data_4UXX # _model_server_result.job_id Vd_p_VYN8iEX5YDorPFRNQ _model_server_result.datetime_utc '2024-11-25 12:51:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4uxx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1122}' # _entry.id 4UXX # _exptl.entry_id 4UXX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4UXX _cell.length_a 72.94 _cell.length_b 72.94 _cell.length_c 195.76 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UXX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 37 A GLU 28 1_555 E NA NA . A NA 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc2 A OE2 GLU 37 A GLU 28 1_555 E NA NA . A NA 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc3 A OE1 GLU 85 A GLU 76 1_555 E NA NA . A NA 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc4 E NA NA . A NA 1122 1_555 F O ACT . A ACT 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc5 E NA NA . A NA 1122 1_555 F OXT ACT . A ACT 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc6 B OE1 GLU 37 B GLU 28 1_555 N NA NA . B NA 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc7 B OE2 GLU 85 B GLU 76 1_555 N NA NA . B NA 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc8 B OE1 GLU 85 B GLU 76 1_555 N NA NA . B NA 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc9 M OXT ACT . B ACT 1125 1_555 N NA NA . B NA 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc10 M O ACT . B ACT 1125 1_555 N NA NA . B NA 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc11 C OE2 GLU 37 C GLU 28 1_555 O ZN ZN . C ZN 1121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc12 C OE1 GLU 85 C GLU 76 1_555 O ZN ZN . C ZN 1121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc13 C OE2 GLU 85 C GLU 76 1_555 P ZN ZN . C ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc14 C OE1 GLU 97 C GLU 88 4_645 T NA NA . C NA 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc15 C OE1 GLU 97 C GLU 88 1_555 T NA NA . C NA 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc16 O ZN ZN . C ZN 1121 1_555 Q O1B ACP . C ACP 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc17 O ZN ZN . C ZN 1121 1_555 Q O3G ACP . C ACP 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc18 P ZN ZN . C ZN 1122 1_555 Q O1A ACP . C ACP 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc19 P ZN ZN . C ZN 1122 1_555 Q O1G ACP . C ACP 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 294 n n C1 H11 MPD sing 295 n n C1 H12 MPD sing 296 n n C1 H13 MPD sing 297 n n C2 O2 MPD sing 298 n n C2 CM MPD sing 299 n n C2 C3 MPD sing 300 n n O2 HO2 MPD sing 301 n n CM HM1 MPD sing 302 n n CM HM2 MPD sing 303 n n CM HM3 MPD sing 304 n n C3 C4 MPD sing 305 n n C3 H31 MPD sing 306 n n C3 H32 MPD sing 307 n n C4 O4 MPD sing 308 n n C4 C5 MPD sing 309 n n C4 H4 MPD sing 310 n n O4 HO4 MPD sing 311 n n C5 H51 MPD sing 312 n n C5 H52 MPD sing 313 n n C5 H53 MPD sing 314 n n # _atom_sites.entry_id 4UXX _atom_sites.fract_transf_matrix[1][1] 0.01371 _atom_sites.fract_transf_matrix[1][2] 0.007915 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015831 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005108 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CL A 1 1121 1121 CL CL . E 3 NA A 1 1122 1122 NA NA . F 4 ACT A 1 1123 1123 ACT ACT . G 5 OLC A 1 1124 1124 OLC OLC . H 5 OLC A 1 1125 1125 OLC OLC . I 4 ACT A 1 1126 1126 ACT ACT . J 6 MPD B 1 1122 1122 MPD MPD . K 5 OLC B 1 1123 1123 OLC OLC . L 5 OLC B 1 1124 1124 OLC OLC . M 4 ACT B 1 1125 1125 ACT ACT . N 3 NA B 1 1126 1126 NA NA . O 7 ZN C 1 1121 1121 ZN ZN . P 7 ZN C 1 1122 1122 ZN ZN . Q 8 ACP C 1 1123 1123 ACP ACP . R 5 OLC C 1 1124 1124 OLC OLC . S 5 OLC C 1 1125 1125 OLC OLC . T 3 NA C 1 1126 1126 NA NA . U 9 HOH A 1 2001 2001 HOH HOH . U 9 HOH A 2 2002 2002 HOH HOH . U 9 HOH A 3 2003 2003 HOH HOH . U 9 HOH A 4 2004 2004 HOH HOH . U 9 HOH A 5 2005 2005 HOH HOH . U 9 HOH A 6 2006 2006 HOH HOH . V 9 HOH B 1 2001 2001 HOH HOH . V 9 HOH B 2 2002 2002 HOH HOH . V 9 HOH B 3 2003 2003 HOH HOH . W 9 HOH C 1 2001 2001 HOH HOH . W 9 HOH C 2 2002 2002 HOH HOH . W 9 HOH C 3 2003 2003 HOH HOH . W 9 HOH C 4 2004 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . J 6 55.631 -13.656 -0.452 1 147.53 ? C1 MPD 1122 B 1 HETATM 2 C C2 MPD . . . J 6 56.713 -14.323 0.39 1 145.7 ? C2 MPD 1122 B 1 HETATM 3 O O2 MPD . . . J 6 56.172 -14.574 1.711 1 151.6 ? O2 MPD 1122 B 1 HETATM 4 C CM MPD . . . J 6 57.905 -13.378 0.522 1 146.36 ? CM MPD 1122 B 1 HETATM 5 C C3 MPD . . . J 6 57.085 -15.662 -0.245 1 136.17 ? C3 MPD 1122 B 1 HETATM 6 C C4 MPD . . . J 6 58.446 -15.651 -0.928 1 128.89 ? C4 MPD 1122 B 1 HETATM 7 O O4 MPD . . . J 6 59.043 -16.926 -0.818 1 123.72 ? O4 MPD 1122 B 1 HETATM 8 C C5 MPD . . . J 6 58.281 -15.256 -2.392 1 125.16 ? C5 MPD 1122 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #