data_4UW0 # _model_server_result.job_id N_k1Bc1G7Isf2KKw_nTO7A _model_server_result.datetime_utc '2024-11-20 06:15:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4uw0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1506}' # _entry.id 4UW0 # _exptl.entry_id 4UW0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4UW0 _cell.length_a 181.29 _cell.length_b 181.29 _cell.length_c 181.29 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UW0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 3 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 275 n n N HN1 SAM sing 276 n n N HN2 SAM sing 277 n n CA C SAM sing 278 n n CA CB SAM sing 279 n n CA HA SAM sing 280 n n C O SAM doub 281 n n C OXT SAM sing 282 n n CB CG SAM sing 283 n n CB HB1 SAM sing 284 n n CB HB2 SAM sing 285 n n CG SD SAM sing 286 n n CG HG1 SAM sing 287 n n CG HG2 SAM sing 288 n n SD CE SAM sing 289 n n SD C5' SAM sing 290 n n CE HE1 SAM sing 291 n n CE HE2 SAM sing 292 n n CE HE3 SAM sing 293 n n C5' C4' SAM sing 294 n n C5' "H5'1" SAM sing 295 n n C5' "H5'2" SAM sing 296 n n C4' O4' SAM sing 297 n n C4' C3' SAM sing 298 n n C4' H4' SAM sing 299 n n O4' C1' SAM sing 300 n n C3' O3' SAM sing 301 n n C3' C2' SAM sing 302 n n C3' H3' SAM sing 303 n n O3' HO3' SAM sing 304 n n C2' O2' SAM sing 305 n n C2' C1' SAM sing 306 n n C2' H2' SAM sing 307 n n O2' HO2' SAM sing 308 n n C1' N9 SAM sing 309 n n C1' H1' SAM sing 310 n n N9 C8 SAM sing 311 n y N9 C4 SAM sing 312 n y C8 N7 SAM doub 313 n y C8 H8 SAM sing 314 n n N7 C5 SAM sing 315 n y C5 C6 SAM sing 316 n y C5 C4 SAM doub 317 n y C6 N6 SAM sing 318 n n C6 N1 SAM doub 319 n y N6 HN61 SAM sing 320 n n N6 HN62 SAM sing 321 n n N1 C2 SAM sing 322 n y C2 N3 SAM doub 323 n y C2 H2 SAM sing 324 n n N3 C4 SAM sing 325 n y # _atom_sites.entry_id 4UW0 _atom_sites.fract_transf_matrix[1][1] 0.005516 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id SAM _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1506 _pdbx_nonpoly_scheme.auth_seq_num 1506 _pdbx_nonpoly_scheme.pdb_mon_id SAM _pdbx_nonpoly_scheme.auth_mon_id SAM _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . B 2 -47.076 18.059 26.474 1 121.31 ? N SAM 1506 A 1 HETATM 2 C CA SAM . . . B 2 -47.249 18.359 27.889 1 122.05 ? CA SAM 1506 A 1 HETATM 3 C C SAM . . . B 2 -47.564 19.813 28.117 1 125.98 ? C SAM 1506 A 1 HETATM 4 O O SAM . . . B 2 -47.073 20.699 27.379 1 125.28 ? O SAM 1506 A 1 HETATM 5 O OXT SAM . . . B 2 -48.32 20.088 29.073 1 128.72 ? OXT SAM 1506 A 1 HETATM 6 C CB SAM . . . B 2 -46.014 17.945 28.7 1 117.99 ? CB SAM 1506 A 1 HETATM 7 C CG SAM . . . B 2 -44.803 18.848 28.464 1 117.2 ? CG SAM 1506 A 1 HETATM 8 S SD SAM . . . B 2 -43.428 18.206 29.155 1 121.5 ? SD SAM 1506 A 1 HETATM 9 C CE SAM . . . B 2 -42.226 19.359 29.197 1 122.55 ? CE SAM 1506 A 1 HETATM 10 C C5' SAM . . . B 2 -42.861 16.897 28.285 1 124.58 ? C5' SAM 1506 A 1 HETATM 11 C C4' SAM . . . B 2 -43.06 15.582 29.044 1 127.37 ? C4' SAM 1506 A 1 HETATM 12 O O4' SAM . . . B 2 -42.918 14.451 28.164 1 128.27 ? O4' SAM 1506 A 1 HETATM 13 C C3' SAM . . . B 2 -42.043 15.406 30.167 1 131.46 ? C3' SAM 1506 A 1 HETATM 14 O O3' SAM . . . B 2 -42.732 15.213 31.416 1 130.51 ? O3' SAM 1506 A 1 HETATM 15 C C2' SAM . . . B 2 -41.201 14.195 29.797 1 132.35 ? C2' SAM 1506 A 1 HETATM 16 O O2' SAM . . . B 2 -41.053 13.352 30.949 1 130.48 ? O2' SAM 1506 A 1 HETATM 17 C C1' SAM . . . B 2 -41.961 13.495 28.663 1 131.66 ? C1' SAM 1506 A 1 HETATM 18 N N9 SAM . . . B 2 -41.086 12.952 27.574 1 130.78 ? N9 SAM 1506 A 1 HETATM 19 C C8 SAM . . . B 2 -39.954 13.494 27.066 1 132.1 ? C8 SAM 1506 A 1 HETATM 20 N N7 SAM . . . B 2 -39.431 12.711 26.085 1 132.33 ? N7 SAM 1506 A 1 HETATM 21 C C5 SAM . . . B 2 -40.234 11.645 25.946 1 130.04 ? C5 SAM 1506 A 1 HETATM 22 C C6 SAM . . . B 2 -40.251 10.437 25.092 1 127.65 ? C6 SAM 1506 A 1 HETATM 23 N N6 SAM . . . B 2 -39.281 10.227 24.17 1 126 ? N6 SAM 1506 A 1 HETATM 24 N N1 SAM . . . B 2 -41.274 9.571 25.274 1 125.85 ? N1 SAM 1506 A 1 HETATM 25 C C2 SAM . . . B 2 -42.244 9.775 26.195 1 125.33 ? C2 SAM 1506 A 1 HETATM 26 N N3 SAM . . . B 2 -42.281 10.849 27.004 1 124.67 ? N3 SAM 1506 A 1 HETATM 27 C C4 SAM . . . B 2 -41.32 11.803 26.93 1 128.74 ? C4 SAM 1506 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #