data_4UX6 # _model_server_result.job_id adKs0fT0-wqN_Hjaz-zxQw _model_server_result.datetime_utc '2024-12-03 14:18:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ux6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1499}' # _entry.id 4UX6 # _exptl.entry_id 4UX6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 315.324 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description O-(5-methyl-2-nitrophenyl)-D-tyrosinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4UX6 _cell.length_a 213.55 _cell.length_b 213.55 _cell.length_c 115.99 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UX6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 38.663333 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 2 B CYS 109 1_555 B SG CYS 2 B CYS 109 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc1 B SG CYS 87 B CYS 194 1_555 C FE HEM . B HEM 1497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? # _chem_comp.formula 'C16 H17 N3 O4' _chem_comp.formula_weight 315.324 _chem_comp.id YWO _chem_comp.mon_nstd_flag . _chem_comp.name O-(5-methyl-2-nitrophenyl)-D-tyrosinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 YWO doub 489 n y C1 C6 YWO sing 490 n y N1 C2 YWO sing 491 n n N1 O2 YWO doub 492 n n N1 O3 YWO sing 493 n n O1 C3 YWO sing 494 n n O1 C7 YWO sing 495 n n C2 C3 YWO sing 496 n y N2 C15 YWO sing 497 n n C3 C4 YWO doub 498 n y N3 C16 YWO sing 499 n n C4 C5 YWO sing 500 n y O4 C16 YWO doub 501 n n C5 C6 YWO doub 502 n y C5 C13 YWO sing 503 n n C7 C8 YWO doub 504 n y C7 C12 YWO sing 505 n y C8 C9 YWO sing 506 n y C9 C10 YWO doub 507 n y C10 C11 YWO sing 508 n y C10 C14 YWO sing 509 n n C11 C12 YWO doub 510 n y C14 C15 YWO sing 511 n n C15 C16 YWO sing 512 n n C1 H1 YWO sing 513 n n N2 HN2 YWO sing 514 n n N2 HN2A YWO sing 515 n n N3 HN3 YWO sing 516 n n N3 HN3A YWO sing 517 n n C4 H4 YWO sing 518 n n C6 H6 YWO sing 519 n n C8 H8 YWO sing 520 n n C9 H9 YWO sing 521 n n C11 H11 YWO sing 522 n n C12 H12 YWO sing 523 n n C13 H13 YWO sing 524 n n C13 H13A YWO sing 525 n n C13 H13B YWO sing 526 n n C14 H14 YWO sing 527 n n C14 H14A YWO sing 528 n n C15 H15 YWO sing 529 n n # _atom_sites.entry_id 4UX6 _atom_sites.fract_transf_matrix[1][1] 0.004683 _atom_sites.fract_transf_matrix[1][2] 0.002704 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005407 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM B 1 1497 1497 HEM HEM . D 4 H4B B 1 1498 1498 H4B H4B . E 5 YWO B 1 1499 1499 YWO YWO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YWO . . . E 5 19.108 69.817 21.108 1 20 ? C1 YWO 1499 B 1 HETATM 2 N N1 YWO . . . E 5 20.18 67.717 22.068 1 20 ? N1 YWO 1499 B 1 HETATM 3 O O1 YWO . . . E 5 21.098 69.364 24.153 1 20 ? O1 YWO 1499 B 1 HETATM 4 C C2 YWO . . . E 5 19.873 69.213 22.115 1 20 ? C2 YWO 1499 B 1 HETATM 5 N N2 YWO . . . E 5 22.209 70.724 30.355 1 20 ? N2 YWO 1499 B 1 HETATM 6 O O2 YWO . . . E 5 19.82 67.122 21.014 1 20 ? O2 YWO 1499 B 1 HETATM 7 C C3 YWO . . . E 5 20.37 70.002 23.196 1 20 ? C3 YWO 1499 B 1 HETATM 8 N N3 YWO . . . E 5 24.7 73.41 30.672 1 20 ? N3 YWO 1499 B 1 HETATM 9 O O3 YWO . . . E 5 20.782 67.147 23.045 1 20 ? O3 YWO 1499 B 1 HETATM 10 C C4 YWO . . . E 5 20.093 71.424 23.252 1 20 ? C4 YWO 1499 B 1 HETATM 11 O O4 YWO . . . E 5 24.752 71.228 31.315 1 20 ? O4 YWO 1499 B 1 HETATM 12 C C5 YWO . . . E 5 19.339 72.013 22.245 1 20 ? C5 YWO 1499 B 1 HETATM 13 C C6 YWO . . . E 5 18.843 71.236 21.184 1 20 ? C6 YWO 1499 B 1 HETATM 14 C C7 YWO . . . E 5 21.801 69.944 25.188 1 20 ? C7 YWO 1499 B 1 HETATM 15 C C8 YWO . . . E 5 21.302 69.669 26.43 1 20 ? C8 YWO 1499 B 1 HETATM 16 C C9 YWO . . . E 5 21.986 70.171 27.602 1 20 ? C9 YWO 1499 B 1 HETATM 17 C C10 YWO . . . E 5 23.184 70.954 27.428 1 20 ? C10 YWO 1499 B 1 HETATM 18 C C11 YWO . . . E 5 23.687 71.254 26.113 1 20 ? C11 YWO 1499 B 1 HETATM 19 C C12 YWO . . . E 5 22.994 70.754 24.975 1 20 ? C12 YWO 1499 B 1 HETATM 20 C C13 YWO . . . E 5 19.057 73.426 22.286 1 20 ? C13 YWO 1499 B 1 HETATM 21 C C14 YWO . . . E 5 23.95 71.447 28.66 1 20 ? C14 YWO 1499 B 1 HETATM 22 C C15 YWO . . . E 5 23.103 71.841 29.897 1 20 ? C15 YWO 1499 B 1 HETATM 23 C C16 YWO . . . E 5 24.045 72.238 31.019 1 20 ? C16 YWO 1499 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #