data_4UVA
#
_model_server_result.job_id            kXwzjdKqn26OTtJ_hK6KQA 
_model_server_result.datetime_utc      '2024-11-05 04:50:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4uva 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":900}' 
#
_entry.id    4UVA 
#
_exptl.entry_id    4UVA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              932.767 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)-2,3,4-trihydroxy-5-[(4aS)-4a-[(1S,3E)-3-imino-1-phenylbutyl]-7,8-dimethyl-2,4-dioxo-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]pentyl dihydrogen diphosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4UVA 
_cell.length_a            118.97 
_cell.length_b            179.91 
_cell.length_c            234.55 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4UVA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C37 H46 N10 O15 P2' 
_chem_comp.formula_weight    932.767 
_chem_comp.id                D73 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)-2,3,4-trihydroxy-5-[(4aS)-4a-[(1S,3E)-3-imino-1-phenylbutyl]-7,8-dimethyl-2,4-dioxo-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]pentyl dihydrogen diphosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P D73 sing 83 n n 
P O2P D73 doub 84 n n 
P O3P D73 sing 85 n n 
P O5' D73 sing 86 n n 
N1 C2 D73 sing 87 n n 
N1 C10 D73 doub 88 n n 
C2 O2 D73 doub 89 n n 
C2 N3 D73 sing 90 n n 
N3 C4 D73 sing 91 n n 
C4 O4 D73 doub 92 n n 
C4 C4X D73 sing 93 n n 
N5 C4X D73 sing 94 n n 
N5 C5X D73 sing 95 n n 
C6 C7 D73 doub 96 n y 
C6 C5X D73 sing 97 n y 
C7 C8 D73 sing 98 n y 
C7 C7M D73 sing 99 n n 
C8 C9 D73 doub 100 n y 
C8 C8M D73 sing 101 n n 
C9 C9A D73 sing 102 n y 
PA O1A D73 sing 103 n n 
PA O2A D73 doub 104 n n 
PA O3P D73 sing 105 n n 
PA O5B D73 sing 106 n n 
C1' N10 D73 sing 107 n n 
C1' C2' D73 sing 108 n n 
C10 N10 D73 sing 109 n n 
C10 C4X D73 sing 110 n n 
N10 C9A D73 sing 111 n n 
N1A C2A D73 doub 112 n y 
N1A C6A D73 sing 113 n y 
C1B C2B D73 sing 114 n n 
C1B O4B D73 sing 115 n n 
C1B N9A D73 sing 116 n n 
C2' O2' D73 sing 117 n n 
C2' C3' D73 sing 118 n n 
C2A N3A D73 sing 119 n y 
C2B O2B D73 sing 120 n n 
C2B C3B D73 sing 121 n n 
C3' O3' D73 sing 122 n n 
C3' C4' D73 sing 123 n n 
N3A C4A D73 doub 124 n y 
C3B O3B D73 sing 125 n n 
C3B C4B D73 sing 126 n n 
C4' O4' D73 sing 127 n n 
C4' C5' D73 sing 128 n n 
C4A C5A D73 sing 129 n y 
C4A N9A D73 sing 130 n y 
C4B O4B D73 sing 131 n n 
C4B C5B D73 sing 132 n n 
C4X CAM D73 sing 133 n n 
C5' O5' D73 sing 134 n n 
C5A C6A D73 doub 135 n y 
C5A N7A D73 sing 136 n y 
C5B O5B D73 sing 137 n n 
C5X C9A D73 doub 138 n y 
C6A N6A D73 sing 139 n n 
N7A C8A D73 doub 140 n y 
C8A N9A D73 sing 141 n y 
NAA CAO D73 doub 142 n n 
CAB CAD D73 doub 143 n y 
CAB CAE D73 sing 144 n y 
CAD CAH D73 sing 145 n y 
CAE CAI D73 doub 146 n y 
CAH CAP D73 doub 147 n y 
CAI CAP D73 sing 148 n y 
CAL CAM D73 sing 149 n n 
CAL CAO D73 sing 150 n n 
CAM CAP D73 sing 151 n n 
CAN CAO D73 sing 152 n n 
N3 HN3 D73 sing 153 n n 
N5 HN5 D73 sing 154 n n 
C6 H6 D73 sing 155 n n 
C9 H9 D73 sing 156 n n 
C1' H1' D73 sing 157 n n 
C1' "H1'A" D73 sing 158 n n 
O1A HO1A D73 sing 159 n n 
C1B H1B D73 sing 160 n n 
O1P HO1P D73 sing 161 n n 
C2' H2' D73 sing 162 n n 
O2' HO2' D73 sing 163 n n 
C2A H2A D73 sing 164 n n 
C2B H2B D73 sing 165 n n 
O2B HO2B D73 sing 166 n n 
C3' H3' D73 sing 167 n n 
O3' HO3' D73 sing 168 n n 
C3B H3B D73 sing 169 n n 
O3B HO3B D73 sing 170 n n 
C4' H4' D73 sing 171 n n 
O4' HO4' D73 sing 172 n n 
C4B H4B D73 sing 173 n n 
C5' H5' D73 sing 174 n n 
C5' "H5'A" D73 sing 175 n n 
C5B H5B D73 sing 176 n n 
C5B H5BA D73 sing 177 n n 
N6A HN6A D73 sing 178 n n 
N6A HN6B D73 sing 179 n n 
C7M H7M D73 sing 180 n n 
C7M H7MA D73 sing 181 n n 
C7M H7MB D73 sing 182 n n 
C8A H8A D73 sing 183 n n 
C8M H8M D73 sing 184 n n 
C8M H8MA D73 sing 185 n n 
C8M H8MB D73 sing 186 n n 
NAA HNAA D73 sing 187 n n 
CAB HAB D73 sing 188 n n 
CAD HAD D73 sing 189 n n 
CAE HAE D73 sing 190 n n 
CAH HAH D73 sing 191 n n 
CAI HAI D73 sing 192 n n 
CAL HAL D73 sing 193 n n 
CAL HALA D73 sing 194 n n 
CAM HAM D73 sing 195 n n 
CAN HAN D73 sing 196 n n 
CAN HANA D73 sing 197 n n 
CAN HANB D73 sing 198 n n 
#
_atom_sites.entry_id                     4UVA 
_atom_sites.fract_transf_matrix[1][1]    0.008405 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005558 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004263 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 D73 A 1 900 900 D73 D73 . 
D 4 HOH A 1 2001 2001 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P D73 . . . C 3 -6.392 66.157 90.458 1 49.16 ? P D73 900 A 1 
HETATM 2 N N1 D73 . . . C 3 -8.371 58.503 85.648 1 68.67 ? N1 D73 900 A 1 
HETATM 3 C C2 D73 . . . C 3 -9.328 57.548 85.798 1 69.38 ? C2 D73 900 A 1 
HETATM 4 O O2 D73 . . . C 3 -9.769 57.25 86.931 1 68.89 ? O2 D73 900 A 1 
HETATM 5 N N3 D73 . . . C 3 -9.823 56.918 84.723 1 69.16 ? N3 D73 900 A 1 
HETATM 6 C C4 D73 . . . C 3 -9.373 57.2 83.492 1 68.68 ? C4 D73 900 A 1 
HETATM 7 O O4 D73 . . . C 3 -9.876 56.594 82.52 1 71.63 ? O4 D73 900 A 1 
HETATM 8 N N5 D73 . . . C 3 -7.958 58.389 81.997 1 66.87 ? N5 D73 900 A 1 
HETATM 9 C C6 D73 . . . C 3 -7.346 60.113 80.496 1 66.32 ? C6 D73 900 A 1 
HETATM 10 C C7 D73 . . . C 3 -6.773 61.359 80.26 1 66.95 ? C7 D73 900 A 1 
HETATM 11 C C8 D73 . . . C 3 -6.202 62.138 81.398 1 67.91 ? C8 D73 900 A 1 
HETATM 12 C C9 D73 . . . C 3 -6.245 61.611 82.687 1 67.65 ? C9 D73 900 A 1 
HETATM 13 P PA D73 . . . C 3 -6.583 68.143 88.397 1 47.21 ? PA D73 900 A 1 
HETATM 14 C C1' D73 . . . C 3 -6.254 60.467 85.373 1 61.99 ? C1' D73 900 A 1 
HETATM 15 C C10 D73 . . . C 3 -7.873 58.786 84.41 1 67.45 ? C10 D73 900 A 1 
HETATM 16 N N10 D73 . . . C 3 -6.887 59.789 84.227 1 65.65 ? N10 D73 900 A 1 
HETATM 17 N N1A D73 . . . C 3 -4.005 78.422 89.987 1 43.98 ? N1A D73 900 A 1 
HETATM 18 O O1A D73 . . . C 3 -5.613 68.586 87.321 1 45.69 ? O1A D73 900 A 1 
HETATM 19 C C1B D73 . . . C 3 -6.012 73.863 88.509 1 47.18 ? C1B D73 900 A 1 
HETATM 20 O O1P D73 . . . C 3 -5.22 65.522 91.163 1 48.83 ? O1P D73 900 A 1 
HETATM 21 C C2' D73 . . . C 3 -7.185 61.449 86.096 1 58.71 ? C2' D73 900 A 1 
HETATM 22 O O2' D73 . . . C 3 -7.854 62.282 85.147 1 58.19 ? O2' D73 900 A 1 
HETATM 23 C C2A D73 . . . C 3 -5.195 77.854 90.281 1 44.1 ? C2A D73 900 A 1 
HETATM 24 O O2A D73 . . . C 3 -7.906 67.503 88.031 1 47.69 ? O2A D73 900 A 1 
HETATM 25 C C2B D73 . . . C 3 -6.328 73.074 87.251 1 46.9 ? C2B D73 900 A 1 
HETATM 26 O O2B D73 . . . C 3 -7.089 73.846 86.318 1 47.74 ? O2B D73 900 A 1 
HETATM 27 O O2P D73 . . . C 3 -7.48 66.834 91.255 1 50.92 ? O2P D73 900 A 1 
HETATM 28 C C3' D73 . . . C 3 -6.402 62.334 87.062 1 57.19 ? C3' D73 900 A 1 
HETATM 29 O O3' D73 . . . C 3 -5.581 61.507 87.888 1 56.46 ? O3' D73 900 A 1 
HETATM 30 N N3A D73 . . . C 3 -5.569 76.652 89.808 1 45.02 ? N3A D73 900 A 1 
HETATM 31 C C3B D73 . . . C 3 -7.108 71.894 87.805 1 46.15 ? C3B D73 900 A 1 
HETATM 32 O O3B D73 . . . C 3 -8.509 72.161 87.79 1 44.55 ? O3B D73 900 A 1 
HETATM 33 O O3P D73 . . . C 3 -5.751 67.195 89.403 1 48.94 ? O3P D73 900 A 1 
HETATM 34 C C4' D73 . . . C 3 -7.263 63.194 87.986 1 57.03 ? C4' D73 900 A 1 
HETATM 35 O O4' D73 . . . C 3 -8.456 63.665 87.339 1 59.26 ? O4' D73 900 A 1 
HETATM 36 C C4A D73 . . . C 3 -4.748 75.934 88.994 1 44.98 ? C4A D73 900 A 1 
HETATM 37 C C4B D73 . . . C 3 -6.675 71.776 89.257 1 46.77 ? C4B D73 900 A 1 
HETATM 38 O O4B D73 . . . C 3 -5.79 72.867 89.511 1 47.75 ? O4B D73 900 A 1 
HETATM 39 C C4X D73 . . . C 3 -7.986 57.73 83.346 1 68.81 ? C4X D73 900 A 1 
HETATM 40 C C5' D73 . . . C 3 -6.44 64.381 88.481 1 55.72 ? C5' D73 900 A 1 
HETATM 41 O O5' D73 . . . C 3 -7.119 65.037 89.554 1 53.13 ? O5' D73 900 A 1 
HETATM 42 C C5A D73 . . . C 3 -3.435 76.489 88.623 1 45.42 ? C5A D73 900 A 1 
HETATM 43 C C5B D73 . . . C 3 -5.976 70.457 89.541 1 47.92 ? C5B D73 900 A 1 
HETATM 44 O O5B D73 . . . C 3 -6.919 69.4 89.349 1 49.04 ? O5B D73 900 A 1 
HETATM 45 C C5X D73 . . . C 3 -7.387 59.592 81.785 1 66.24 ? C5X D73 900 A 1 
HETATM 46 C C6A D73 . . . C 3 -3.094 77.822 89.188 1 44.03 ? C6A D73 900 A 1 
HETATM 47 N N6A D73 . . . C 3 -1.912 78.417 88.908 1 43.15 ? N6A D73 900 A 1 
HETATM 48 N N7A D73 . . . C 3 -2.84 75.58 87.82 1 45.19 ? N7A D73 900 A 1 
HETATM 49 C C7M D73 . . . C 3 -6.739 61.901 78.854 1 67.34 ? C7M D73 900 A 1 
HETATM 50 C C8A D73 . . . C 3 -3.701 74.537 87.69 1 45.23 ? C8A D73 900 A 1 
HETATM 51 C C8M D73 . . . C 3 -5.577 63.494 81.178 1 66.73 ? C8M D73 900 A 1 
HETATM 52 C C9A D73 . . . C 3 -6.815 60.36 82.929 1 66.8 ? C9A D73 900 A 1 
HETATM 53 N N9A D73 . . . C 3 -4.833 74.754 88.387 1 45.45 ? N9A D73 900 A 1 
HETATM 54 N NAA D73 . . . C 3 -4.085 56.123 83.733 1 67.3 ? NAA D73 900 A 1 
HETATM 55 C CAB D73 . . . C 3 -7.08 53.169 80.771 1 80.3 ? CAB D73 900 A 1 
HETATM 56 C CAD D73 . . . C 3 -7.93 53.205 81.874 1 78.74 ? CAD D73 900 A 1 
HETATM 57 C CAE D73 . . . C 3 -6.215 54.235 80.522 1 81.92 ? CAE D73 900 A 1 
HETATM 58 C CAH D73 . . . C 3 -7.906 54.309 82.724 1 79.19 ? CAH D73 900 A 1 
HETATM 59 C CAI D73 . . . C 3 -6.196 55.342 81.371 1 82.88 ? CAI D73 900 A 1 
HETATM 60 C CAL D73 . . . C 3 -6.396 56.059 84.683 1 71.29 ? CAL D73 900 A 1 
HETATM 61 C CAM D73 . . . C 3 -7.022 56.506 83.341 1 73.35 ? CAM D73 900 A 1 
HETATM 62 C CAN D73 . . . C 3 -4.487 54.357 85.42 1 67.01 ? CAN D73 900 A 1 
HETATM 63 C CAO D73 . . . C 3 -4.954 55.532 84.556 1 68.22 ? CAO D73 900 A 1 
HETATM 64 C CAP D73 . . . C 3 -7.044 55.388 82.481 1 79.42 ? CAP D73 900 A 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           64 
#