data_4UY0 # _model_server_result.job_id 5jlMThMrs7P1BuJAxisqHg _model_server_result.datetime_utc '2024-11-22 23:50:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4uy0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1343}' # _entry.id 4UY0 # _exptl.entry_id 4UY0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4UY0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 11 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E MG MG . A MG 1414 1_555 F O1G GTP . A GTP 1415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc2 I O2B ADP . C ADP 1339 1_555 J MG MG . C MG 1340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc3 I O3B ADP . C ADP 1339 1_555 K AL ALF . C ALF 1341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 61 n n PG O2G ANP sing 62 n n PG O3G ANP sing 63 n n PG N3B ANP sing 64 n n O2G HOG2 ANP sing 65 n n O3G HOG3 ANP sing 66 n n PB O1B ANP doub 67 n n PB O2B ANP sing 68 n n PB N3B ANP sing 69 n n PB O3A ANP sing 70 n n O2B HOB2 ANP sing 71 n n N3B HNB1 ANP sing 72 n n PA O1A ANP doub 73 n n PA O2A ANP sing 74 n n PA O3A ANP sing 75 n n PA O5' ANP sing 76 n n O2A HOA2 ANP sing 77 n n O5' C5' ANP sing 78 n n C5' C4' ANP sing 79 n n C5' "H5'1" ANP sing 80 n n C5' "H5'2" ANP sing 81 n n C4' O4' ANP sing 82 n n C4' C3' ANP sing 83 n n C4' H4' ANP sing 84 n n O4' C1' ANP sing 85 n n C3' O3' ANP sing 86 n n C3' C2' ANP sing 87 n n C3' H3' ANP sing 88 n n O3' HO3' ANP sing 89 n n C2' O2' ANP sing 90 n n C2' C1' ANP sing 91 n n C2' H2' ANP sing 92 n n O2' HO2' ANP sing 93 n n C1' N9 ANP sing 94 n n C1' H1' ANP sing 95 n n N9 C8 ANP sing 96 n y N9 C4 ANP sing 97 n y C8 N7 ANP doub 98 n y C8 H8 ANP sing 99 n n N7 C5 ANP sing 100 n y C5 C6 ANP sing 101 n y C5 C4 ANP doub 102 n y C6 N6 ANP sing 103 n n C6 N1 ANP doub 104 n y N6 HN61 ANP sing 105 n n N6 HN62 ANP sing 106 n n N1 C2 ANP sing 107 n y C2 N3 ANP doub 108 n y C2 H2 ANP sing 109 n n N3 C4 ANP sing 110 n y # _atom_sites.entry_id 4UY0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 1413 1413 ZN ZN . E 5 MG A 1 1414 1414 MG MG . F 6 GTP A 1 1415 1415 GTP GTP . G 7 GDP B 1 1427 1427 GDP GDP . H 8 TA1 B 1 1428 1428 TA1 TA1 . I 9 ADP C 1 1339 1339 ADP ADP . J 5 MG C 1 1340 1340 MG MG . K 10 ALF C 1 1341 1341 ALF ALF . L 11 ANP C 1 1343 1343 ANP ANP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol N _atom_site.label_atom_id N7 _atom_site.label_comp_id ANP _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 11 _atom_site.Cartn_x 150.715 _atom_site.Cartn_y 338.863 _atom_site.Cartn_z 244.601 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 9.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id N7 _atom_site.auth_comp_id ANP _atom_site.auth_seq_id 1343 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #