data_4UVB
#
_model_server_result.job_id            O70Ppu-m7cYK_A0lboO9Pg 
_model_server_result.datetime_utc      '2024-12-26 21:39:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4uvb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":900}' 
#
_entry.id    4UVB 
#
_exptl.entry_id    4UVB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              934.783 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)-5-[(1R,3S,3aS,7aS)-1-amino-1,10,11-trimethyl-4,6-dioxo-3-phenyl-2,3,5,6,7,7a-hexahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]-2,3,4-trihydroxypentyl dihydrogen diphosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4UVB 
_cell.length_a            119.16 
_cell.length_b            180.04 
_cell.length_c            234.58 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4UVB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C37 H48 N10 O15 P2' 
_chem_comp.formula_weight    934.783 
_chem_comp.id                D51 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)-5-[(1R,3S,3aS,7aS)-1-amino-1,10,11-trimethyl-4,6-dioxo-3-phenyl-2,3,5,6,7,7a-hexahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]-2,3,4-trihydroxypentyl dihydrogen diphosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3P P D51 sing 83 n n 
O5' P D51 sing 84 n n 
P O1P D51 doub 85 n n 
P O2P D51 sing 86 n n 
C10 N1 D51 sing 87 n n 
N1 C2 D51 sing 88 n n 
N1 HN1 D51 sing 89 n n 
N3 C2 D51 sing 90 n n 
C2 O2 D51 doub 91 n n 
C4 N3 D51 sing 92 n n 
N3 HN3 D51 sing 93 n n 
O4 C4 D51 doub 94 n n 
C4X C4 D51 sing 95 n n 
CAO N5 D51 sing 96 n n 
C5X N5 D51 sing 97 n n 
N5 C4X D51 sing 98 n n 
C7 C6 D51 doub 99 n y 
C6 C5X D51 sing 100 n y 
C6 H6 D51 sing 101 n n 
C7M C7 D51 sing 102 n n 
C7 C8 D51 sing 103 n y 
C8M C8 D51 sing 104 n n 
C8 C9 D51 doub 105 n y 
C9 C9A D51 sing 106 n y 
C9 H9 D51 sing 107 n n 
O1A PA D51 doub 108 n n 
O2A PA D51 sing 109 n n 
PA O3P D51 sing 110 n n 
PA O5B D51 sing 111 n n 
N10 C1' D51 sing 112 n n 
C1' C2' D51 sing 113 n n 
C1' H1' D51 sing 114 n n 
C1' "H1'A" D51 sing 115 n n 
C4X C10 D51 sing 116 n n 
N10 C10 D51 sing 117 n n 
C10 H10 D51 sing 118 n n 
C9A N10 D51 sing 119 n n 
C6A N1A D51 doub 120 n y 
N1A C2A D51 sing 121 n y 
C2B C1B D51 sing 122 n n 
N9A C1B D51 sing 123 n n 
C1B O4B D51 sing 124 n n 
C1B H1B D51 sing 125 n n 
O2' C2' D51 sing 126 n n 
C2' C3' D51 sing 127 n n 
C2' H2' D51 sing 128 n n 
O2' HO2' D51 sing 129 n n 
N3A C2A D51 doub 130 n y 
C2A H2A D51 sing 131 n n 
O2A HO2A D51 sing 132 n n 
O2B C2B D51 sing 133 n n 
C2B C3B D51 sing 134 n n 
C2B H2B D51 sing 135 n n 
O2B HO2B D51 sing 136 n n 
O2P HO2P D51 sing 137 n n 
C3' O3' D51 sing 138 n n 
C3' C4' D51 sing 139 n n 
C3' H3' D51 sing 140 n n 
O3' HO3' D51 sing 141 n n 
C4A N3A D51 sing 142 n y 
C3B O3B D51 sing 143 n n 
C3B C4B D51 sing 144 n n 
C3B H3B D51 sing 145 n n 
O3B HO3B D51 sing 146 n n 
O4' C4' D51 sing 147 n n 
C4' C5' D51 sing 148 n n 
C4' H4' D51 sing 149 n n 
O4' HO4' D51 sing 150 n n 
N9A C4A D51 sing 151 n y 
C5A C4A D51 doub 152 n y 
C4B O4B D51 sing 153 n n 
C4B C5B D51 sing 154 n n 
C4B H4B D51 sing 155 n n 
CAM C4X D51 sing 156 n n 
C5' O5' D51 sing 157 n n 
C5' H5' D51 sing 158 n n 
C5' "H5'A" D51 sing 159 n n 
N7A C5A D51 sing 160 n y 
C5A C6A D51 sing 161 n y 
O5B C5B D51 sing 162 n n 
C5B H5B D51 sing 163 n n 
C5B H5BA D51 sing 164 n n 
C5X C9A D51 doub 165 n y 
N6A C6A D51 sing 166 n n 
N6A HN6A D51 sing 167 n n 
N6A HN6B D51 sing 168 n n 
C8A N7A D51 doub 169 n y 
C7M H7M D51 sing 170 n n 
C7M H7MA D51 sing 171 n n 
C7M H7MB D51 sing 172 n n 
C8A N9A D51 sing 173 n y 
C8A H8A D51 sing 174 n n 
C8M H8M D51 sing 175 n n 
C8M H8MA D51 sing 176 n n 
C8M H8MB D51 sing 177 n n 
NAA CAO D51 sing 178 n n 
NAA HNAA D51 sing 179 n n 
NAA HNAB D51 sing 180 n n 
CAE CAB D51 doub 181 n y 
CAB CAD D51 sing 182 n y 
CAB HAB D51 sing 183 n n 
CAH CAD D51 doub 184 n y 
CAD HAD D51 sing 185 n n 
CAI CAE D51 sing 186 n y 
CAE HAE D51 sing 187 n n 
CAP CAH D51 sing 188 n y 
CAH HAH D51 sing 189 n n 
CAI CAP D51 doub 190 n y 
CAI HAI D51 sing 191 n n 
CAO CAL D51 sing 192 n n 
CAL CAM D51 sing 193 n n 
CAL HAL D51 sing 194 n n 
CAL HALA D51 sing 195 n n 
CAM CAP D51 sing 196 n n 
CAM HAM D51 sing 197 n n 
CAN CAO D51 sing 198 n n 
CAN HAN D51 sing 199 n n 
CAN HANA D51 sing 200 n n 
CAN HANB D51 sing 201 n n 
#
_atom_sites.entry_id                     4UVB 
_atom_sites.fract_transf_matrix[1][1]    0.008392 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005554 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004263 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           D51 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      900 
_pdbx_nonpoly_scheme.auth_seq_num     900 
_pdbx_nonpoly_scheme.pdb_mon_id       D51 
_pdbx_nonpoly_scheme.auth_mon_id      D51 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P D51 . . . C 3 -6.419 66.129 90.429 1 54.52 ? P D51 900 A 1 
HETATM 2 N N1 D51 . . . C 3 -8.379 58.428 85.53 1 72.45 ? N1 D51 900 A 1 
HETATM 3 C C2 D51 . . . C 3 -9.408 57.565 85.718 1 71.88 ? C2 D51 900 A 1 
HETATM 4 O O2 D51 . . . C 3 -9.765 57.256 86.877 1 69.91 ? O2 D51 900 A 1 
HETATM 5 N N3 D51 . . . C 3 -10.022 57.002 84.671 1 72.17 ? N3 D51 900 A 1 
HETATM 6 C C4 D51 . . . C 3 -9.672 57.289 83.41 1 72.69 ? C4 D51 900 A 1 
HETATM 7 O O4 D51 . . . C 3 -10.319 56.723 82.507 1 74.95 ? O4 D51 900 A 1 
HETATM 8 N N5 D51 . . . C 3 -8.205 58.539 81.777 1 75.98 ? N5 D51 900 A 1 
HETATM 9 C C6 D51 . . . C 3 -7.505 60.359 80.403 1 68.28 ? C6 D51 900 A 1 
HETATM 10 C C7 D51 . . . C 3 -6.873 61.581 80.23 1 68.88 ? C7 D51 900 A 1 
HETATM 11 C C8 D51 . . . C 3 -6.24 62.248 81.405 1 68.96 ? C8 D51 900 A 1 
HETATM 12 C C9 D51 . . . C 3 -6.289 61.632 82.654 1 69 ? C9 D51 900 A 1 
HETATM 13 P PA D51 . . . C 3 -6.665 68.119 88.391 1 52.8 ? PA D51 900 A 1 
HETATM 14 C C1' D51 . . . C 3 -6.362 60.415 85.281 1 65.58 ? C1' D51 900 A 1 
HETATM 15 C C10 D51 . . . C 3 -7.994 58.792 84.272 1 71.72 ? C10 D51 900 A 1 
HETATM 16 N N10 D51 . . . C 3 -6.968 59.751 84.103 1 69.09 ? N10 D51 900 A 1 
HETATM 17 N N1A D51 . . . C 3 -4.104 78.444 89.991 1 50.79 ? N1A D51 900 A 1 
HETATM 18 O O1A D51 . . . C 3 -8.004 67.484 88.079 1 53.85 ? O1A D51 900 A 1 
HETATM 19 C C1B D51 . . . C 3 -6.052 73.86 88.493 1 51.27 ? C1B D51 900 A 1 
HETATM 20 O O1P D51 . . . C 3 -5.224 65.561 91.155 1 54.01 ? O1P D51 900 A 1 
HETATM 21 C C2' D51 . . . C 3 -7.282 61.386 86.046 1 61.93 ? C2' D51 900 A 1 
HETATM 22 O O2' D51 . . . C 3 -8.018 62.207 85.134 1 61.21 ? O2' D51 900 A 1 
HETATM 23 C C2A D51 . . . C 3 -5.297 77.872 90.263 1 50.33 ? C2A D51 900 A 1 
HETATM 24 O O2A D51 . . . C 3 -5.757 68.58 87.273 1 52.4 ? O2A D51 900 A 1 
HETATM 25 C C2B D51 . . . C 3 -6.36 73.072 87.236 1 50.84 ? C2B D51 900 A 1 
HETATM 26 O O2B D51 . . . C 3 -7.124 73.838 86.303 1 50.7 ? O2B D51 900 A 1 
HETATM 27 O O2P D51 . . . C 3 -7.522 66.804 91.203 1 55.74 ? O2P D51 900 A 1 
HETATM 28 C C3' D51 . . . C 3 -6.481 62.282 86.995 1 61.12 ? C3' D51 900 A 1 
HETATM 29 O O3' D51 . . . C 3 -5.639 61.453 87.798 1 61.17 ? O3' D51 900 A 1 
HETATM 30 N N3A D51 . . . C 3 -5.651 76.665 89.786 1 51.26 ? N3A D51 900 A 1 
HETATM 31 C C3B D51 . . . C 3 -7.144 71.894 87.788 1 50.72 ? C3B D51 900 A 1 
HETATM 32 O O3B D51 . . . C 3 -8.541 72.188 87.797 1 50.43 ? O3B D51 900 A 1 
HETATM 33 O O3P D51 . . . C 3 -5.802 67.142 89.335 1 54.81 ? O3P D51 900 A 1 
HETATM 34 C C4' D51 . . . C 3 -7.311 63.157 87.945 1 60.57 ? C4' D51 900 A 1 
HETATM 35 O O4' D51 . . . C 3 -8.521 63.633 87.333 1 61.58 ? O4' D51 900 A 1 
HETATM 36 C C4A D51 . . . C 3 -4.808 75.946 88.994 1 51.18 ? C4A D51 900 A 1 
HETATM 37 C C4B D51 . . . C 3 -6.697 71.754 89.232 1 51.26 ? C4B D51 900 A 1 
HETATM 38 O O4B D51 . . . C 3 -5.829 72.859 89.488 1 51.96 ? O4B D51 900 A 1 
HETATM 39 C C4X D51 . . . C 3 -8.317 57.871 83.13 1 75.96 ? C4X D51 900 A 1 
HETATM 40 C C5' D51 . . . C 3 -6.482 64.345 88.435 1 59.22 ? C5' D51 900 A 1 
HETATM 41 O O5' D51 . . . C 3 -7.116 64.957 89.563 1 58.24 ? O5' D51 900 A 1 
HETATM 42 C C5A D51 . . . C 3 -3.492 76.507 88.648 1 51.22 ? C5A D51 900 A 1 
HETATM 43 C C5B D51 . . . C 3 -5.979 70.437 89.489 1 53.29 ? C5B D51 900 A 1 
HETATM 44 O O5B D51 . . . C 3 -6.922 69.366 89.382 1 55.69 ? O5B D51 900 A 1 
HETATM 45 C C5X D51 . . . C 3 -7.559 59.734 81.649 1 69.34 ? C5X D51 900 A 1 
HETATM 46 C C6A D51 . . . C 3 -3.172 77.843 89.215 1 50.19 ? C6A D51 900 A 1 
HETATM 47 N N6A D51 . . . C 3 -1.988 78.448 88.964 1 49.88 ? N6A D51 900 A 1 
HETATM 48 N N7A D51 . . . C 3 -2.876 75.597 87.863 1 51.4 ? N7A D51 900 A 1 
HETATM 49 C C7M D51 . . . C 3 -6.847 62.201 78.855 1 68.94 ? C7M D51 900 A 1 
HETATM 50 C C8A D51 . . . C 3 -3.725 74.545 87.718 1 51.4 ? C8A D51 900 A 1 
HETATM 51 C C8M D51 . . . C 3 -5.545 63.578 81.261 1 67.13 ? C8M D51 900 A 1 
HETATM 52 C C9A D51 . . . C 3 -6.921 60.396 82.831 1 69.36 ? C9A D51 900 A 1 
HETATM 53 N N9A D51 . . . C 3 -4.875 74.758 88.39 1 51.59 ? N9A D51 900 A 1 
HETATM 54 N NAA D51 . . . C 3 -6.725 57.623 79.973 1 102.22 ? NAA D51 900 A 1 
HETATM 55 C CAB D51 . . . C 3 -3.928 54.654 84.38 1 107.4 ? CAB D51 900 A 1 
HETATM 56 C CAD D51 . . . C 3 -5.055 54.775 85.196 1 106.41 ? CAD D51 900 A 1 
HETATM 57 C CAE D51 . . . C 3 -3.936 55.22 83.104 1 104.98 ? CAE D51 900 A 1 
HETATM 58 C CAH D51 . . . C 3 -6.181 55.463 84.736 1 102.69 ? CAH D51 900 A 1 
HETATM 59 C CAI D51 . . . C 3 -5.058 55.909 82.642 1 100.95 ? CAI D51 900 A 1 
HETATM 60 C CAL D51 . . . C 3 -7.694 56.265 81.61 1 94.49 ? CAL D51 900 A 1 
HETATM 61 C CAM D51 . . . C 3 -7.314 56.714 83.019 1 93.21 ? CAM D51 900 A 1 
HETATM 62 C CAN D51 . . . C 3 -9.072 57.277 79.809 1 95.39 ? CAN D51 900 A 1 
HETATM 63 C CAO D51 . . . C 3 -7.897 57.525 80.774 1 93.87 ? CAO D51 900 A 1 
HETATM 64 C CAP D51 . . . C 3 -6.185 56.029 83.459 1 100.13 ? CAP D51 900 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           64 
#