data_4UYU # _model_server_result.job_id EXpy0V-v6Gtmt9T2nS7Skg _model_server_result.datetime_utc '2024-11-05 21:24:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4uyu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1452}' # _entry.id 4UYU # _exptl.entry_id 4UYU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4UYU _cell.length_a 74.22 _cell.length_b 177.564 _cell.length_c 60.991 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UYU _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,R 1 1 B,J,K,L,M,N,O,P,Q,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? disulf ? disulf5 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf7 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf8 B SG CYS 24 B CYS 101 1_555 B SG CYS 106 B CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf9 B SG CYS 53 B CYS 130 1_555 B SG CYS 59 B CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 B SG CYS 202 B CYS 279 1_555 B SG CYS 208 B CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf11 B SG CYS 229 B CYS 306 1_555 B SG CYS 241 B CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf12 B SG CYS 309 B CYS 386 1_555 B SG CYS 372 B CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf13 B SG CYS 336 B CYS 413 1_555 B SG CYS 355 B CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf14 B SG CYS 363 B CYS 440 1_555 B SG CYS 368 B CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 1452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 B ND2 ASN 19 B ASN 96 1_555 J C1 NAG . B NAG 1452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4UYU _atom_sites.fract_transf_matrix[1][1] 0.013473 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005632 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 1452 1452 NAG NAG . D 3 IOD A 1 1453 1453 IOD IOD . E 3 IOD A 1 1454 1454 IOD IOD . F 3 IOD A 1 1455 1455 IOD IOD . G 4 CL A 1 1456 1456 CL CL . H 3 IOD A 1 1457 1457 IOD IOD . I 3 IOD A 1 1458 1458 IOD IOD . J 2 NAG B 1 1452 1452 NAG NAG . K 3 IOD B 1 1453 1453 IOD IOD . L 3 IOD B 1 1454 1454 IOD IOD . M 3 IOD B 1 1455 1455 IOD IOD . N 3 IOD B 1 1456 1456 IOD IOD . O 3 IOD B 1 1457 1457 IOD IOD . P 3 IOD B 1 1458 1458 IOD IOD . Q 4 CL B 1 1459 1459 CL CL . R 5 HOH A 1 2001 2001 HOH HOH . R 5 HOH A 2 2002 2002 HOH HOH . R 5 HOH A 3 2003 2003 HOH HOH . R 5 HOH A 4 2004 2004 HOH HOH . R 5 HOH A 5 2005 2005 HOH HOH . R 5 HOH A 6 2006 2006 HOH HOH . R 5 HOH A 7 2007 2007 HOH HOH . R 5 HOH A 8 2008 2008 HOH HOH . R 5 HOH A 9 2009 2009 HOH HOH . R 5 HOH A 10 2010 2010 HOH HOH . R 5 HOH A 11 2011 2011 HOH HOH . R 5 HOH A 12 2012 2012 HOH HOH . R 5 HOH A 13 2013 2013 HOH HOH . R 5 HOH A 14 2014 2014 HOH HOH . R 5 HOH A 15 2015 2015 HOH HOH . R 5 HOH A 16 2016 2016 HOH HOH . R 5 HOH A 17 2017 2017 HOH HOH . R 5 HOH A 18 2018 2018 HOH HOH . R 5 HOH A 19 2019 2019 HOH HOH . R 5 HOH A 20 2020 2020 HOH HOH . R 5 HOH A 21 2021 2021 HOH HOH . R 5 HOH A 22 2022 2022 HOH HOH . R 5 HOH A 23 2023 2023 HOH HOH . R 5 HOH A 24 2024 2024 HOH HOH . R 5 HOH A 25 2025 2025 HOH HOH . R 5 HOH A 26 2026 2026 HOH HOH . R 5 HOH A 27 2027 2027 HOH HOH . R 5 HOH A 28 2028 2028 HOH HOH . R 5 HOH A 29 2029 2029 HOH HOH . R 5 HOH A 30 2030 2030 HOH HOH . R 5 HOH A 31 2031 2031 HOH HOH . R 5 HOH A 32 2032 2032 HOH HOH . R 5 HOH A 33 2033 2033 HOH HOH . R 5 HOH A 34 2034 2034 HOH HOH . R 5 HOH A 35 2035 2035 HOH HOH . R 5 HOH A 36 2036 2036 HOH HOH . R 5 HOH A 37 2037 2037 HOH HOH . R 5 HOH A 38 2038 2038 HOH HOH . R 5 HOH A 39 2039 2039 HOH HOH . R 5 HOH A 40 2040 2040 HOH HOH . R 5 HOH A 41 2041 2041 HOH HOH . R 5 HOH A 42 2042 2042 HOH HOH . S 5 HOH B 1 2001 2001 HOH HOH . S 5 HOH B 2 2002 2002 HOH HOH . S 5 HOH B 3 2003 2003 HOH HOH . S 5 HOH B 4 2004 2004 HOH HOH . S 5 HOH B 5 2005 2005 HOH HOH . S 5 HOH B 6 2006 2006 HOH HOH . S 5 HOH B 7 2007 2007 HOH HOH . S 5 HOH B 8 2008 2008 HOH HOH . S 5 HOH B 9 2009 2009 HOH HOH . S 5 HOH B 10 2010 2010 HOH HOH . S 5 HOH B 11 2011 2011 HOH HOH . S 5 HOH B 12 2012 2012 HOH HOH . S 5 HOH B 13 2013 2013 HOH HOH . S 5 HOH B 14 2014 2014 HOH HOH . S 5 HOH B 15 2015 2015 HOH HOH . S 5 HOH B 16 2016 2016 HOH HOH . S 5 HOH B 17 2017 2017 HOH HOH . S 5 HOH B 18 2018 2018 HOH HOH . S 5 HOH B 19 2019 2019 HOH HOH . S 5 HOH B 20 2020 2020 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 2 7.538 -31.654 -16.45 1 63.88 ? C1 NAG 1452 B 1 HETATM 2 C C2 NAG . . . J 2 6.219 -32.322 -16.088 1 67.64 ? C2 NAG 1452 B 1 HETATM 3 C C3 NAG . . . J 2 4.976 -31.573 -16.588 1 68.54 ? C3 NAG 1452 B 1 HETATM 4 C C4 NAG . . . J 2 5.155 -30.052 -16.706 1 67.42 ? C4 NAG 1452 B 1 HETATM 5 C C5 NAG . . . J 2 6.568 -29.62 -17.116 1 64.67 ? C5 NAG 1452 B 1 HETATM 6 C C6 NAG . . . J 2 6.754 -28.113 -16.952 1 63.01 ? C6 NAG 1452 B 1 HETATM 7 C C7 NAG . . . J 2 6.138 -34.781 -15.807 1 71.96 ? C7 NAG 1452 B 1 HETATM 8 C C8 NAG . . . J 2 6.195 -36.108 -16.519 1 72.46 ? C8 NAG 1452 B 1 HETATM 9 N N2 NAG . . . J 2 6.255 -33.693 -16.591 1 69.78 ? N2 NAG 1452 B 1 HETATM 10 O O3 NAG . . . J 2 3.937 -31.815 -15.661 1 69.58 ? O3 NAG 1452 B 1 HETATM 11 O O4 NAG . . . J 2 4.238 -29.525 -17.64 1 67.03 ? O4 NAG 1452 B 1 HETATM 12 O O5 NAG . . . J 2 7.504 -30.258 -16.29 1 62.18 ? O5 NAG 1452 B 1 HETATM 13 O O6 NAG . . . J 2 6.572 -27.764 -15.59 1 61.51 ? O6 NAG 1452 B 1 HETATM 14 O O7 NAG . . . J 2 5.981 -34.751 -14.576 1 71.42 ? O7 NAG 1452 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #