data_4UVC
#
_model_server_result.job_id            HdZik3KsYFMS1YttCTZCJA 
_model_server_result.datetime_utc      '2024-12-21 12:55:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4uvc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":900}' 
#
_entry.id    4UVC 
#
_exptl.entry_id    4UVC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              996.852 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4S)-5-[5-[(1S)-1-azanyl-1,3-diphenyl-propyl]-7,8-dimethyl-2,4-bis(oxidanylidene)-4aH-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4UVC 
_cell.length_a            118.96 
_cell.length_b            179.09 
_cell.length_c            234.8 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4UVC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C42 H50 N10 O15 P2' 
_chem_comp.formula_weight    996.852 
_chem_comp.id                D52 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4S)-5-[5-[(1S)-1-azanyl-1,3-diphenyl-propyl]-7,8-dimethyl-2,4-bis(oxidanylidene)-4aH-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3P P D52 sing 83 n n 
O5' P D52 sing 84 n n 
P O1P D52 doub 85 n n 
P O2P D52 sing 86 n n 
C10 N1 D52 doub 87 n n 
N1 C2 D52 sing 88 n n 
N3 C2 D52 sing 89 n n 
C2 O2 D52 doub 90 n n 
C4 N3 D52 sing 91 n n 
N3 HN3 D52 sing 92 n n 
O4 C4 D52 doub 93 n n 
C4X C4 D52 sing 94 n n 
CAP N5 D52 sing 95 n n 
C5X N5 D52 sing 96 n n 
N5 C4X D52 sing 97 n n 
C7 C6 D52 doub 98 n y 
C6 C5X D52 sing 99 n y 
C6 H6 D52 sing 100 n n 
C7M C7 D52 sing 101 n n 
C7 C8 D52 sing 102 n y 
C8M C8 D52 sing 103 n n 
C8 C9 D52 doub 104 n y 
C9 C9A D52 sing 105 n y 
C9 H9 D52 sing 106 n n 
O1A PA D52 doub 107 n n 
O2A PA D52 sing 108 n n 
PA O5B D52 sing 109 n n 
PA O3P D52 sing 110 n n 
N10 C1' D52 sing 111 n n 
C1' C2' D52 sing 112 n n 
C1' H1' D52 sing 113 n n 
C1' "H1'A" D52 sing 114 n n 
C4X C10 D52 sing 115 n n 
N10 C10 D52 sing 116 n n 
C9A N10 D52 sing 117 n n 
C6A N1A D52 doub 118 n y 
N1A C2A D52 sing 119 n y 
C2B C1B D52 sing 120 n n 
N9A C1B D52 sing 121 n n 
C1B O4B D52 sing 122 n n 
C1B H1B D52 sing 123 n n 
O2' C2' D52 sing 124 n n 
C2' C3' D52 sing 125 n n 
C2' H2' D52 sing 126 n n 
O2' HO2' D52 sing 127 n n 
N3A C2A D52 doub 128 n y 
C2A H2A D52 sing 129 n n 
O2A HO2A D52 sing 130 n n 
O2B C2B D52 sing 131 n n 
C2B C3B D52 sing 132 n n 
C2B H2B D52 sing 133 n n 
O2B HO2B D52 sing 134 n n 
O2P HO2P D52 sing 135 n n 
C3' C4' D52 sing 136 n n 
C3' O3' D52 sing 137 n n 
C3' H3' D52 sing 138 n n 
O3' HO3' D52 sing 139 n n 
C4A N3A D52 sing 140 n y 
C3B O3B D52 sing 141 n n 
C3B C4B D52 sing 142 n n 
C3B H3B D52 sing 143 n n 
O3B HO3B D52 sing 144 n n 
O4' C4' D52 sing 145 n n 
C4' C5' D52 sing 146 n n 
C4' H4' D52 sing 147 n n 
O4' HO4' D52 sing 148 n n 
N9A C4A D52 sing 149 n y 
C5A C4A D52 doub 150 n y 
C4B O4B D52 sing 151 n n 
C4B C5B D52 sing 152 n n 
C4B H4B D52 sing 153 n n 
C4X H4X D52 sing 154 n n 
C5' O5' D52 sing 155 n n 
C5' H5' D52 sing 156 n n 
C5' "H5'A" D52 sing 157 n n 
N7A C5A D52 sing 158 n y 
C5A C6A D52 sing 159 n y 
O5B C5B D52 sing 160 n n 
C5B H5B D52 sing 161 n n 
C5B H5BA D52 sing 162 n n 
C5X C9A D52 doub 163 n y 
N6A C6A D52 sing 164 n n 
N6A HN6A D52 sing 165 n n 
N6A HN6B D52 sing 166 n n 
C8A N7A D52 doub 167 n y 
C7M H7M D52 sing 168 n n 
C7M H7MA D52 sing 169 n n 
C7M H7MB D52 sing 170 n n 
C8A N9A D52 sing 171 n y 
C8A H8A D52 sing 172 n n 
C8M H8M D52 sing 173 n n 
C8M H8MA D52 sing 174 n n 
C8M H8MB D52 sing 175 n n 
NAA CAP D52 sing 176 n n 
NAA HNAA D52 sing 177 n n 
NAA HNAB D52 sing 178 n n 
CAD CAB D52 doub 179 n y 
CAB CAE D52 sing 180 n y 
CAB HAB D52 sing 181 n n 
CAC CAF D52 doub 182 n y 
CAC CAG D52 sing 183 n y 
CAC HAC D52 sing 184 n n 
CAH CAD D52 sing 185 n y 
CAD HAD D52 sing 186 n n 
CAI CAE D52 doub 187 n y 
CAE HAE D52 sing 188 n n 
CAF CAJ D52 sing 189 n y 
CAF HAF D52 sing 190 n n 
CAG CAK D52 doub 191 n y 
CAG HAG D52 sing 192 n n 
CAH CAN D52 doub 193 n y 
CAH HAH D52 sing 194 n n 
CAN CAI D52 sing 195 n y 
CAI HAI D52 sing 196 n n 
CAJ CAO D52 doub 197 n y 
CAJ HAJ D52 sing 198 n n 
CAK CAO D52 sing 199 n y 
CAK HAK D52 sing 200 n n 
CAL CAN D52 sing 201 n n 
CAL CAM D52 sing 202 n n 
CAL HAL D52 sing 203 n n 
CAL HALA D52 sing 204 n n 
CAP CAM D52 sing 205 n n 
CAM HAM D52 sing 206 n n 
CAM HAMA D52 sing 207 n n 
CAO CAP D52 sing 208 n n 
#
_atom_sites.entry_id                     4UVC 
_atom_sites.fract_transf_matrix[1][1]    0.008406 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005584 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004259 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           D52 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      900 
_pdbx_nonpoly_scheme.auth_seq_num     900 
_pdbx_nonpoly_scheme.pdb_mon_id       D52 
_pdbx_nonpoly_scheme.auth_mon_id      D52 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P D52 . . . C 3 -6.49 65.707 90.59 1 57.47 ? P D52 900 A 1 
HETATM 2 N N1 D52 . . . C 3 -8.64 58.14 85.814 1 77.95 ? N1 D52 900 A 1 
HETATM 3 C C2 D52 . . . C 3 -9.634 57.214 85.967 1 80.88 ? C2 D52 900 A 1 
HETATM 4 O O2 D52 . . . C 3 -10.021 56.876 87.113 1 79.95 ? O2 D52 900 A 1 
HETATM 5 N N3 D52 . . . C 3 -10.242 56.645 84.907 1 80.27 ? N3 D52 900 A 1 
HETATM 6 C C4 D52 . . . C 3 -10.037 57.06 83.649 1 75.83 ? C4 D52 900 A 1 
HETATM 7 O O4 D52 . . . C 3 -10.511 56.385 82.707 1 73.01 ? O4 D52 900 A 1 
HETATM 8 N N5 D52 . . . C 3 -8.382 58.261 82.013 1 79.85 ? N5 D52 900 A 1 
HETATM 9 C C6 D52 . . . C 3 -7.676 60.095 80.652 1 72.82 ? C6 D52 900 A 1 
HETATM 10 C C7 D52 . . . C 3 -7.005 61.292 80.485 1 74.33 ? C7 D52 900 A 1 
HETATM 11 C C8 D52 . . . C 3 -6.35 61.929 81.655 1 78.14 ? C8 D52 900 A 1 
HETATM 12 C C9 D52 . . . C 3 -6.41 61.306 82.909 1 78.65 ? C9 D52 900 A 1 
HETATM 13 P PA D52 . . . C 3 -6.628 67.635 88.481 1 54.46 ? PA D52 900 A 1 
HETATM 14 C C1' D52 . . . C 3 -6.419 60.012 85.528 1 69.79 ? C1' D52 900 A 1 
HETATM 15 C C10 D52 . . . C 3 -8.185 58.5 84.578 1 75.78 ? C10 D52 900 A 1 
HETATM 16 N N10 D52 . . . C 3 -7.148 59.448 84.367 1 73.83 ? N10 D52 900 A 1 
HETATM 17 N N1A D52 . . . C 3 -4.012 77.893 89.955 1 53.57 ? N1A D52 900 A 1 
HETATM 18 O O1A D52 . . . C 3 -5.633 68.102 87.43 1 52.57 ? O1A D52 900 A 1 
HETATM 19 C C1B D52 . . . C 3 -6.069 73.335 88.596 1 50.08 ? C1B D52 900 A 1 
HETATM 20 O O1P D52 . . . C 3 -5.323 65.017 91.277 1 53.86 ? O1P D52 900 A 1 
HETATM 21 C C2' D52 . . . C 3 -7.323 60.955 86.333 1 67.82 ? C2' D52 900 A 1 
HETATM 22 O O2' D52 . . . C 3 -8.149 61.709 85.437 1 66.49 ? O2' D52 900 A 1 
HETATM 23 C C2A D52 . . . C 3 -5.236 77.368 90.224 1 53.02 ? C2A D52 900 A 1 
HETATM 24 O O2A D52 . . . C 3 -7.932 66.944 88.111 1 56.36 ? O2A D52 900 A 1 
HETATM 25 C C2B D52 . . . C 3 -6.39 72.527 87.37 1 51 ? C2B D52 900 A 1 
HETATM 26 O O2B D52 . . . C 3 -7.007 73.355 86.393 1 51.25 ? O2B D52 900 A 1 
HETATM 27 O O2P D52 . . . C 3 -7.555 66.416 91.408 1 61.9 ? O2P D52 900 A 1 
HETATM 28 C C3' D52 . . . C 3 -6.539 61.93 87.204 1 64.5 ? C3' D52 900 A 1 
HETATM 29 O O3' D52 . . . C 3 -5.693 61.196 88.087 1 58.81 ? O3' D52 900 A 1 
HETATM 30 N N3A D52 . . . C 3 -5.636 76.156 89.788 1 50.8 ? N3A D52 900 A 1 
HETATM 31 C C3B D52 . . . C 3 -7.296 71.451 87.958 1 53.45 ? C3B D52 900 A 1 
HETATM 32 O O3B D52 . . . C 3 -8.681 71.832 87.99 1 55.61 ? O3B D52 900 A 1 
HETATM 33 O O3P D52 . . . C 3 -5.812 66.745 89.552 1 53.8 ? O3P D52 900 A 1 
HETATM 34 C C4' D52 . . . C 3 -7.452 62.816 88.046 1 66.36 ? C4' D52 900 A 1 
HETATM 35 O O4' D52 . . . C 3 -8.558 63.334 87.28 1 62.71 ? O4' D52 900 A 1 
HETATM 36 C C4A D52 . . . C 3 -4.789 75.388 89.041 1 54.6 ? C4A D52 900 A 1 
HETATM 37 C C4B D52 . . . C 3 -6.837 71.318 89.399 1 51.68 ? C4B D52 900 A 1 
HETATM 38 O O4B D52 . . . C 3 -5.861 72.337 89.587 1 49.68 ? O4B D52 900 A 1 
HETATM 39 C C4X D52 . . . C 3 -8.839 57.894 83.388 1 75.32 ? C4X D52 900 A 1 
HETATM 40 C C5' D52 . . . C 3 -6.619 63.959 88.632 1 68.06 ? C5' D52 900 A 1 
HETATM 41 O O5' D52 . . . C 3 -7.303 64.652 89.687 1 62.04 ? O5' D52 900 A 1 
HETATM 42 C C5A D52 . . . C 3 -3.435 75.886 88.703 1 54.66 ? C5A D52 900 A 1 
HETATM 43 C C5B D52 . . . C 3 -6.211 69.966 89.683 1 54.16 ? C5B D52 900 A 1 
HETATM 44 O O5B D52 . . . C 3 -7.114 68.928 89.313 1 56 ? O5B D52 900 A 1 
HETATM 45 C C5X D52 . . . C 3 -7.742 59.46 81.895 1 74.15 ? C5X D52 900 A 1 
HETATM 46 C C6A D52 . . . C 3 -3.085 77.223 89.219 1 53.79 ? C6A D52 900 A 1 
HETATM 47 N N6A D52 . . . C 3 -1.868 77.734 88.938 1 56.05 ? N6A D52 900 A 1 
HETATM 48 N N7A D52 . . . C 3 -2.812 74.939 87.967 1 53.34 ? N7A D52 900 A 1 
HETATM 49 C C7M D52 . . . C 3 -6.953 61.934 79.125 1 74.48 ? C7M D52 900 A 1 
HETATM 50 C C8A D52 . . . C 3 -3.695 73.908 87.845 1 55.1 ? C8A D52 900 A 1 
HETATM 51 C C8M D52 . . . C 3 -5.63 63.243 81.481 1 76.13 ? C8M D52 900 A 1 
HETATM 52 C C9A D52 . . . C 3 -7.08 60.089 83.089 1 75.69 ? C9A D52 900 A 1 
HETATM 53 N N9A D52 . . . C 3 -4.868 74.182 88.475 1 53.78 ? N9A D52 900 A 1 
HETATM 54 N NAA D52 . . . C 3 -6.358 57.793 81.288 1 108.8 ? NAA D52 900 A 1 
HETATM 55 C CAB D52 . . . C 3 -6.648 50.929 81.508 1 116.38 ? CAB D52 900 A 1 
HETATM 56 C CAC D52 . . . C 3 -9.263 56.241 77.603 1 106.78 ? CAC D52 900 A 1 
HETATM 57 C CAD D52 . . . C 3 -7.732 51.738 81.136 1 111.46 ? CAD D52 900 A 1 
HETATM 58 C CAE D52 . . . C 3 -5.41 51.504 81.823 1 118.75 ? CAE D52 900 A 1 
HETATM 59 C CAF D52 . . . C 3 -8.081 56.965 77.72 1 105.21 ? CAF D52 900 A 1 
HETATM 60 C CAG D52 . . . C 3 -9.903 55.805 78.759 1 110.72 ? CAG D52 900 A 1 
HETATM 61 C CAH D52 . . . C 3 -7.576 53.127 81.079 1 110.55 ? CAH D52 900 A 1 
HETATM 62 C CAI D52 . . . C 3 -5.254 52.896 81.766 1 119.12 ? CAI D52 900 A 1 
HETATM 63 C CAJ D52 . . . C 3 -7.555 57.245 78.982 1 107.66 ? CAJ D52 900 A 1 
HETATM 64 C CAK D52 . . . C 3 -9.377 56.09 80.021 1 111.21 ? CAK D52 900 A 1 
HETATM 65 C CAL D52 . . . C 3 -6.149 55.077 81.356 1 102.08 ? CAL D52 900 A 1 
HETATM 66 C CAM D52 . . . C 3 -7.3 55.774 82.109 1 101.15 ? CAM D52 900 A 1 
HETATM 67 C CAN D52 . . . C 3 -6.334 53.704 81.396 1 112.71 ? CAN D52 900 A 1 
HETATM 68 C CAO D52 . . . C 3 -8.194 56.821 80.157 1 107.99 ? CAO D52 900 A 1 
HETATM 69 C CAP D52 . . . C 3 -7.647 57.113 81.434 1 101.53 ? CAP D52 900 A 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           69 
#