data_4UY0
#
_model_server_result.job_id            SrCOLyuZGu032B_qnvG4Ng 
_model_server_result.datetime_utc      '2024-11-22 23:09:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4uy0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1415}' 
#
_entry.id    4UY0 
#
_exptl.entry_id    4UY0 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4UY0 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4UY0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E MG MG . A MG 1414 1_555 F O1G GTP . A GTP 1415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc2 I O2B ADP . C ADP 1339 1_555 J MG MG . C MG 1340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc3 I O3B ADP . C ADP 1339 1_555 K AL ALF . C ALF 1341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 272 n n 
PG O2G GTP sing 273 n n 
PG O3G GTP sing 274 n n 
PG O3B GTP sing 275 n n 
O2G HOG2 GTP sing 276 n n 
O3G HOG3 GTP sing 277 n n 
O3B PB GTP sing 278 n n 
PB O1B GTP doub 279 n n 
PB O2B GTP sing 280 n n 
PB O3A GTP sing 281 n n 
O2B HOB2 GTP sing 282 n n 
O3A PA GTP sing 283 n n 
PA O1A GTP doub 284 n n 
PA O2A GTP sing 285 n n 
PA O5' GTP sing 286 n n 
O2A HOA2 GTP sing 287 n n 
O5' C5' GTP sing 288 n n 
C5' C4' GTP sing 289 n n 
C5' H5' GTP sing 290 n n 
C5' "H5''" GTP sing 291 n n 
C4' O4' GTP sing 292 n n 
C4' C3' GTP sing 293 n n 
C4' H4' GTP sing 294 n n 
O4' C1' GTP sing 295 n n 
C3' O3' GTP sing 296 n n 
C3' C2' GTP sing 297 n n 
C3' H3' GTP sing 298 n n 
O3' HO3' GTP sing 299 n n 
C2' O2' GTP sing 300 n n 
C2' C1' GTP sing 301 n n 
C2' H2' GTP sing 302 n n 
O2' HO2' GTP sing 303 n n 
C1' N9 GTP sing 304 n n 
C1' H1' GTP sing 305 n n 
N9 C8 GTP sing 306 n y 
N9 C4 GTP sing 307 n y 
C8 N7 GTP doub 308 n y 
C8 H8 GTP sing 309 n n 
N7 C5 GTP sing 310 n y 
C5 C6 GTP sing 311 n n 
C5 C4 GTP doub 312 n y 
C6 O6 GTP doub 313 n n 
C6 N1 GTP sing 314 n n 
N1 C2 GTP sing 315 n n 
N1 HN1 GTP sing 316 n n 
C2 N2 GTP sing 317 n n 
C2 N3 GTP doub 318 n n 
N2 HN21 GTP sing 319 n n 
N2 HN22 GTP sing 320 n n 
N3 C4 GTP sing 321 n n 
#
_atom_sites.entry_id                     4UY0 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 ZN A 1 1413 1413 ZN ZN . 
E 5 MG A 1 1414 1414 MG MG . 
F 6 GTP A 1 1415 1415 GTP GTP . 
G 7 GDP B 1 1427 1427 GDP GDP . 
H 8 TA1 B 1 1428 1428 TA1 TA1 . 
I 9 ADP C 1 1339 1339 ADP ADP . 
J 5 MG C 1 1340 1340 MG MG . 
K 10 ALF C 1 1341 1341 ALF ALF . 
L 11 ANP C 1 1343 1343 ANP ANP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . F 6 187.175 318.139 242.679 1 29.97 ? PG GTP 1415 A 1 
HETATM 2 O O1G GTP . . . F 6 188.456 317.755 243.392 1 28.7 ? O1G GTP 1415 A 1 
HETATM 3 O O2G GTP . . . F 6 186.735 319.575 242.991 1 34.97 ? O2G GTP 1415 A 1 
HETATM 4 O O3G GTP . . . F 6 185.988 317.289 243.12 1 32.1 ? O3G GTP 1415 A 1 
HETATM 5 O O3B GTP . . . F 6 187.537 317.89 241.08 1 35.17 ? O3B GTP 1415 A 1 
HETATM 6 P PB GTP . . . F 6 188.054 316.476 240.407 1 41.4 ? PB GTP 1415 A 1 
HETATM 7 O O1B GTP . . . F 6 189.481 316.534 240.124 1 41.17 ? O1B GTP 1415 A 1 
HETATM 8 O O2B GTP . . . F 6 187.096 316.206 239.258 1 42.02 ? O2B GTP 1415 A 1 
HETATM 9 O O3A GTP . . . F 6 187.687 315.403 241.432 1 39.24 ? O3A GTP 1415 A 1 
HETATM 10 P PA GTP . . . F 6 188.048 313.938 241.658 1 41.34 ? PA GTP 1415 A 1 
HETATM 11 O O1A GTP . . . F 6 187.358 313.494 242.902 1 43.37 ? O1A GTP 1415 A 1 
HETATM 12 O O2A GTP . . . F 6 189.507 313.72 241.619 1 44.48 ? O2A GTP 1415 A 1 
HETATM 13 O O5' GTP . . . F 6 187.304 313.169 240.409 1 34.27 ? O5' GTP 1415 A 1 
HETATM 14 C C5' GTP . . . F 6 187.514 311.768 240.422 1 25.47 ? C5' GTP 1415 A 1 
HETATM 15 C C4' GTP . . . F 6 186.862 310.995 239.321 1 17.26 ? C4' GTP 1415 A 1 
HETATM 16 O O4' GTP . . . F 6 187.73 310.931 238.16 1 18.2 ? O4' GTP 1415 A 1 
HETATM 17 C C3' GTP . . . F 6 186.684 309.567 239.783 1 18.14 ? C3' GTP 1415 A 1 
HETATM 18 O O3' GTP . . . F 6 185.613 308.969 239.089 1 19.98 ? O3' GTP 1415 A 1 
HETATM 19 C C2' GTP . . . F 6 188.036 308.957 239.448 1 17.5 ? C2' GTP 1415 A 1 
HETATM 20 O O2' GTP . . . F 6 187.886 307.549 239.243 1 19.33 ? O2' GTP 1415 A 1 
HETATM 21 C C1' GTP . . . F 6 188.457 309.693 238.167 1 18.43 ? C1' GTP 1415 A 1 
HETATM 22 N N9 GTP . . . F 6 189.892 310.006 238.055 1 9.96 ? N9 GTP 1415 A 1 
HETATM 23 C C8 GTP . . . F 6 190.648 310.745 238.933 1 11.6 ? C8 GTP 1415 A 1 
HETATM 24 N N7 GTP . . . F 6 191.898 310.859 238.575 1 7.31 ? N7 GTP 1415 A 1 
HETATM 25 C C5 GTP . . . F 6 191.985 310.147 237.404 1 2 ? C5 GTP 1415 A 1 
HETATM 26 C C6 GTP . . . F 6 193.076 309.906 236.57 1 3.48 ? C6 GTP 1415 A 1 
HETATM 27 O O6 GTP . . . F 6 194.222 310.319 236.728 1 2.56 ? O6 GTP 1415 A 1 
HETATM 28 N N1 GTP . . . F 6 192.755 309.121 235.44 1 2 ? N1 GTP 1415 A 1 
HETATM 29 C C2 GTP . . . F 6 191.502 308.619 235.165 1 2 ? C2 GTP 1415 A 1 
HETATM 30 N N2 GTP . . . F 6 191.383 307.903 234.085 1 2 ? N2 GTP 1415 A 1 
HETATM 31 N N3 GTP . . . F 6 190.45 308.831 235.956 1 2 ? N3 GTP 1415 A 1 
HETATM 32 C C4 GTP . . . F 6 190.745 309.604 237.052 1 3.56 ? C4 GTP 1415 A 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#