data_4UX6 # _model_server_result.job_id vhlCl0lfGsUQb1zyeQnohA _model_server_result.datetime_utc '2024-12-02 20:35:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ux6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1498}' # _entry.id 4UX6 # _exptl.entry_id 4UX6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4UX6 _cell.length_a 213.55 _cell.length_b 213.55 _cell.length_c 115.99 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UX6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 38.663333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 2 B CYS 109 1_555 B SG CYS 2 B CYS 109 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc1 B SG CYS 87 B CYS 194 1_555 C FE HEM . B HEM 1497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 129 n y N1 C8A H4B sing 130 n y C2 N2 H4B sing 131 n n C2 N3 H4B sing 132 n y N2 HN21 H4B sing 133 n n N2 HN22 H4B sing 134 n n N3 C4 H4B sing 135 n y N3 HN3 H4B sing 136 n n C4 O4 H4B doub 137 n n C4 C4A H4B sing 138 n y C4A C8A H4B doub 139 n y C4A N5 H4B sing 140 n n C8A N8 H4B sing 141 n n N5 C6 H4B sing 142 n n N5 HN5 H4B sing 143 n n N8 C7 H4B sing 144 n n N8 HN8 H4B sing 145 n n C6 C7 H4B sing 146 n n C6 C9 H4B sing 147 n n C6 H6 H4B sing 148 n n C7 H71 H4B sing 149 n n C7 H72 H4B sing 150 n n C9 O9 H4B sing 151 n n C9 C10 H4B sing 152 n n C9 H9 H4B sing 153 n n O9 HO9 H4B sing 154 n n C10 C11 H4B sing 155 n n C10 O10 H4B sing 156 n n C10 H10 H4B sing 157 n n C11 H111 H4B sing 158 n n C11 H112 H4B sing 159 n n C11 H113 H4B sing 160 n n O10 HO0 H4B sing 161 n n # _atom_sites.entry_id 4UX6 _atom_sites.fract_transf_matrix[1][1] 0.004683 _atom_sites.fract_transf_matrix[1][2] 0.002704 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005407 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM B 1 1497 1497 HEM HEM . D 4 H4B B 1 1498 1498 H4B H4B . E 5 YWO B 1 1499 1499 YWO YWO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . D 4 31.006 66.688 22.925 1 18.13 ? N1 H4B 1498 B 1 HETATM 2 C C2 H4B . . . D 4 29.582 66.992 23.159 1 11.28 ? C2 H4B 1498 B 1 HETATM 3 N N2 H4B . . . D 4 28.704 67.021 22.141 1 14.92 ? N2 H4B 1498 B 1 HETATM 4 N N3 H4B . . . D 4 29.198 67.257 24.452 1 14.37 ? N3 H4B 1498 B 1 HETATM 5 C C4 H4B . . . D 4 29.986 67.287 25.634 1 17.7 ? C4 H4B 1498 B 1 HETATM 6 O O4 H4B . . . D 4 29.501 67.543 26.784 1 20.24 ? O4 H4B 1498 B 1 HETATM 7 C C4A H4B . . . D 4 31.328 66.999 25.373 1 18.07 ? C4A H4B 1498 B 1 HETATM 8 C C8A H4B . . . D 4 31.825 66.711 24.061 1 15.72 ? C8A H4B 1498 B 1 HETATM 9 N N5 H4B . . . D 4 32.244 67.019 26.44 1 17.8 ? N5 H4B 1498 B 1 HETATM 10 N N8 H4B . . . D 4 33.136 66.434 23.811 1 18.76 ? N8 H4B 1498 B 1 HETATM 11 C C6 H4B . . . D 4 33.585 66.761 26.216 1 20.8 ? C6 H4B 1498 B 1 HETATM 12 C C7 H4B . . . D 4 33.976 66.471 24.891 1 18.88 ? C7 H4B 1498 B 1 HETATM 13 C C9 H4B . . . D 4 34.443 66.879 27.446 1 23.72 ? C9 H4B 1498 B 1 HETATM 14 O O9 H4B . . . D 4 34.666 65.62 27.876 1 25.01 ? O9 H4B 1498 B 1 HETATM 15 C C10 H4B . . . D 4 35.785 67.724 27.461 1 26.43 ? C10 H4B 1498 B 1 HETATM 16 C C11 H4B . . . D 4 35.5 69.136 26.942 1 30.22 ? C11 H4B 1498 B 1 HETATM 17 O O10 H4B . . . D 4 36.696 67.167 26.596 1 35.2 ? O10 H4B 1498 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 756 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 17 #