data_4V0G # _model_server_result.job_id IlVGfkK1FRg4KfcelC8MTA _model_server_result.datetime_utc '2024-11-22 22:55:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4v0g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2099}' # _entry.id 4V0G # _exptl.entry_id 4V0G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 521.616 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[3-(2-{3-amino-6-[1-(1-methylpiperidin-4-yl)-1H-pyrazol-4-yl]pyrazin-2-yl}-1H-benzimidazol-1-yl)phenyl]propanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4V0G _cell.length_a 57.14 _cell.length_b 99.032 _cell.length_c 111.373 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4V0G _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 94 A CYS 909 1_555 C C20 G9B . A G9B 2099 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.74 ? covale ? covale2 A C ASP 164 A ASP 979 1_555 A N PTR 165 A PTR 980 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C PTR 165 A PTR 980 1_555 A N PTR 166 A PTR 981 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C PTR 166 A PTR 981 1_555 A N VAL 167 A VAL 982 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 B SG CYS 94 B CYS 909 1_555 D C20 G9B . B G9B 2099 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? covale ? covale6 B C ASP 164 B ASP 979 1_555 B N PTR 165 B PTR 980 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 B C PTR 165 B PTR 980 1_555 B N PTR 166 B PTR 981 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C PTR 166 B PTR 981 1_555 B N VAL 167 B VAL 982 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C29 H31 N9 O' _chem_comp.formula_weight 521.616 _chem_comp.id G9B _chem_comp.mon_nstd_flag . _chem_comp.name N-[3-(2-{3-amino-6-[1-(1-methylpiperidin-4-yl)-1H-pyrazol-4-yl]pyrazin-2-yl}-1H-benzimidazol-1-yl)phenyl]propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 G9B doub 83 n y C1 C3 G9B sing 84 n y C1 N7 G9B sing 85 n y C2 C4 G9B sing 86 n y C2 N9 G9B sing 87 n y C3 C5 G9B doub 88 n y C4 C6 G9B doub 89 n y C5 C6 G9B sing 90 n y N7 C8 G9B sing 91 n y N7 C10 G9B sing 92 n n C8 N9 G9B doub 93 n y C8 C21 G9B sing 94 n n C10 C11 G9B doub 95 n y C10 C12 G9B sing 96 n y C11 C13 G9B sing 97 n y C12 C14 G9B doub 98 n y C13 C15 G9B doub 99 n y C13 N16 G9B sing 100 n n C14 C15 G9B sing 101 n y N16 C17 G9B sing 102 n n C17 C18 G9B sing 103 n n C17 O19 G9B doub 104 n n C18 C20 G9B sing 105 n n C21 N22 G9B doub 106 n y C21 C23 G9B sing 107 n y N22 C24 G9B sing 108 n y C23 N25 G9B doub 109 n y C23 N27 G9B sing 110 n n C24 C26 G9B doub 111 n y C24 C28 G9B sing 112 n n N25 C26 G9B sing 113 n y C28 C29 G9B doub 114 n y C28 C30 G9B sing 115 n y C29 N31 G9B sing 116 n y C30 N32 G9B doub 117 n y N31 N32 G9B sing 118 n y N31 C33 G9B sing 119 n n C33 C34 G9B sing 120 n n C33 C35 G9B sing 121 n n C34 C36 G9B sing 122 n n C35 C37 G9B sing 123 n n C36 N38 G9B sing 124 n n C37 N38 G9B sing 125 n n N38 C39 G9B sing 126 n n C3 H3 G9B sing 127 n n C4 H4 G9B sing 128 n n C5 H5 G9B sing 129 n n C6 H6 G9B sing 130 n n C11 H11 G9B sing 131 n n C12 H12 G9B sing 132 n n C14 H14 G9B sing 133 n n C15 H15 G9B sing 134 n n N16 HN16 G9B sing 135 n n C18 H18 G9B sing 136 n n C18 H18A G9B sing 137 n n C20 H20 G9B sing 138 n n C20 H20A G9B sing 139 n n C20 H20B G9B sing 140 n n C26 H26 G9B sing 141 n n N27 HN27 G9B sing 142 n n N27 HN2A G9B sing 143 n n C29 H29 G9B sing 144 n n C30 H30 G9B sing 145 n n C33 H33 G9B sing 146 n n C34 H34 G9B sing 147 n n C34 H34A G9B sing 148 n n C35 H35 G9B sing 149 n n C35 H35A G9B sing 150 n n C36 H36 G9B sing 151 n n C36 H36A G9B sing 152 n n C37 H37 G9B sing 153 n n C37 H37A G9B sing 154 n n C39 H39 G9B sing 155 n n C39 H39A G9B sing 156 n n C39 H39B G9B sing 157 n n # _atom_sites.entry_id 4V0G _atom_sites.fract_transf_matrix[1][1] 0.017501 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 G9B A 1 2099 2099 G9B G9B . D 3 G9B B 1 2099 2099 G9B G9B . E 4 HOH A 1 2001 2001 HOH HOH . E 4 HOH A 2 2002 2002 HOH HOH . E 4 HOH A 3 2003 2003 HOH HOH . E 4 HOH A 4 2004 2004 HOH HOH . E 4 HOH A 5 2005 2005 HOH HOH . E 4 HOH A 6 2006 2006 HOH HOH . F 4 HOH B 1 2001 2001 HOH HOH . F 4 HOH B 2 2002 2002 HOH HOH . F 4 HOH B 3 2003 2003 HOH HOH . F 4 HOH B 4 2004 2004 HOH HOH . F 4 HOH B 5 2005 2005 HOH HOH . F 4 HOH B 6 2006 2006 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G9B . . . C 3 21.54 8.923 26.195 1 33.7 ? C1 G9B 2099 A 1 HETATM 2 C C2 G9B . . . C 3 21.727 7.574 26.072 1 33.86 ? C2 G9B 2099 A 1 HETATM 3 C C3 G9B . . . C 3 20.684 9.6 25.333 1 32.17 ? C3 G9B 2099 A 1 HETATM 4 C C4 G9B . . . C 3 21.076 6.844 25.088 1 31.73 ? C4 G9B 2099 A 1 HETATM 5 C C5 G9B . . . C 3 20.016 8.876 24.345 1 32.23 ? C5 G9B 2099 A 1 HETATM 6 C C6 G9B . . . C 3 20.214 7.503 24.22 1 31.78 ? C6 G9B 2099 A 1 HETATM 7 N N7 G9B . . . C 3 22.291 9.358 27.217 1 32.96 ? N7 G9B 2099 A 1 HETATM 8 C C8 G9B . . . C 3 22.935 8.267 27.717 1 31.49 ? C8 G9B 2099 A 1 HETATM 9 N N9 G9B . . . C 3 22.591 7.165 27.008 1 34.03 ? N9 G9B 2099 A 1 HETATM 10 C C10 G9B . . . C 3 22.347 10.778 27.657 1 33.35 ? C10 G9B 2099 A 1 HETATM 11 C C11 G9B . . . C 3 22.915 11.763 26.84 1 35.52 ? C11 G9B 2099 A 1 HETATM 12 C C12 G9B . . . C 3 21.82 11.148 28.882 1 33.55 ? C12 G9B 2099 A 1 HETATM 13 C C13 G9B . . . C 3 22.977 13.102 27.238 1 33.65 ? C13 G9B 2099 A 1 HETATM 14 C C14 G9B . . . C 3 21.866 12.473 29.279 1 32.11 ? C14 G9B 2099 A 1 HETATM 15 C C15 G9B . . . C 3 22.434 13.442 28.47 1 32.92 ? C15 G9B 2099 A 1 HETATM 16 N N16 G9B . . . C 3 23.571 14.081 26.374 1 34.17 ? N16 G9B 2099 A 1 HETATM 17 C C17 G9B . . . C 3 23.831 15.439 26.562 1 36.37 ? C17 G9B 2099 A 1 HETATM 18 C C18 G9B . . . C 3 24.469 16.232 25.419 1 34.16 ? C18 G9B 2099 A 1 HETATM 19 O O19 G9B . . . C 3 23.516 16.016 27.578 1 42.45 ? O19 G9B 2099 A 1 HETATM 20 C C20 G9B . . . C 3 25.901 16.728 25.594 1 33.27 ? C20 G9B 2099 A 1 HETATM 21 C C21 G9B . . . C 3 23.911 8.191 28.85 1 30.67 ? C21 G9B 2099 A 1 HETATM 22 N N22 G9B . . . C 3 24.254 9.382 29.495 1 31.91 ? N22 G9B 2099 A 1 HETATM 23 C C23 G9B . . . C 3 24.503 7.004 29.267 1 29.56 ? C23 G9B 2099 A 1 HETATM 24 C C24 G9B . . . C 3 25.161 9.413 30.546 1 30.88 ? C24 G9B 2099 A 1 HETATM 25 N N25 G9B . . . C 3 25.403 7.032 30.319 1 31 ? N25 G9B 2099 A 1 HETATM 26 C C26 G9B . . . C 3 25.728 8.22 30.955 1 31.14 ? C26 G9B 2099 A 1 HETATM 27 N N27 G9B . . . C 3 24.214 5.765 28.659 1 29.19 ? N27 G9B 2099 A 1 HETATM 28 C C28 G9B . . . C 3 25.5 10.688 31.244 1 30.77 ? C28 G9B 2099 A 1 HETATM 29 C C29 G9B . . . C 3 26.433 10.92 32.229 1 35.77 ? C29 G9B 2099 A 1 HETATM 30 C C30 G9B . . . C 3 24.913 11.909 31.056 1 34.51 ? C30 G9B 2099 A 1 HETATM 31 N N31 G9B . . . C 3 26.37 12.222 32.565 1 36.31 ? N31 G9B 2099 A 1 HETATM 32 N N32 G9B . . . C 3 25.489 12.809 31.883 1 37.46 ? N32 G9B 2099 A 1 HETATM 33 C C33 G9B . . . C 3 27.216 12.877 33.586 1 34.91 ? C33 G9B 2099 A 1 HETATM 34 C C34 G9B . . . C 3 27.536 14.361 33.194 0 38.34 ? C34 G9B 2099 A 1 HETATM 35 C C35 G9B . . . C 3 26.594 12.892 34.93 0 38.32 ? C35 G9B 2099 A 1 HETATM 36 C C36 G9B . . . C 3 28.479 14.969 34.244 0 38.3 ? C36 G9B 2099 A 1 HETATM 37 C C37 G9B . . . C 3 27.541 13.514 35.96 0 38.29 ? C37 G9B 2099 A 1 HETATM 38 N N38 G9B . . . C 3 27.894 14.9 35.598 0 38.25 ? N38 G9B 2099 A 1 HETATM 39 C C39 G9B . . . C 3 28.812 15.485 36.595 0 38.21 ? C39 G9B 2099 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 39 #