data_4UYL # _model_server_result.job_id zEZs7jFjxScURGSkk-DoTQ _model_server_result.datetime_utc '2024-11-30 01:53:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4uyl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":590}' # _entry.id 4UYL # _exptl.entry_id 4UYL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 504.367 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1R)-1-(2,4-dichlorophenyl)-2-(1H-imidazol-1-yl)ethyl]-4-(5-phenyl-1,3,4-oxadiazol-2-yl)benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4UYL _cell.length_a 110.498 _cell.length_b 110.498 _cell.length_c 90.479 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UYL _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 414 A CYS 463 1_555 C FE HEM . A HEM 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc2 C FE HEM . A HEM 580 1_555 D N3 VNI . A VNI 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc3 B SG CYS 414 B CYS 463 1_555 E FE HEM . B HEM 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc4 E FE HEM . B HEM 580 1_555 F N3 VNI . B VNI 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C26 H19 Cl2 N5 O2' _chem_comp.formula_weight 504.367 _chem_comp.id VNI _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1R)-1-(2,4-dichlorophenyl)-2-(1H-imidazol-1-yl)ethyl]-4-(5-phenyl-1,3,4-oxadiazol-2-yl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 VNI doub 458 n n C13 C1 VNI sing 459 n n N1 C1 VNI sing 460 n n N1 C2 VNI sing 461 n n N1 HN1 VNI sing 462 n n C7 C2 VNI sing 463 n n C3 C2 VNI sing 464 n n C2 H2 VNI sing 465 n n C3 N2 VNI sing 466 n n C3 H3 VNI sing 467 n n C3 H3A VNI sing 468 n n C6 N2 VNI sing 469 n y N2 C4 VNI sing 470 n y C4 C5 VNI doub 471 n y C4 H4 VNI sing 472 n n N3 C5 VNI sing 473 n y C5 H5 VNI sing 474 n n C6 N3 VNI doub 475 n y C6 H6 VNI sing 476 n n C8 C7 VNI doub 477 n y C7 C12 VNI sing 478 n y C9 C8 VNI sing 479 n y C8 H8 VNI sing 480 n n C9 C10 VNI doub 481 n y C9 H9 VNI sing 482 n n CL1 C10 VNI sing 483 n n C10 C11 VNI sing 484 n y C11 C12 VNI doub 485 n y C11 H11 VNI sing 486 n n C12 CL2 VNI sing 487 n n C14 C13 VNI doub 488 n y C13 C18 VNI sing 489 n y C15 C14 VNI sing 490 n y C14 H14 VNI sing 491 n n C15 C16 VNI doub 492 n y C15 H15 VNI sing 493 n n C19 C16 VNI sing 494 n y C16 C17 VNI sing 495 n y C17 C18 VNI doub 496 n y C17 H17 VNI sing 497 n n C18 H18 VNI sing 498 n n N4 C19 VNI doub 499 n y C19 O2 VNI sing 500 n y N5 N4 VNI sing 501 n y N5 C20 VNI doub 502 n y C20 C21 VNI sing 503 n y C20 O2 VNI sing 504 n y C26 C21 VNI doub 505 n y C21 C22 VNI sing 506 n y C22 C23 VNI doub 507 n y C22 H22 VNI sing 508 n n C24 C23 VNI sing 509 n y C23 H23 VNI sing 510 n n C25 C24 VNI doub 511 n y C24 H24 VNI sing 512 n n C26 C25 VNI sing 513 n y C25 H25 VNI sing 514 n n C26 H26 VNI sing 515 n n # _atom_sites.entry_id 4UYL _atom_sites.fract_transf_matrix[1][1] 0.00905 _atom_sites.fract_transf_matrix[1][2] 0.005225 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01045 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 580 580 HEM HEM . D 3 VNI A 1 590 590 VNI VNI . E 2 HEM B 1 580 580 HEM HEM . F 3 VNI B 1 590 590 VNI VNI . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . G 4 HOH A 17 2017 2017 HOH HOH . G 4 HOH A 18 2018 2018 HOH HOH . G 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH A 20 2020 2020 HOH HOH . G 4 HOH A 21 2021 2021 HOH HOH . G 4 HOH A 22 2022 2022 HOH HOH . G 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH A 24 2024 2024 HOH HOH . G 4 HOH A 25 2025 2025 HOH HOH . G 4 HOH A 26 2026 2026 HOH HOH . G 4 HOH A 27 2027 2027 HOH HOH . G 4 HOH A 28 2028 2028 HOH HOH . G 4 HOH A 29 2029 2029 HOH HOH . G 4 HOH A 30 2030 2030 HOH HOH . G 4 HOH A 31 2031 2031 HOH HOH . G 4 HOH A 32 2032 2032 HOH HOH . G 4 HOH A 33 2033 2033 HOH HOH . G 4 HOH A 34 2034 2034 HOH HOH . G 4 HOH A 35 2035 2035 HOH HOH . G 4 HOH A 36 2036 2036 HOH HOH . G 4 HOH A 37 2037 2037 HOH HOH . G 4 HOH A 38 2038 2038 HOH HOH . G 4 HOH A 39 2039 2039 HOH HOH . G 4 HOH A 40 2040 2040 HOH HOH . G 4 HOH A 41 2041 2041 HOH HOH . G 4 HOH A 42 2042 2042 HOH HOH . G 4 HOH A 43 2043 2043 HOH HOH . G 4 HOH A 44 2044 2044 HOH HOH . G 4 HOH A 45 2045 2045 HOH HOH . G 4 HOH A 46 2046 2046 HOH HOH . G 4 HOH A 47 2047 2047 HOH HOH . G 4 HOH A 48 2048 2048 HOH HOH . G 4 HOH A 49 2049 2049 HOH HOH . G 4 HOH A 50 2050 2050 HOH HOH . G 4 HOH A 51 2051 2051 HOH HOH . G 4 HOH A 52 2052 2052 HOH HOH . G 4 HOH A 53 2053 2053 HOH HOH . G 4 HOH A 54 2054 2054 HOH HOH . G 4 HOH A 55 2055 2055 HOH HOH . G 4 HOH A 56 2056 2056 HOH HOH . G 4 HOH A 57 2057 2057 HOH HOH . G 4 HOH A 58 2058 2058 HOH HOH . G 4 HOH A 59 2059 2059 HOH HOH . G 4 HOH A 60 2060 2060 HOH HOH . G 4 HOH A 61 2061 2061 HOH HOH . G 4 HOH A 62 2062 2062 HOH HOH . G 4 HOH A 63 2063 2063 HOH HOH . G 4 HOH A 64 2064 2064 HOH HOH . G 4 HOH A 65 2065 2065 HOH HOH . G 4 HOH A 66 2066 2066 HOH HOH . G 4 HOH A 67 2067 2067 HOH HOH . G 4 HOH A 68 2068 2068 HOH HOH . G 4 HOH A 69 2069 2069 HOH HOH . G 4 HOH A 70 2070 2070 HOH HOH . G 4 HOH A 71 2071 2071 HOH HOH . G 4 HOH A 72 2072 2072 HOH HOH . G 4 HOH A 73 2073 2073 HOH HOH . G 4 HOH A 74 2074 2074 HOH HOH . G 4 HOH A 75 2075 2075 HOH HOH . G 4 HOH A 76 2076 2076 HOH HOH . G 4 HOH A 77 2077 2077 HOH HOH . G 4 HOH A 78 2078 2078 HOH HOH . G 4 HOH A 79 2079 2079 HOH HOH . G 4 HOH A 80 2080 2080 HOH HOH . G 4 HOH A 81 2081 2081 HOH HOH . G 4 HOH A 82 2082 2082 HOH HOH . G 4 HOH A 83 2083 2083 HOH HOH . G 4 HOH A 84 2084 2084 HOH HOH . G 4 HOH A 85 2085 2085 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . H 4 HOH B 8 2008 2008 HOH HOH . H 4 HOH B 9 2009 2009 HOH HOH . H 4 HOH B 10 2010 2010 HOH HOH . H 4 HOH B 11 2011 2011 HOH HOH . H 4 HOH B 12 2012 2012 HOH HOH . H 4 HOH B 13 2013 2013 HOH HOH . H 4 HOH B 14 2014 2014 HOH HOH . H 4 HOH B 15 2015 2015 HOH HOH . H 4 HOH B 16 2016 2016 HOH HOH . H 4 HOH B 17 2017 2017 HOH HOH . H 4 HOH B 18 2018 2018 HOH HOH . H 4 HOH B 19 2019 2019 HOH HOH . H 4 HOH B 20 2020 2020 HOH HOH . H 4 HOH B 21 2021 2021 HOH HOH . H 4 HOH B 22 2022 2022 HOH HOH . H 4 HOH B 23 2023 2023 HOH HOH . H 4 HOH B 24 2024 2024 HOH HOH . H 4 HOH B 25 2025 2025 HOH HOH . H 4 HOH B 26 2026 2026 HOH HOH . H 4 HOH B 27 2027 2027 HOH HOH . H 4 HOH B 28 2028 2028 HOH HOH . H 4 HOH B 29 2029 2029 HOH HOH . H 4 HOH B 30 2030 2030 HOH HOH . H 4 HOH B 31 2031 2031 HOH HOH . H 4 HOH B 32 2032 2032 HOH HOH . H 4 HOH B 33 2033 2033 HOH HOH . H 4 HOH B 34 2034 2034 HOH HOH . H 4 HOH B 35 2035 2035 HOH HOH . H 4 HOH B 36 2036 2036 HOH HOH . H 4 HOH B 37 2037 2037 HOH HOH . H 4 HOH B 38 2038 2038 HOH HOH . H 4 HOH B 39 2039 2039 HOH HOH . H 4 HOH B 40 2040 2040 HOH HOH . H 4 HOH B 41 2041 2041 HOH HOH . H 4 HOH B 42 2042 2042 HOH HOH . H 4 HOH B 43 2043 2043 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 VNI . . . D 3 137.18 10.242 10.152 1 90.86 ? O1 VNI 590 A 1 HETATM 2 C C1 VNI . . . D 3 137.89 9.271 10.093 1 90.71 ? C1 VNI 590 A 1 HETATM 3 N N1 VNI . . . D 3 137.442 8.067 9.81 1 79.46 ? N1 VNI 590 A 1 HETATM 4 C C2 VNI . . . D 3 136.061 7.857 9.496 1 73.63 ? C2 VNI 590 A 1 HETATM 5 C C3 VNI . . . D 3 135.882 8.095 8.026 1 69.62 ? C3 VNI 590 A 1 HETATM 6 N N2 VNI . . . D 3 134.596 7.633 7.549 1 80.09 ? N2 VNI 590 A 1 HETATM 7 C C4 VNI . . . D 3 133.398 8.129 7.807 1 76.97 ? C4 VNI 590 A 1 HETATM 8 C C5 VNI . . . D 3 132.484 7.389 7.114 1 71.76 ? C5 VNI 590 A 1 HETATM 9 N N3 VNI . . . D 3 133.171 6.477 6.44 1 83.04 ? N3 VNI 590 A 1 HETATM 10 C C6 VNI . . . D 3 134.456 6.63 6.713 1 86.54 ? C6 VNI 590 A 1 HETATM 11 C C7 VNI . . . D 3 135.778 6.472 9.839 1 61.3 ? C7 VNI 590 A 1 HETATM 12 C C8 VNI . . . D 3 136.026 5.422 9.007 1 57.31 ? C8 VNI 590 A 1 HETATM 13 C C9 VNI . . . D 3 135.737 4.151 9.451 1 58.56 ? C9 VNI 590 A 1 HETATM 14 C C10 VNI . . . D 3 135.207 3.937 10.693 1 56.27 ? C10 VNI 590 A 1 HETATM 15 CL CL1 VNI . . . D 3 134.822 2.343 11.283 1 59.25 ? CL1 VNI 590 A 1 HETATM 16 C C11 VNI . . . D 3 134.955 4.946 11.547 1 62.28 ? C11 VNI 590 A 1 HETATM 17 C C12 VNI . . . D 3 135.228 6.202 11.154 1 65.44 ? C12 VNI 590 A 1 HETATM 18 CL CL2 VNI . . . D 3 134.866 7.459 12.302 1 68.53 ? CL2 VNI 590 A 1 HETATM 19 C C13 VNI . . . D 3 139.336 9.437 10.338 1 99.53 ? C13 VNI 590 A 1 HETATM 20 C C14 VNI . . . D 3 139.876 10.684 10.572 1 97.57 ? C14 VNI 590 A 1 HETATM 21 C C15 VNI . . . D 3 141.231 10.816 10.785 1 95.95 ? C15 VNI 590 A 1 HETATM 22 C C16 VNI . . . D 3 142.01 9.686 10.781 1 97.74 ? C16 VNI 590 A 1 HETATM 23 C C17 VNI . . . D 3 141.474 8.454 10.527 1 95.3 ? C17 VNI 590 A 1 HETATM 24 C C18 VNI . . . D 3 140.129 8.319 10.309 1 98.03 ? C18 VNI 590 A 1 HETATM 25 C C19 VNI . . . D 3 143.459 9.762 10.983 1 101.64 ? C19 VNI 590 A 1 HETATM 26 N N4 VNI . . . D 3 144.214 8.947 11.721 1 97.61 ? N4 VNI 590 A 1 HETATM 27 N N5 VNI . . . D 3 145.529 9.386 11.613 1 103.44 ? N5 VNI 590 A 1 HETATM 28 C C20 VNI . . . D 3 145.514 10.431 10.793 1 104.54 ? C20 VNI 590 A 1 HETATM 29 O O2 VNI . . . D 3 144.247 10.687 10.416 1 98.86 ? O2 VNI 590 A 1 HETATM 30 C C21 VNI . . . D 3 146.665 11.242 10.389 1 97.73 ? C21 VNI 590 A 1 HETATM 31 C C22 VNI . . . D 3 147.856 11.127 11.06 1 90.46 ? C22 VNI 590 A 1 HETATM 32 C C23 VNI . . . D 3 148.905 11.911 10.654 1 93.03 ? C23 VNI 590 A 1 HETATM 33 C C24 VNI . . . D 3 148.737 12.806 9.615 1 88.81 ? C24 VNI 590 A 1 HETATM 34 C C25 VNI . . . D 3 147.534 12.93 8.966 1 82.42 ? C25 VNI 590 A 1 HETATM 35 C C26 VNI . . . D 3 146.489 12.14 9.364 1 89.78 ? C26 VNI 590 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #