data_4UZV # _model_server_result.job_id m-HTfzOHwF5rGN4U46wyLQ _model_server_result.datetime_utc '2025-03-13 21:33:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4uzv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1157}' # _entry.id 4UZV # _exptl.entry_id 4UZV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4UZV _cell.length_a 78.367 _cell.length_b 78.367 _cell.length_c 89.806 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UZV _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/4 0 -1 0 -1 0 0 0 0 -1 0 0 22.4515 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 106 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 106 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 1157 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.135 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 122 n n CHA C4D HEM doub 123 n n CHA HHA HEM sing 124 n n CHB C4A HEM sing 125 n n CHB C1B HEM doub 126 n n CHB HHB HEM sing 127 n n CHC C4B HEM sing 128 n n CHC C1C HEM doub 129 n n CHC HHC HEM sing 130 n n CHD C4C HEM doub 131 n n CHD C1D HEM sing 132 n n CHD HHD HEM sing 133 n n C1A C2A HEM doub 134 n y C1A NA HEM sing 135 n y C2A C3A HEM sing 136 n y C2A CAA HEM sing 137 n n C3A C4A HEM doub 138 n y C3A CMA HEM sing 139 n n C4A NA HEM sing 140 n y CMA HMA HEM sing 141 n n CMA HMAA HEM sing 142 n n CMA HMAB HEM sing 143 n n CAA CBA HEM sing 144 n n CAA HAA HEM sing 145 n n CAA HAAA HEM sing 146 n n CBA CGA HEM sing 147 n n CBA HBA HEM sing 148 n n CBA HBAA HEM sing 149 n n CGA O1A HEM doub 150 n n CGA O2A HEM sing 151 n n C1B C2B HEM sing 152 n n C1B NB HEM sing 153 n n C2B C3B HEM doub 154 n n C2B CMB HEM sing 155 n n C3B C4B HEM sing 156 n n C3B CAB HEM sing 157 n n C4B NB HEM doub 158 n n CMB HMB HEM sing 159 n n CMB HMBA HEM sing 160 n n CMB HMBB HEM sing 161 n n CAB CBB HEM doub 162 n n CAB HAB HEM sing 163 n n CBB HBB HEM sing 164 n n CBB HBBA HEM sing 165 n n C1C C2C HEM sing 166 n y C1C NC HEM sing 167 n y C2C C3C HEM doub 168 n y C2C CMC HEM sing 169 n n C3C C4C HEM sing 170 n y C3C CAC HEM sing 171 n n C4C NC HEM sing 172 n y CMC HMC HEM sing 173 n n CMC HMCA HEM sing 174 n n CMC HMCB HEM sing 175 n n CAC CBC HEM doub 176 n n CAC HAC HEM sing 177 n n CBC HBC HEM sing 178 n n CBC HBCA HEM sing 179 n n C1D C2D HEM sing 180 n n C1D ND HEM doub 181 n n C2D C3D HEM doub 182 n n C2D CMD HEM sing 183 n n C3D C4D HEM sing 184 n n C3D CAD HEM sing 185 n n C4D ND HEM sing 186 n n CMD HMD HEM sing 187 n n CMD HMDA HEM sing 188 n n CMD HMDB HEM sing 189 n n CAD CBD HEM sing 190 n n CAD HAD HEM sing 191 n n CAD HADA HEM sing 192 n n CBD CGD HEM sing 193 n n CBD HBD HEM sing 194 n n CBD HBDA HEM sing 195 n n CGD O1D HEM doub 196 n n CGD O2D HEM sing 197 n n O2A H2A HEM sing 198 n n O2D H2D HEM sing 199 n n FE NA HEM sing 200 n n FE NB HEM sing 201 n n FE NC HEM sing 202 n n FE ND HEM sing 203 n n # _atom_sites.entry_id 4UZV _atom_sites.fract_transf_matrix[1][1] 0.01276 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011135 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 1157 1157 HEM HEM . C 3 ACT A 1 1160 1160 ACT ACT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 31.899 6.437 6.885 1 87.25 ? CHA HEM 1157 A 1 HETATM 2 C CHB HEM . . . B 2 29.866 9.495 10.035 1 86.59 ? CHB HEM 1157 A 1 HETATM 3 C CHC HEM . . . B 2 28.699 5.776 12.82 1 84.56 ? CHC HEM 1157 A 1 HETATM 4 C CHD HEM . . . B 2 29.668 2.756 9.131 1 84.77 ? CHD HEM 1157 A 1 HETATM 5 C C1A HEM . . . B 2 31.546 7.575 7.563 1 88.07 ? C1A HEM 1157 A 1 HETATM 6 C C2A HEM . . . B 2 32.02 8.905 7.246 1 89.77 ? C2A HEM 1157 A 1 HETATM 7 C C3A HEM . . . B 2 31.457 9.754 8.138 1 88.8 ? C3A HEM 1157 A 1 HETATM 8 C C4A HEM . . . B 2 30.616 8.978 9.014 1 87.33 ? C4A HEM 1157 A 1 HETATM 9 C CMA HEM . . . B 2 31.596 11.299 8.277 1 88.85 ? CMA HEM 1157 A 1 HETATM 10 C CAA HEM . . . B 2 32.999 9.21 6.076 1 90 ? CAA HEM 1157 A 1 HETATM 11 C CBA HEM . . . B 2 32.264 9.285 4.725 1 90 ? CBA HEM 1157 A 1 HETATM 12 C CGA HEM . . . B 2 32.641 8.175 3.764 1 90 ? CGA HEM 1157 A 1 HETATM 13 O O1A HEM . . . B 2 32.015 8.105 2.656 1 90 ? O1A HEM 1157 A 1 HETATM 14 O O2A HEM . . . B 2 33.562 7.364 4.099 1 90 ? O2A HEM 1157 A 1 HETATM 15 C C1B HEM . . . B 2 29.443 8.775 11.114 1 85.82 ? C1B HEM 1157 A 1 HETATM 16 C C2B HEM . . . B 2 29.025 9.308 12.393 1 85.3 ? C2B HEM 1157 A 1 HETATM 17 C C3B HEM . . . B 2 28.71 8.27 13.165 1 85.16 ? C3B HEM 1157 A 1 HETATM 18 C C4B HEM . . . B 2 28.915 7.059 12.396 1 84.81 ? C4B HEM 1157 A 1 HETATM 19 C CMB HEM . . . B 2 28.957 10.807 12.785 1 84.8 ? CMB HEM 1157 A 1 HETATM 20 C CAB HEM . . . B 2 28.202 8.364 14.62 1 86.11 ? CAB HEM 1157 A 1 HETATM 21 C CBB HEM . . . B 2 28.942 7.901 15.632 1 86.41 ? CBB HEM 1157 A 1 HETATM 22 C C1C HEM . . . B 2 28.815 4.644 12.041 1 84.9 ? C1C HEM 1157 A 1 HETATM 23 C C2C HEM . . . B 2 28.426 3.3 12.433 1 84.71 ? C2C HEM 1157 A 1 HETATM 24 C C3C HEM . . . B 2 28.702 2.478 11.413 1 84.92 ? C3C HEM 1157 A 1 HETATM 25 C C4C HEM . . . B 2 29.267 3.261 10.337 1 85.08 ? C4C HEM 1157 A 1 HETATM 26 C CMC HEM . . . B 2 27.811 2.892 13.789 1 84.01 ? CMC HEM 1157 A 1 HETATM 27 C CAC HEM . . . B 2 28.462 0.955 11.361 1 84.9 ? CAC HEM 1157 A 1 HETATM 28 C CBC HEM . . . B 2 27.236 0.492 11.098 1 85.73 ? CBC HEM 1157 A 1 HETATM 29 C C1D HEM . . . B 2 30.388 3.443 8.2 1 85.27 ? C1D HEM 1157 A 1 HETATM 30 C C2D HEM . . . B 2 30.946 2.87 7.003 1 86.09 ? C2D HEM 1157 A 1 HETATM 31 C C3D HEM . . . B 2 31.656 4.032 6.286 1 86.95 ? C3D HEM 1157 A 1 HETATM 32 C C4D HEM . . . B 2 31.436 5.176 7.139 1 86.61 ? C4D HEM 1157 A 1 HETATM 33 C CMD HEM . . . B 2 30.846 1.397 6.551 1 86 ? CMD HEM 1157 A 1 HETATM 34 C CAD HEM . . . B 2 32.434 4.012 4.939 1 88.06 ? CAD HEM 1157 A 1 HETATM 35 C CBD HEM . . . B 2 33.814 3.37 5.072 1 88.96 ? CBD HEM 1157 A 1 HETATM 36 C CGD HEM . . . B 2 34.386 3.07 3.709 1 89.61 ? CGD HEM 1157 A 1 HETATM 37 O O1D HEM . . . B 2 35.105 3.939 3.155 1 89.73 ? O1D HEM 1157 A 1 HETATM 38 O O2D HEM . . . B 2 34.129 1.96 3.179 1 89.58 ? O2D HEM 1157 A 1 HETATM 39 N NA HEM . . . B 2 30.692 7.653 8.644 1 86.84 ? NA HEM 1157 A 1 HETATM 40 N NB HEM . . . B 2 29.357 7.405 11.14 1 85.43 ? NB HEM 1157 A 1 HETATM 41 N NC HEM . . . B 2 29.318 4.583 10.748 1 85.32 ? NC HEM 1157 A 1 HETATM 42 N ND HEM . . . B 2 30.686 4.798 8.243 1 85.79 ? ND HEM 1157 A 1 HETATM 43 FE FE HEM . . . B 2 29.988 6.147 9.686 1 85.69 ? FE HEM 1157 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #