data_4UX6
#
_model_server_result.job_id            9pn07XOFDUDbD_sn6W95BQ 
_model_server_result.datetime_utc      '2024-12-03 14:20:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ux6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1497}' 
#
_entry.id    4UX6 
#
_exptl.entry_id    4UX6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4UX6 
_cell.length_a            213.55 
_cell.length_b            213.55 
_cell.length_c            115.99 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4UX6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 38.663333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 2 B CYS 109 1_555 B SG CYS 2 B CYS 109 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc1 B SG CYS 87 B CYS 194 1_555 C FE HEM . B HEM 1497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 162 n n 
CHA C4D HEM doub 163 n n 
CHA HHA HEM sing 164 n n 
CHB C4A HEM sing 165 n n 
CHB C1B HEM doub 166 n n 
CHB HHB HEM sing 167 n n 
CHC C4B HEM sing 168 n n 
CHC C1C HEM doub 169 n n 
CHC HHC HEM sing 170 n n 
CHD C4C HEM doub 171 n n 
CHD C1D HEM sing 172 n n 
CHD HHD HEM sing 173 n n 
C1A C2A HEM doub 174 n y 
C1A NA HEM sing 175 n y 
C2A C3A HEM sing 176 n y 
C2A CAA HEM sing 177 n n 
C3A C4A HEM doub 178 n y 
C3A CMA HEM sing 179 n n 
C4A NA HEM sing 180 n y 
CMA HMA HEM sing 181 n n 
CMA HMAA HEM sing 182 n n 
CMA HMAB HEM sing 183 n n 
CAA CBA HEM sing 184 n n 
CAA HAA HEM sing 185 n n 
CAA HAAA HEM sing 186 n n 
CBA CGA HEM sing 187 n n 
CBA HBA HEM sing 188 n n 
CBA HBAA HEM sing 189 n n 
CGA O1A HEM doub 190 n n 
CGA O2A HEM sing 191 n n 
C1B C2B HEM sing 192 n n 
C1B NB HEM sing 193 n n 
C2B C3B HEM doub 194 n n 
C2B CMB HEM sing 195 n n 
C3B C4B HEM sing 196 n n 
C3B CAB HEM sing 197 n n 
C4B NB HEM doub 198 n n 
CMB HMB HEM sing 199 n n 
CMB HMBA HEM sing 200 n n 
CMB HMBB HEM sing 201 n n 
CAB CBB HEM doub 202 n n 
CAB HAB HEM sing 203 n n 
CBB HBB HEM sing 204 n n 
CBB HBBA HEM sing 205 n n 
C1C C2C HEM sing 206 n y 
C1C NC HEM sing 207 n y 
C2C C3C HEM doub 208 n y 
C2C CMC HEM sing 209 n n 
C3C C4C HEM sing 210 n y 
C3C CAC HEM sing 211 n n 
C4C NC HEM sing 212 n y 
CMC HMC HEM sing 213 n n 
CMC HMCA HEM sing 214 n n 
CMC HMCB HEM sing 215 n n 
CAC CBC HEM doub 216 n n 
CAC HAC HEM sing 217 n n 
CBC HBC HEM sing 218 n n 
CBC HBCA HEM sing 219 n n 
C1D C2D HEM sing 220 n n 
C1D ND HEM doub 221 n n 
C2D C3D HEM doub 222 n n 
C2D CMD HEM sing 223 n n 
C3D C4D HEM sing 224 n n 
C3D CAD HEM sing 225 n n 
C4D ND HEM sing 226 n n 
CMD HMD HEM sing 227 n n 
CMD HMDA HEM sing 228 n n 
CMD HMDB HEM sing 229 n n 
CAD CBD HEM sing 230 n n 
CAD HAD HEM sing 231 n n 
CAD HADA HEM sing 232 n n 
CBD CGD HEM sing 233 n n 
CBD HBD HEM sing 234 n n 
CBD HBDA HEM sing 235 n n 
CGD O1D HEM doub 236 n n 
CGD O2D HEM sing 237 n n 
O2A H2A HEM sing 238 n n 
O2D H2D HEM sing 239 n n 
FE NA HEM sing 240 n n 
FE NB HEM sing 241 n n 
FE NC HEM sing 242 n n 
FE ND HEM sing 243 n n 
#
_atom_sites.entry_id                     4UX6 
_atom_sites.fract_transf_matrix[1][1]    0.004683 
_atom_sites.fract_transf_matrix[1][2]    0.002704 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005407 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008621 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HEM B 1 1497 1497 HEM HEM . 
D 4 H4B B 1 1498 1498 H4B H4B . 
E 5 YWO B 1 1499 1499 YWO YWO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 24.406 71.681 21.099 1 21.19 ? CHA HEM 1497 B 1 
HETATM 2 C CHB HEM . . . C 3 21.333 68.985 18.489 1 18.3 ? CHB HEM 1497 B 1 
HETATM 3 C CHC HEM . . . C 3 18.571 72.908 17.873 1 24.32 ? CHC HEM 1497 B 1 
HETATM 4 C CHD HEM . . . C 3 22.028 75.67 19.818 1 25.56 ? CHD HEM 1497 B 1 
HETATM 5 C C1A HEM . . . C 3 23.838 70.597 20.485 1 21.93 ? C1A HEM 1497 B 1 
HETATM 6 C C2A HEM . . . C 3 24.265 69.186 20.618 1 21.46 ? C2A HEM 1497 B 1 
HETATM 7 C C3A HEM . . . C 3 23.414 68.502 19.881 1 21.59 ? C3A HEM 1497 B 1 
HETATM 8 C C4A HEM . . . C 3 22.406 69.351 19.297 1 20.02 ? C4A HEM 1497 B 1 
HETATM 9 C CMA HEM . . . C 3 23.424 66.983 19.687 1 18.5 ? CMA HEM 1497 B 1 
HETATM 10 C CAA HEM . . . C 3 25.54 68.748 21.343 1 19.45 ? CAA HEM 1497 B 1 
HETATM 11 C CBA HEM . . . C 3 25.004 68.764 22.721 1 15.74 ? CBA HEM 1497 B 1 
HETATM 12 C CGA HEM . . . C 3 25.714 68.237 24.002 1 16.5 ? CGA HEM 1497 B 1 
HETATM 13 O O1A HEM . . . C 3 26.853 67.679 23.866 1 21.24 ? O1A HEM 1497 B 1 
HETATM 14 O O2A HEM . . . C 3 25.13 68.383 25.091 1 17.37 ? O2A HEM 1497 B 1 
HETATM 15 C C1B HEM . . . C 3 20.313 69.822 18.07 1 21.37 ? C1B HEM 1497 B 1 
HETATM 16 C C2B HEM . . . C 3 19.129 69.372 17.357 1 21.54 ? C2B HEM 1497 B 1 
HETATM 17 C C3B HEM . . . C 3 18.31 70.457 17.247 1 21.6 ? C3B HEM 1497 B 1 
HETATM 18 C C4B HEM . . . C 3 18.979 71.588 17.874 1 23.54 ? C4B HEM 1497 B 1 
HETATM 19 C CMB HEM . . . C 3 18.906 67.949 16.807 1 21.29 ? CMB HEM 1497 B 1 
HETATM 20 C CAB HEM . . . C 3 16.893 70.53 16.594 1 21.93 ? CAB HEM 1497 B 1 
HETATM 21 C CBB HEM . . . C 3 16.867 70.688 15.067 1 21.69 ? CBB HEM 1497 B 1 
HETATM 22 C C1C HEM . . . C 3 19.309 73.985 18.286 1 27.85 ? C1C HEM 1497 B 1 
HETATM 23 C C2C HEM . . . C 3 18.859 75.343 18.102 1 29.14 ? C2C HEM 1497 B 1 
HETATM 24 C C3C HEM . . . C 3 19.841 76.159 18.591 1 26.8 ? C3C HEM 1497 B 1 
HETATM 25 C C4C HEM . . . C 3 20.889 75.291 19.138 1 26.54 ? C4C HEM 1497 B 1 
HETATM 26 C CMC HEM . . . C 3 17.473 75.68 17.444 1 28.04 ? CMC HEM 1497 B 1 
HETATM 27 C CAC HEM . . . C 3 19.979 77.662 18.488 1 28.83 ? CAC HEM 1497 B 1 
HETATM 28 C CBC HEM . . . C 3 18.697 78.419 18.934 1 24.38 ? CBC HEM 1497 B 1 
HETATM 29 C C1D HEM . . . C 3 22.945 74.822 20.42 1 23.64 ? C1D HEM 1497 B 1 
HETATM 30 C C2D HEM . . . C 3 24.048 75.228 21.311 1 23.71 ? C2D HEM 1497 B 1 
HETATM 31 C C3D HEM . . . C 3 24.649 74.102 21.726 1 21.48 ? C3D HEM 1497 B 1 
HETATM 32 C C4D HEM . . . C 3 24.011 72.998 21.024 1 22.56 ? C4D HEM 1497 B 1 
HETATM 33 C CMD HEM . . . C 3 24.314 76.646 21.844 1 23.66 ? CMD HEM 1497 B 1 
HETATM 34 C CAD HEM . . . C 3 25.74 74.003 22.794 1 21.74 ? CAD HEM 1497 B 1 
HETATM 35 C CBD HEM . . . C 3 25.242 73.907 24.248 1 21.86 ? CBD HEM 1497 B 1 
HETATM 36 C CGD HEM . . . C 3 26.419 73.795 25.199 1 21.62 ? CGD HEM 1497 B 1 
HETATM 37 O O1D HEM . . . C 3 27.515 74.356 24.907 1 26.38 ? O1D HEM 1497 B 1 
HETATM 38 O O2D HEM . . . C 3 26.217 73.137 26.236 1 25.13 ? O2D HEM 1497 B 1 
HETATM 39 N NA HEM . . . C 3 22.695 70.649 19.723 1 23.01 ? NA HEM 1497 B 1 
HETATM 40 N NB HEM . . . C 3 20.219 71.211 18.342 1 23.68 ? NB HEM 1497 B 1 
HETATM 41 N NC HEM . . . C 3 20.53 73.951 18.939 1 27.15 ? NC HEM 1497 B 1 
HETATM 42 N ND HEM . . . C 3 22.936 73.433 20.274 1 22.74 ? ND HEM 1497 B 1 
HETATM 43 FE FE HEM . . . C 3 21.627 72.334 19.333 1 22.05 ? FE HEM 1497 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           110 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#