data_4UV9
#
_model_server_result.job_id            WeDzL7sV3l6KnpQr-4sqQw 
_model_server_result.datetime_utc      '2024-12-27 11:56:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4uv9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":900}' 
#
_entry.id    4UV9 
#
_exptl.entry_id    4UV9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              948.809 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)-2,3,4-trihydroxy-5-[(4aS,10aS)-4a-[(1S,3E)-3-imino-1-phenylpentyl]-7,8-dimethyl-2,4-dioxo-1,3,4,4a,5,10a-hexahydrobenzo[g]pteridin-10(2H)-yl]pentyl dihydrogen diphosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4UV9 
_cell.length_a            118.3 
_cell.length_b            178.56 
_cell.length_c            234.02 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4UV9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C38 H50 N10 O15 P2' 
_chem_comp.formula_weight    948.809 
_chem_comp.id                D70 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)-2,3,4-trihydroxy-5-[(4aS,10aS)-4a-[(1S,3E)-3-imino-1-phenylpentyl]-7,8-dimethyl-2,4-dioxo-1,3,4,4a,5,10a-hexahydrobenzo[g]pteridin-10(2H)-yl]pentyl dihydrogen diphosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A D70 sing 83 n n 
PA O2A D70 doub 84 n n 
PA O5B D70 sing 85 n n 
PA O3P D70 sing 86 n n 
O5B C5B D70 sing 87 n n 
C5B C4B D70 sing 88 n n 
C4B O4B D70 sing 89 n n 
C4B C3B D70 sing 90 n n 
O4B C1B D70 sing 91 n n 
C3B O3B D70 sing 92 n n 
C3B C2B D70 sing 93 n n 
C2B O2B D70 sing 94 n n 
C2B C1B D70 sing 95 n n 
C1B N9A D70 sing 96 n n 
N9A C8A D70 sing 97 n y 
N9A C4A D70 sing 98 n y 
C8A N7A D70 doub 99 n y 
N7A C5A D70 sing 100 n y 
C5A C6A D70 doub 101 n y 
C5A C4A D70 sing 102 n y 
C6A N6A D70 sing 103 n n 
C6A N1A D70 sing 104 n y 
N1A C2A D70 doub 105 n y 
C2A N3A D70 sing 106 n y 
N3A C4A D70 doub 107 n y 
N1 C2 D70 sing 108 n n 
N1 C10 D70 sing 109 n n 
C2 O2 D70 doub 110 n n 
C2 N3 D70 sing 111 n n 
N3 C4 D70 sing 112 n n 
C4 O4 D70 doub 113 n n 
C4 C4X D70 sing 114 n n 
C4X N5 D70 sing 115 n n 
C4X C10 D70 sing 116 n n 
C4X CAM D70 sing 117 n n 
N5 C5X D70 sing 118 n n 
C5X C6 D70 sing 119 n y 
C5X C9A D70 doub 120 n y 
C6 C7 D70 doub 121 n y 
C7 C7M D70 sing 122 n n 
C7 C8 D70 sing 123 n y 
C8 C8M D70 sing 124 n n 
C8 C9 D70 doub 125 n y 
C9 C9A D70 sing 126 n y 
C9A N10 D70 sing 127 n n 
N10 C10 D70 sing 128 n n 
N10 C1' D70 sing 129 n n 
C1' C2' D70 sing 130 n n 
C2' O2' D70 sing 131 n n 
C2' C3' D70 sing 132 n n 
C3' O3' D70 sing 133 n n 
C3' C4' D70 sing 134 n n 
C4' O4' D70 sing 135 n n 
C4' C5' D70 sing 136 n n 
C5' O5' D70 sing 137 n n 
O5' P D70 sing 138 n n 
P O1P D70 doub 139 n n 
P O2P D70 sing 140 n n 
P O3P D70 sing 141 n n 
CAH CAD D70 sing 142 n y 
CAH CAP D70 doub 143 n y 
CAD CAB D70 doub 144 n y 
CAB CAE D70 sing 145 n y 
CAE CAI D70 doub 146 n y 
CAI CAP D70 sing 147 n y 
CAP CAM D70 sing 148 n n 
CAM CAL D70 sing 149 n n 
CAL CAO D70 sing 150 n n 
CAO NAA D70 doub 151 n n 
CAO CAN D70 sing 152 n n 
CAQ CAN D70 sing 153 n n 
O1A H1A D70 sing 154 n n 
C5B H5B1 D70 sing 155 n n 
C5B H5B2 D70 sing 156 n n 
C4B H4B D70 sing 157 n n 
C3B H3B D70 sing 158 n n 
C1B H1B D70 sing 159 n n 
O3B HA D70 sing 160 n n 
C2B H2B D70 sing 161 n n 
O2B HB D70 sing 162 n n 
C8A H8A D70 sing 163 n n 
N6A H6A1 D70 sing 164 n n 
N6A H6A2 D70 sing 165 n n 
C2A H2A D70 sing 166 n n 
N1 H1 D70 sing 167 n n 
C10 H10 D70 sing 168 n n 
N3 H3 D70 sing 169 n n 
N5 H5 D70 sing 170 n n 
CAM HAM D70 sing 171 n n 
C6 H6 D70 sing 172 n n 
C7M H7M1 D70 sing 173 n n 
C7M H7M2 D70 sing 174 n n 
C7M H7M3 D70 sing 175 n n 
C8M H8M1 D70 sing 176 n n 
C8M H8M2 D70 sing 177 n n 
C8M H8M3 D70 sing 178 n n 
C9 H9 D70 sing 179 n n 
C1' "H1'1" D70 sing 180 n n 
C1' "H1'2" D70 sing 181 n n 
C2' H2' D70 sing 182 n n 
O2' HC D70 sing 183 n n 
C3' H3' D70 sing 184 n n 
O3' HD D70 sing 185 n n 
C4' H4' D70 sing 186 n n 
O4' HE D70 sing 187 n n 
C5' "H5'1" D70 sing 188 n n 
C5' "H5'2" D70 sing 189 n n 
O2P H2P D70 sing 190 n n 
CAH HAH D70 sing 191 n n 
CAD HAD D70 sing 192 n n 
CAB HAB D70 sing 193 n n 
CAE HAE D70 sing 194 n n 
CAI HAI D70 sing 195 n n 
CAL HAL1 D70 sing 196 n n 
CAL HAL2 D70 sing 197 n n 
NAA HAA D70 sing 198 n n 
CAN HAN1 D70 sing 199 n n 
CAN HAN2 D70 sing 200 n n 
CAQ HAQ1 D70 sing 201 n n 
CAQ HAQ2 D70 sing 202 n n 
CAQ HAQ3 D70 sing 203 n n 
#
_atom_sites.entry_id                     4UV9 
_atom_sites.fract_transf_matrix[1][1]    0.008453 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0056 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004273 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           D70 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      900 
_pdbx_nonpoly_scheme.auth_seq_num     900 
_pdbx_nonpoly_scheme.pdb_mon_id       D70 
_pdbx_nonpoly_scheme.auth_mon_id      D70 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA D70 . . . C 3 -6.644 67.457 88.317 1 42.79 ? PA D70 900 A 1 
HETATM 2 O O1A D70 . . . C 3 -5.722 67.869 87.184 1 42.02 ? O1A D70 900 A 1 
HETATM 3 O O2A D70 . . . C 3 -7.972 66.801 88.017 1 43.48 ? O2A D70 900 A 1 
HETATM 4 O O5B D70 . . . C 3 -6.971 68.74 89.235 1 43.15 ? O5B D70 900 A 1 
HETATM 5 C C5B D70 . . . C 3 -6.03 69.805 89.372 1 42.03 ? C5B D70 900 A 1 
HETATM 6 C C4B D70 . . . C 3 -6.722 71.132 89.102 1 40.55 ? C4B D70 900 A 1 
HETATM 7 O O4B D70 . . . C 3 -5.825 72.215 89.342 1 39.6 ? O4B D70 900 A 1 
HETATM 8 C C3B D70 . . . C 3 -7.176 71.269 87.658 1 40.17 ? C3B D70 900 A 1 
HETATM 9 O O3B D70 . . . C 3 -8.574 71.563 87.675 1 40.15 ? O3B D70 900 A 1 
HETATM 10 C C2B D70 . . . C 3 -6.385 72.44 87.104 1 39.42 ? C2B D70 900 A 1 
HETATM 11 O O2B D70 . . . C 3 -7.151 73.214 86.181 1 39.33 ? O2B D70 900 A 1 
HETATM 12 C C1B D70 . . . C 3 -6.069 73.219 88.361 1 39.08 ? C1B D70 900 A 1 
HETATM 13 N N9A D70 . . . C 3 -4.883 74.092 88.276 1 39.06 ? N9A D70 900 A 1 
HETATM 14 C C8A D70 . . . C 3 -3.712 73.85 87.649 1 39.64 ? C8A D70 900 A 1 
HETATM 15 N N7A D70 . . . C 3 -2.851 74.89 87.81 1 40.09 ? N7A D70 900 A 1 
HETATM 16 C C5A D70 . . . C 3 -3.485 75.812 88.564 1 39.98 ? C5A D70 900 A 1 
HETATM 17 C C6A D70 . . . C 3 -3.161 77.145 89.12 1 39.79 ? C6A D70 900 A 1 
HETATM 18 N N6A D70 . . . C 3 -1.954 77.712 88.884 1 39.58 ? N6A D70 900 A 1 
HETATM 19 N N1A D70 . . . C 3 -4.114 77.766 89.861 1 40 ? N1A D70 900 A 1 
HETATM 20 C C2A D70 . . . C 3 -5.325 77.213 90.102 1 38.94 ? C2A D70 900 A 1 
HETATM 21 N N3A D70 . . . C 3 -5.686 76.008 89.628 1 38.25 ? N3A D70 900 A 1 
HETATM 22 C C4A D70 . . . C 3 -4.823 75.279 88.872 1 39.16 ? C4A D70 900 A 1 
HETATM 23 N N1 D70 . . . C 3 -8.516 57.986 85.574 1 57.46 ? N1 D70 900 A 1 
HETATM 24 C C2 D70 . . . C 3 -9.467 57.024 85.718 1 57.42 ? C2 D70 900 A 1 
HETATM 25 O O2 D70 . . . C 3 -9.905 56.728 86.856 1 55.33 ? O2 D70 900 A 1 
HETATM 26 N N3 D70 . . . C 3 -9.966 56.402 84.634 1 58.21 ? N3 D70 900 A 1 
HETATM 27 C C4 D70 . . . C 3 -9.52 56.69 83.399 1 57.59 ? C4 D70 900 A 1 
HETATM 28 O O4 D70 . . . C 3 -10.012 56.091 82.413 1 57.52 ? O4 D70 900 A 1 
HETATM 29 C C4X D70 . . . C 3 -8.128 57.211 83.262 1 58.76 ? C4X D70 900 A 1 
HETATM 30 N N5 D70 . . . C 3 -8.107 57.874 81.919 1 59.93 ? N5 D70 900 A 1 
HETATM 31 C C5X D70 . . . C 3 -7.493 59.054 81.694 1 59.19 ? C5X D70 900 A 1 
HETATM 32 C C6 D70 . . . C 3 -7.419 59.551 80.395 1 59.1 ? C6 D70 900 A 1 
HETATM 33 C C7 D70 . . . C 3 -6.804 60.771 80.138 1 58.86 ? C7 D70 900 A 1 
HETATM 34 C C7M D70 . . . C 3 -6.739 61.282 78.72 1 57.92 ? C7M D70 900 A 1 
HETATM 35 C C8 D70 . . . C 3 -6.219 61.546 81.273 1 59.75 ? C8 D70 900 A 1 
HETATM 36 C C8M D70 . . . C 3 -5.549 62.873 81.029 1 59.23 ? C8M D70 900 A 1 
HETATM 37 C C9 D70 . . . C 3 -6.294 61.046 82.575 1 59.26 ? C9 D70 900 A 1 
HETATM 38 C C9A D70 . . . C 3 -6.914 59.82 82.834 1 58.41 ? C9A D70 900 A 1 
HETATM 39 N N10 D70 . . . C 3 -7.019 59.268 84.137 1 56.77 ? N10 D70 900 A 1 
HETATM 40 C C10 D70 . . . C 3 -8.01 58.268 84.332 1 57.95 ? C10 D70 900 A 1 
HETATM 41 C C1' D70 . . . C 3 -6.336 59.919 85.27 1 53 ? C1' D70 900 A 1 
HETATM 42 C C2' D70 . . . C 3 -7.271 60.854 86.037 1 51.18 ? C2' D70 900 A 1 
HETATM 43 O O2' D70 . . . C 3 -7.999 61.667 85.115 1 51.17 ? O2' D70 900 A 1 
HETATM 44 C C3' D70 . . . C 3 -6.493 61.764 86.98 1 49.93 ? C3' D70 900 A 1 
HETATM 45 O O3' D70 . . . C 3 -5.617 60.97 87.783 1 50.66 ? O3' D70 900 A 1 
HETATM 46 C C4' D70 . . . C 3 -7.379 62.577 87.915 1 48.78 ? C4' D70 900 A 1 
HETATM 47 O O4' D70 . . . C 3 -8.534 63.084 87.232 1 48.64 ? O4' D70 900 A 1 
HETATM 48 C C5' D70 . . . C 3 -6.554 63.731 88.472 1 48.45 ? C5' D70 900 A 1 
HETATM 49 O O5' D70 . . . C 3 -7.25 64.425 89.511 1 46.81 ? O5' D70 900 A 1 
HETATM 50 P P D70 . . . C 3 -6.47 65.522 90.398 1 44.92 ? P D70 900 A 1 
HETATM 51 O O1P D70 . . . C 3 -5.307 64.842 91.084 1 44.69 ? O1P D70 900 A 1 
HETATM 52 O O2P D70 . . . C 3 -7.513 66.258 91.211 1 45.57 ? O2P D70 900 A 1 
HETATM 53 O O3P D70 . . . C 3 -5.799 66.527 89.327 1 43.61 ? O3P D70 900 A 1 
HETATM 54 C CAH D70 . . . C 3 -8.056 53.744 82.857 1 64.37 ? CAH D70 900 A 1 
HETATM 55 C CAD D70 . . . C 3 -8.132 52.604 82.057 1 63.68 ? CAD D70 900 A 1 
HETATM 56 C CAB D70 . . . C 3 -7.377 52.536 80.887 1 64.34 ? CAB D70 900 A 1 
HETATM 57 C CAE D70 . . . C 3 -6.556 53.604 80.523 1 65.65 ? CAE D70 900 A 1 
HETATM 58 C CAI D70 . . . C 3 -6.487 54.747 81.32 1 66.45 ? CAI D70 900 A 1 
HETATM 59 C CAP D70 . . . C 3 -7.238 54.826 82.495 1 64.85 ? CAP D70 900 A 1 
HETATM 60 C CAM D70 . . . C 3 -7.167 55.984 83.298 1 61.81 ? CAM D70 900 A 1 
HETATM 61 C CAL D70 . . . C 3 -6.448 55.608 84.614 1 60.53 ? CAL D70 900 A 1 
HETATM 62 C CAO D70 . . . C 3 -5.042 55.031 84.386 1 59.04 ? CAO D70 900 A 1 
HETATM 63 N NAA D70 . . . C 3 -4.199 55.63 83.544 1 59.56 ? NAA D70 900 A 1 
HETATM 64 C CAN D70 . . . C 3 -4.582 53.784 85.14 1 59.11 ? CAN D70 900 A 1 
HETATM 65 C CAQ D70 . . . C 3 -3.354 54.033 85.747 1 57.02 ? CAQ D70 900 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           65 
#