data_4UYO # _model_server_result.job_id AL89srBc5eW84JGiUrb6Nw _model_server_result.datetime_utc '2024-11-25 15:54:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4uyo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1122}' # _entry.id 4UYO # _exptl.entry_id 4UYO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 328.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (7Z)-hexadec-7-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4UYO _cell.length_a 75.3 _cell.length_b 91.8 _cell.length_c 141.7 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UYO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,R,S,T 1 1 D,E,F,L,M,N,O,P,Q,U,V,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 O N N ? 3 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D OE1 GLU 37 D GLU 28 1_555 L ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc2 D OE2 GLU 37 D GLU 28 1_555 L ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc3 D OE1 GLU 85 D GLU 76 1_555 L ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc4 D OE2 GLU 85 D GLU 76 1_555 L ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc5 L ZN ZN . D ZN 1122 1_555 P OA2 FLC . D FLC 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc6 L ZN ZN . D ZN 1122 1_555 U O HOH . D HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? # _chem_comp.formula 'C19 H36 O4' _chem_comp.formula_weight 328.487 _chem_comp.id 79M _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (7Z)-hexadec-7-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[(2R)-2,3-bis(oxidanyl)propyl] (Z)-hexadec-7-enoate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 79M sing 1 n n C1 O19 79M doub 2 n n C1 O20 79M sing 3 n n C2 C3 79M sing 4 n n C3 C4 79M sing 5 n n C4 C5 79M sing 6 n n C5 C6 79M sing 7 n n C6 C7 79M sing 8 n n C7 C8 79M doub 9 z n C8 C9 79M sing 10 n n C9 C10 79M sing 11 n n C10 C11 79M sing 12 n n C11 C12 79M sing 13 n n C12 C13 79M sing 14 n n C13 C14 79M sing 15 n n C14 C15 79M sing 16 n n C15 C19 79M sing 17 n n O20 C21 79M sing 18 n n C21 C22 79M sing 19 n n C22 O23 79M sing 20 n n C22 C24 79M sing 21 n n C24 O25 79M sing 22 n n C2 H21C 79M sing 23 n n C2 H22C 79M sing 24 n n C3 H31C 79M sing 25 n n C3 H32C 79M sing 26 n n C4 H41C 79M sing 27 n n C4 H42C 79M sing 28 n n C5 H51C 79M sing 29 n n C5 H52C 79M sing 30 n n C6 H61C 79M sing 31 n n C6 H62C 79M sing 32 n n C7 H7 79M sing 33 n n C8 H8 79M sing 34 n n C9 H91 79M sing 35 n n C9 H92 79M sing 36 n n C10 H101 79M sing 37 n n C10 H102 79M sing 38 n n C11 H111 79M sing 39 n n C11 H112 79M sing 40 n n C12 H121 79M sing 41 n n C12 H122 79M sing 42 n n C13 H131 79M sing 43 n n C13 H132 79M sing 44 n n C14 H141 79M sing 45 n n C14 H142 79M sing 46 n n C15 H151 79M sing 47 n n C15 H152 79M sing 48 n n C19 H191 79M sing 49 n n C19 H192 79M sing 50 n n C19 H193 79M sing 51 n n C21 H211 79M sing 52 n n C21 H212 79M sing 53 n n C22 H22 79M sing 54 n n O23 H23 79M sing 55 n n C24 H241 79M sing 56 n n C24 H242 79M sing 57 n n O25 H25 79M sing 58 n n # _atom_sites.entry_id 4UYO _atom_sites.fract_transf_matrix[1][1] 0.01328 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010893 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007057 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 79N A 1 1122 1122 79N 79N . H 3 79M B 1 1122 1122 79M 79M . I 2 79N B 1 1123 1123 79N 79N . J 3 79M B 1 1124 1124 79M 79M . K 2 79N C 1 1122 1122 79N 79N . L 4 ZN D 1 1122 1122 ZN ZN . M 2 79N D 1 1123 1123 79N 79N . N 2 79N D 1 1124 1124 79N 79N . O 3 79M D 1 1125 1125 79M 79M . P 5 FLC D 1 1126 1126 FLC FLC . Q 3 79M F 1 1121 1121 79M 79M . R 6 HOH A 1 2001 2001 HOH HOH . R 6 HOH A 2 2002 2002 HOH HOH . R 6 HOH A 3 2003 2003 HOH HOH . R 6 HOH A 4 2004 2004 HOH HOH . R 6 HOH A 5 2005 2005 HOH HOH . R 6 HOH A 6 2006 2006 HOH HOH . R 6 HOH A 7 2007 2007 HOH HOH . R 6 HOH A 8 2008 2008 HOH HOH . R 6 HOH A 9 2009 2009 HOH HOH . R 6 HOH A 10 2010 2010 HOH HOH . R 6 HOH A 11 2011 2011 HOH HOH . R 6 HOH A 12 2012 2012 HOH HOH . R 6 HOH A 13 2013 2013 HOH HOH . R 6 HOH A 14 2014 2014 HOH HOH . R 6 HOH A 15 2015 2015 HOH HOH . R 6 HOH A 16 2016 2016 HOH HOH . S 6 HOH B 1 2001 2001 HOH HOH . S 6 HOH B 2 2002 2002 HOH HOH . S 6 HOH B 3 2003 2003 HOH HOH . S 6 HOH B 4 2004 2004 HOH HOH . S 6 HOH B 5 2005 2005 HOH HOH . S 6 HOH B 6 2006 2006 HOH HOH . S 6 HOH B 7 2007 2007 HOH HOH . S 6 HOH B 8 2008 2008 HOH HOH . S 6 HOH B 9 2009 2009 HOH HOH . S 6 HOH B 10 2010 2010 HOH HOH . T 6 HOH C 1 2001 2001 HOH HOH . T 6 HOH C 2 2002 2002 HOH HOH . T 6 HOH C 3 2003 2003 HOH HOH . T 6 HOH C 4 2004 2004 HOH HOH . T 6 HOH C 5 2005 2005 HOH HOH . U 6 HOH D 1 2001 2001 HOH HOH . U 6 HOH D 2 2002 2002 HOH HOH . U 6 HOH D 3 2003 2003 HOH HOH . U 6 HOH D 4 2004 2004 HOH HOH . U 6 HOH D 5 2005 2005 HOH HOH . U 6 HOH D 6 2006 2006 HOH HOH . U 6 HOH D 7 2007 2007 HOH HOH . U 6 HOH D 8 2008 2008 HOH HOH . U 6 HOH D 9 2009 2009 HOH HOH . U 6 HOH D 10 2010 2010 HOH HOH . U 6 HOH D 11 2011 2011 HOH HOH . U 6 HOH D 12 2012 2012 HOH HOH . U 6 HOH D 13 2013 2013 HOH HOH . U 6 HOH D 14 2014 2014 HOH HOH . U 6 HOH D 15 2015 2015 HOH HOH . U 6 HOH D 16 2016 2016 HOH HOH . U 6 HOH D 17 2017 2017 HOH HOH . U 6 HOH D 18 2018 2018 HOH HOH . U 6 HOH D 19 2019 2019 HOH HOH . U 6 HOH D 20 2020 2020 HOH HOH . U 6 HOH D 21 2021 2021 HOH HOH . U 6 HOH D 22 2022 2022 HOH HOH . U 6 HOH D 23 2023 2023 HOH HOH . U 6 HOH D 24 2024 2024 HOH HOH . U 6 HOH D 25 2025 2025 HOH HOH . U 6 HOH D 26 2026 2026 HOH HOH . U 6 HOH D 27 2027 2027 HOH HOH . U 6 HOH D 28 2028 2028 HOH HOH . U 6 HOH D 29 2029 2029 HOH HOH . U 6 HOH D 30 2030 2030 HOH HOH . V 6 HOH E 1 2001 2001 HOH HOH . V 6 HOH E 2 2002 2002 HOH HOH . V 6 HOH E 3 2003 2003 HOH HOH . V 6 HOH E 4 2004 2004 HOH HOH . V 6 HOH E 5 2005 2005 HOH HOH . V 6 HOH E 6 2006 2006 HOH HOH . V 6 HOH E 7 2007 2007 HOH HOH . V 6 HOH E 8 2008 2008 HOH HOH . V 6 HOH E 9 2009 2009 HOH HOH . V 6 HOH E 10 2010 2010 HOH HOH . W 6 HOH F 1 2001 2001 HOH HOH . W 6 HOH F 2 2002 2002 HOH HOH . W 6 HOH F 3 2003 2003 HOH HOH . W 6 HOH F 4 2004 2004 HOH HOH . W 6 HOH F 5 2005 2005 HOH HOH . W 6 HOH F 6 2006 2006 HOH HOH . W 6 HOH F 7 2007 2007 HOH HOH . W 6 HOH F 8 2008 2008 HOH HOH . W 6 HOH F 9 2009 2009 HOH HOH . W 6 HOH F 10 2010 2010 HOH HOH . W 6 HOH F 11 2011 2011 HOH HOH . W 6 HOH F 12 2012 2012 HOH HOH . W 6 HOH F 13 2013 2013 HOH HOH . W 6 HOH F 14 2014 2014 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C19 79M . . . H 3 -30.75 20.876 1.955 1 76.65 ? C19 79M 1122 B 1 HETATM 2 C C8 79M . . . H 3 -24.583 13.107 2.883 1 68.72 ? C8 79M 1122 B 1 HETATM 3 C C7 79M . . . H 3 -24.336 12.19 3.79 1 70.45 ? C7 79M 1122 B 1 HETATM 4 C C15 79M . . . H 3 -30.264 19.655 2.688 1 75.82 ? C15 79M 1122 B 1 HETATM 5 C C9 79M . . . H 3 -25.907 13.379 2.259 1 67.36 ? C9 79M 1122 B 1 HETATM 6 C C6 79M . . . H 3 -25.327 11.227 4.338 1 65.95 ? C6 79M 1122 B 1 HETATM 7 C C21 79M . . . H 3 -20.905 13.289 9.352 1 76.71 ? C21 79M 1122 B 1 HETATM 8 C C14 79M . . . H 3 -29.233 18.863 1.902 1 101.39 ? C14 79M 1122 B 1 HETATM 9 C C10 79M . . . H 3 -26.121 14.882 2.143 1 59.51 ? C10 79M 1122 B 1 HETATM 10 C C5 79M . . . H 3 -25.072 10.753 5.772 1 68.18 ? C5 79M 1122 B 1 HETATM 11 C C13 79M . . . H 3 -28.904 17.496 2.491 1 93.04 ? C13 79M 1122 B 1 HETATM 12 C C11 79M . . . H 3 -27.564 15.339 2.215 1 60.22 ? C11 79M 1122 B 1 HETATM 13 C C4 79M . . . H 3 -25.427 11.772 6.865 1 77.85 ? C4 79M 1122 B 1 HETATM 14 C C12 79M . . . H 3 -27.743 16.792 1.809 1 77.45 ? C12 79M 1122 B 1 HETATM 15 C C3 79M . . . H 3 -24.273 12.652 7.265 1 57.18 ? C3 79M 1122 B 1 HETATM 16 C C2 79M . . . H 3 -24.512 13.431 8.544 1 66.99 ? C2 79M 1122 B 1 HETATM 17 C C24 79M . . . H 3 -21.217 13.017 11.851 1 85.5 ? C24 79M 1122 B 1 HETATM 18 C C22 79M . . . H 3 -20.418 12.632 10.628 1 86.58 ? C22 79M 1122 B 1 HETATM 19 O O19 79M . . . H 3 -23.025 14.953 9.666 1 88.09 ? O19 79M 1122 B 1 HETATM 20 C C1 79M . . . H 3 -23.212 13.886 9.142 1 91.75 ? C1 79M 1122 B 1 HETATM 21 O O20 79M . . . H 3 -22.269 12.941 9.011 1 99.77 ? O20 79M 1122 B 1 HETATM 22 O O23 79M . . . H 3 -20.332 11.21 10.509 1 75.38 ? O23 79M 1122 B 1 HETATM 23 O O25 79M . . . H 3 -20.608 12.489 13.024 1 108.85 ? O25 79M 1122 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #