data_4V02 # _model_server_result.job_id BuWpj39y00qifVersPeXZg _model_server_result.datetime_utc '2024-11-04 22:41:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4v02 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":800}' # _entry.id 4V02 # _exptl.entry_id 4V02 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4V02 _cell.length_a 130.618 _cell.length_b 130.618 _cell.length_c 298.507 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4V02 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 17 A THR 17 1_555 E MG MG . A MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc2 E MG MG . A MG 700 1_555 F O1B ATP . A ATP 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc3 E MG MG . A MG 700 1_555 F O1G ATP . A ATP 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc4 B OG1 THR 17 B THR 17 1_555 G MG MG . B MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc5 G MG MG . B MG 700 1_555 H O1G ATP . B ATP 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? metalc ? metalc6 G MG MG . B MG 700 1_555 H O1B ATP . B ATP 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4V02 _atom_sites.fract_transf_matrix[1][1] 0.007656 _atom_sites.fract_transf_matrix[1][2] 0.00442 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00884 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 700 700 MG MG . F 4 ATP A 1 800 800 ATP ATP . G 3 MG B 1 700 700 MG MG . H 4 ATP B 1 800 800 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . F 4 -42.123 1.988 -41.104 1 24.89 ? PG ATP 800 A 1 HETATM 2 O O1G ATP . . . F 4 -43.41 1.58 -40.46 1 18.09 ? O1G ATP 800 A 1 HETATM 3 O O2G ATP . . . F 4 -41.945 1.343 -42.47 1 26.39 ? O2G ATP 800 A 1 HETATM 4 O O3G ATP . . . F 4 -41.952 3.494 -40.899 1 35.39 ? O3G ATP 800 A 1 HETATM 5 P PB ATP . . . F 4 -40.635 0.779 -38.815 1 30.13 ? PB ATP 800 A 1 HETATM 6 O O1B ATP . . . F 4 -41.861 -0.16 -38.679 1 37.74 ? O1B ATP 800 A 1 HETATM 7 O O2B ATP . . . F 4 -40.41 1.86 -37.846 1 26.89 ? O2B ATP 800 A 1 HETATM 8 O O3B ATP . . . F 4 -40.749 1.469 -40.335 1 33.83 ? O3B ATP 800 A 1 HETATM 9 P PA ATP . . . F 4 -39.219 -1.68 -39.146 1 24.03 ? PA ATP 800 A 1 HETATM 10 O O1A ATP . . . F 4 -40.058 -2.18 -40.287 1 33.32 ? O1A ATP 800 A 1 HETATM 11 O O2A ATP . . . F 4 -39.553 -2.261 -37.778 1 23.82 ? O2A ATP 800 A 1 HETATM 12 O O3A ATP . . . F 4 -39.242 -0.04 -39.046 1 28.34 ? O3A ATP 800 A 1 HETATM 13 O O5' ATP . . . F 4 -37.746 -1.98 -39.611 1 25.85 ? O5' ATP 800 A 1 HETATM 14 C C5' ATP . . . F 4 -37.361 -1.457 -40.849 1 25.7 ? C5' ATP 800 A 1 HETATM 15 C C4' ATP . . . F 4 -36.29 -2.325 -41.474 1 29.54 ? C4' ATP 800 A 1 HETATM 16 O O4' ATP . . . F 4 -35.078 -2.317 -40.71 1 33.89 ? O4' ATP 800 A 1 HETATM 17 C C3' ATP . . . F 4 -36.772 -3.752 -41.574 1 34.02 ? C3' ATP 800 A 1 HETATM 18 O O3' ATP . . . F 4 -36.214 -4.293 -42.764 1 36.74 ? O3' ATP 800 A 1 HETATM 19 C C2' ATP . . . F 4 -36.163 -4.41 -40.359 1 35.74 ? C2' ATP 800 A 1 HETATM 20 O O2' ATP . . . F 4 -35.918 -5.811 -40.496 1 42.58 ? O2' ATP 800 A 1 HETATM 21 C C1' ATP . . . F 4 -34.851 -3.651 -40.242 1 38.68 ? C1' ATP 800 A 1 HETATM 22 N N9 ATP . . . F 4 -34.387 -3.58 -38.851 1 36.37 ? N9 ATP 800 A 1 HETATM 23 C C8 ATP . . . F 4 -35.029 -2.942 -37.847 1 36.66 ? C8 ATP 800 A 1 HETATM 24 N N7 ATP . . . F 4 -34.323 -3.064 -36.709 1 36.06 ? N7 ATP 800 A 1 HETATM 25 C C5 ATP . . . F 4 -33.228 -3.786 -37.013 1 35.18 ? C5 ATP 800 A 1 HETATM 26 C C6 ATP . . . F 4 -32.074 -4.26 -36.255 1 28.96 ? C6 ATP 800 A 1 HETATM 27 N N6 ATP . . . F 4 -32.014 -3.959 -34.946 1 31.09 ? N6 ATP 800 A 1 HETATM 28 N N1 ATP . . . F 4 -31.148 -4.969 -36.901 1 30.67 ? N1 ATP 800 A 1 HETATM 29 C C2 ATP . . . F 4 -31.244 -5.255 -38.225 1 34.43 ? C2 ATP 800 A 1 HETATM 30 N N3 ATP . . . F 4 -32.276 -4.864 -38.999 1 38.49 ? N3 ATP 800 A 1 HETATM 31 C C4 ATP . . . F 4 -33.276 -4.14 -38.424 1 36.24 ? C4 ATP 800 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #