 C C5A D69 . . . C 3 -3.491 76.073 89.121 1 45.55 ? C5A D69 900 A 1 
HETATM 43 C C5B D69 . . . C 3 -5.88 70.007 89.933 1 47.57 ? C5B D69 900 A 1 
HETATM 44 O O5B D69 . . . C 3 -6.808 68.923 89.838 1 49.13 ? O5B D69 900 A 1 
HETATM 45 C C5X D69 . . . C 3 -7.297 59.129 82.274 1 65.7 ? C5X D69 900 A 1 
HETATM 46 C C6A D69 . . . C 3 -3.173 77.402 89.703 1 44.93 ? C6A D69 900 A 1 
HETATM 47 N N6A D69 . . . C 3 -1.999 78.018 89.438 1 44.27 ? N6A D69 900 A 1 
HETATM 48 N N7A D69 . . . C 3 -2.879 75.181 88.312 1 46.02 ? N7A D69 900 A 1 
HETATM 49 C C7M D69 . . . C 3 -6.746 61.478 79.354 1 62.64 ? C7M D69 900 A 1 
HETATM 50 C C8A D69 . . . C 3 -3.723 74.126 88.159 1 45.89 ? C8A D69 900 A 1 
HETATM 51 C C8M D69 . . . C 3 -5.504 63.04 81.667 1 62.27 ? C8M D69 900 A 1 
HETATM 52 C C9A D69 . . . C 3 -6.689 59.877 83.414 1 64.92 ? C9A D69 900 A 1 
HETATM 53 N N9A D69 . . . C 3 -4.865 74.321 88.849 1 46.04 ? N9A D69 900 A 1 
HETATM 54 N NAA D69 . . . C 3 -4.005 55.555 84.18 1 79.33 ? NAA D69 900 A 1 
HETATM 55 C CAB D69 . . . C 3 -7.041 52.743 81.151 1 86.11 ? CAB D69 900 A 1 
HETATM 56 C CAC D69 . . . C 3 -0.428 52.837 86.56 1 88.19 ? CAC D69 900 A 1 
HETATM 57 C CAD D69 . . . C 3 -7.943 52.81 82.212 1 84.83 ? CAD D69 900 A 1 
HETATM 58 C CAE D69 . . . C 3 -6.103 53.759 80.97 1 86.28 ? CAE D69 900 A 1 
HETATM 59 C CAF D69 . . . C 3 -0.764 53.972 85.82 1 90.59 ? CAF D69 900 A 1 
HETATM 60 C CAG D69 . . . C 3 -1.445 52.008 87.033 1 89.19 ? CAG D69 900 A 1 
HETATM 61 C CAH D69 . . . C 3 -7.897 53.893 83.087 1 84.1 ? CAH D69 900 A 1 
HETATM 62 C CAI D69 . . . C 3 -6.065 54.847 81.843 1 86.87 ? CAI D69 900 A 1 
HETATM 63 C CAJ D69 . . . C 3 -2.105 54.276 85.556 1 88.03 ? CAJ D69 900 A 1 
HETATM 64 C CAK D69 . . . C 3 -2.785 52.314 86.769 1 88.38 ? CAK D69 900 A 1 
HETATM 65 C CAL D69 . . . C 3 -6.303 55.533 85.131 1 78.49 ? CAL D69 900 A 1 
HETATM 66 C CAM D69 . . . C 3 -6.919 56.018 83.796 1 78.43 ? CAM D69 900 A 1 
HETATM 67 C CAN D69 . . . C 3 -4.505 53.693 85.798 1 84.03 ? CAN D69 900 A 1 
HETATM 68 C CAO D69 . . . C 3 -4.882 54.96 84.995 1 79.58 ? CAO D69 900 A 1 
HETATM 69 C CAP D69 . . . C 3 -6.964 54.923 82.911 1 84.15 ? CAP D69 900 A 1 
HETATM 70 C CAQ D69 . . . C 3 -3.132 53.451 86.029 1 87.54 ? CAQ D69 900 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           70 
#