data_4V0G
#
_model_server_result.job_id            TPdTZ6V9Q17DvAystbq-QQ 
_model_server_result.datetime_utc      '2024-11-26 12:05:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4v0g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2099}' 
#
_entry.id    4V0G 
#
_exptl.entry_id    4V0G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              521.616 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[3-(2-{3-amino-6-[1-(1-methylpiperidin-4-yl)-1H-pyrazol-4-yl]pyrazin-2-yl}-1H-benzimidazol-1-yl)phenyl]propanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4V0G 
_cell.length_a            57.14 
_cell.length_b            99.032 
_cell.length_c            111.373 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4V0G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 94 A CYS 909 1_555 C C20 G9B . A G9B 2099 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.74 ? 
covale ? covale2 A C ASP 164 A ASP 979 1_555 A N PTR 165 A PTR 980 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 A C PTR 165 A PTR 980 1_555 A N PTR 166 A PTR 981 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 A C PTR 166 A PTR 981 1_555 A N VAL 167 A VAL 982 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale5 B SG CYS 94 B CYS 909 1_555 D C20 G9B . B G9B 2099 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? 
covale ? covale6 B C ASP 164 B ASP 979 1_555 B N PTR 165 B PTR 980 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 B C PTR 165 B PTR 980 1_555 B N PTR 166 B PTR 981 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale8 B C PTR 166 B PTR 981 1_555 B N VAL 167 B VAL 982 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C29 H31 N9 O' 
_chem_comp.formula_weight    521.616 
_chem_comp.id                G9B 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[3-(2-{3-amino-6-[1-(1-methylpiperidin-4-yl)-1H-pyrazol-4-yl]pyrazin-2-yl}-1H-benzimidazol-1-yl)phenyl]propanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 G9B doub 83 n y 
C1 C3 G9B sing 84 n y 
C1 N7 G9B sing 85 n y 
C2 C4 G9B sing 86 n y 
C2 N9 G9B sing 87 n y 
C3 C5 G9B doub 88 n y 
C4 C6 G9B doub 89 n y 
C5 C6 G9B sing 90 n y 
N7 C8 G9B sing 91 n y 
N7 C10 G9B sing 92 n n 
C8 N9 G9B doub 93 n y 
C8 C21 G9B sing 94 n n 
C10 C11 G9B doub 95 n y 
C10 C12 G9B sing 96 n y 
C11 C13 G9B sing 97 n y 
C12 C14 G9B doub 98 n y 
C13 C15 G9B doub 99 n y 
C13 N16 G9B sing 100 n n 
C14 C15 G9B sing 101 n y 
N16 C17 G9B sing 102 n n 
C17 C18 G9B sing 103 n n 
C17 O19 G9B doub 104 n n 
C18 C20 G9B sing 105 n n 
C21 N22 G9B doub 106 n y 
C21 C23 G9B sing 107 n y 
N22 C24 G9B sing 108 n y 
C23 N25 G9B doub 109 n y 
C23 N27 G9B sing 110 n n 
C24 C26 G9B doub 111 n y 
C24 C28 G9B sing 112 n n 
N25 C26 G9B sing 113 n y 
C28 C29 G9B doub 114 n y 
C28 C30 G9B sing 115 n y 
C29 N31 G9B sing 116 n y 
C30 N32 G9B doub 117 n y 
N31 N32 G9B sing 118 n y 
N31 C33 G9B sing 119 n n 
C33 C34 G9B sing 120 n n 
C33 C35 G9B sing 121 n n 
C34 C36 G9B sing 122 n n 
C35 C37 G9B sing 123 n n 
C36 N38 G9B sing 124 n n 
C37 N38 G9B sing 125 n n 
N38 C39 G9B sing 126 n n 
C3 H3 G9B sing 127 n n 
C4 H4 G9B sing 128 n n 
C5 H5 G9B sing 129 n n 
C6 H6 G9B sing 130 n n 
C11 H11 G9B sing 131 n n 
C12 H12 G9B sing 132 n n 
C14 H14 G9B sing 133 n n 
C15 H15 G9B sing 134 n n 
N16 HN16 G9B sing 135 n n 
C18 H18 G9B sing 136 n n 
C18 H18A G9B sing 137 n n 
C20 H20 G9B sing 138 n n 
C20 H20A G9B sing 139 n n 
C20 H20B G9B sing 140 n n 
C26 H26 G9B sing 141 n n 
N27 HN27 G9B sing 142 n n 
N27 HN2A G9B sing 143 n n 
C29 H29 G9B sing 144 n n 
C30 H30 G9B sing 145 n n 
C33 H33 G9B sing 146 n n 
C34 H34 G9B sing 147 n n 
C34 H34A G9B sing 148 n n 
C35 H35 G9B sing 149 n n 
C35 H35A G9B sing 150 n n 
C36 H36 G9B sing 151 n n 
C36 H36A G9B sing 152 n n 
C37 H37 G9B sing 153 n n 
C37 H37A G9B sing 154 n n 
C39 H39 G9B sing 155 n n 
C39 H39A G9B sing 156 n n 
C39 H39B G9B sing 157 n n 
#
_atom_sites.entry_id                     4V0G 
_atom_sites.fract_transf_matrix[1][1]    0.017501 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010098 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008979 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 G9B A 1 2099 2099 G9B G9B . 
D 3 G9B B 1 2099 2099 G9B G9B . 
E 4 HOH A 1 2001 2001 HOH HOH . 
E 4 HOH A 2 2002 2002 HOH HOH . 
E 4 HOH A 3 2003 2003 HOH HOH . 
E 4 HOH A 4 2004 2004 HOH HOH . 
E 4 HOH A 5 2005 2005 HOH HOH . 
E 4 HOH A 6 2006 2006 HOH HOH . 
F 4 HOH B 1 2001 2001 HOH HOH . 
F 4 HOH B 2 2002 2002 HOH HOH . 
F 4 HOH B 3 2003 2003 HOH HOH . 
F 4 HOH B 4 2004 2004 HOH HOH . 
F 4 HOH B 5 2005 2005 HOH HOH . 
F 4 HOH B 6 2006 2006 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 G9B . . . D 3 -7.042 -8.746 -5.583 1 30.24 ? C1 G9B 2099 B 1 
HETATM 2 C C2 G9B . . . D 3 -6.739 -7.428 -5.415 1 30.51 ? C2 G9B 2099 B 1 
HETATM 3 C C3 G9B . . . D 3 -7.972 -9.389 -4.784 1 28.62 ? C3 G9B 2099 B 1 
HETATM 4 C C4 G9B . . . D 3 -7.354 -6.682 -4.431 1 28.55 ? C4 G9B 2099 B 1 
HETATM 5 C C5 G9B . . . D 3 -8.601 -8.649 -3.794 1 29.31 ? C5 G9B 2099 B 1 
HETATM 6 C C6 G9B . . . D 3 -8.291 -7.303 -3.618 1 30.04 ? C6 G9B 2099 B 1 
HETATM 7 N N7 G9B . . . D 3 -6.308 -9.2 -6.595 1 29.45 ? N7 G9B 2099 B 1 
HETATM 8 C C8 G9B . . . D 3 -5.538 -8.171 -7.04 1 29.26 ? C8 G9B 2099 B 1 
HETATM 9 N N9 G9B . . . D 3 -5.812 -7.064 -6.312 1 31.63 ? N9 G9B 2099 B 1 
HETATM 10 C C10 G9B . . . D 3 -6.374 -10.596 -7.052 1 29.13 ? C10 G9B 2099 B 1 
HETATM 11 C C11 G9B . . . D 3 -5.673 -11.565 -6.346 1 29.56 ? C11 G9B 2099 B 1 
HETATM 12 C C12 G9B . . . D 3 -7.132 -10.951 -8.151 1 29.65 ? C12 G9B 2099 B 1 
HETATM 13 C C13 G9B . . . D 3 -5.711 -12.893 -6.742 1 27.23 ? C13 G9B 2099 B 1 
HETATM 14 C C14 G9B . . . D 3 -7.176 -12.278 -8.55 1 29.7 ? C14 G9B 2099 B 1 
HETATM 15 C C15 G9B . . . D 3 -6.47 -13.246 -7.851 1 28.6 ? C15 G9B 2099 B 1 
HETATM 16 N N16 G9B . . . D 3 -4.977 -13.839 -5.988 1 29.15 ? N16 G9B 2099 B 1 
HETATM 17 C C17 G9B . . . D 3 -4.866 -15.206 -6.143 1 29.46 ? C17 G9B 2099 B 1 
HETATM 18 C C18 G9B . . . D 3 -3.995 -15.964 -5.164 1 26.43 ? C18 G9B 2099 B 1 
HETATM 19 O O19 G9B . . . D 3 -5.416 -15.806 -7.033 1 33.25 ? O19 G9B 2099 B 1 
HETATM 20 C C20 G9B . . . D 3 -2.697 -16.345 -5.852 1 26.79 ? C20 G9B 2099 B 1 
HETATM 21 C C21 G9B . . . D 3 -4.542 -8.166 -8.166 1 28.05 ? C21 G9B 2099 B 1 
HETATM 22 N N22 G9B . . . D 3 -4.283 -9.373 -8.825 1 25.98 ? N22 G9B 2099 B 1 
HETATM 23 C C23 G9B . . . D 3 -3.881 -7.015 -8.578 1 24.43 ? C23 G9B 2099 B 1 
HETATM 24 C C24 G9B . . . D 3 -3.381 -9.449 -9.88 1 27.23 ? C24 G9B 2099 B 1 
HETATM 25 N N25 G9B . . . D 3 -2.983 -7.077 -9.63 1 26.81 ? N25 G9B 2099 B 1 
HETATM 26 C C26 G9B . . . D 3 -2.735 -8.284 -10.278 1 28.72 ? C26 G9B 2099 B 1 
HETATM 27 N N27 G9B . . . D 3 -4.104 -5.783 -7.946 1 25.18 ? N27 G9B 2099 B 1 
HETATM 28 C C28 G9B . . . D 3 -3.123 -10.748 -10.578 1 26.66 ? C28 G9B 2099 B 1 
HETATM 29 C C29 G9B . . . D 3 -2.202 -11.05 -11.557 1 29.55 ? C29 G9B 2099 B 1 
HETATM 30 C C30 G9B . . . D 3 -3.784 -11.931 -10.37 1 29.85 ? C30 G9B 2099 B 1 
HETATM 31 N N31 G9B . . . D 3 -2.346 -12.354 -11.874 1 31.9 ? N31 G9B 2099 B 1 
HETATM 32 N N32 G9B . . . D 3 -3.263 -12.874 -11.186 1 32.27 ? N32 G9B 2099 B 1 
HETATM 33 C C33 G9B . . . D 3 -1.553 -13.084 -12.89 1 30.22 ? C33 G9B 2099 B 1 
HETATM 34 C C34 G9B . . . D 3 -1.617 -14.646 -12.653 0 34.08 ? C34 G9B 2099 B 1 
HETATM 35 C C35 G9B . . . D 3 -2.045 -12.837 -14.284 0 34.05 ? C35 G9B 2099 B 1 
HETATM 36 C C36 G9B . . . D 3 -0.769 -15.366 -13.713 0 34.02 ? C36 G9B 2099 B 1 
HETATM 37 C C37 G9B . . . D 3 -1.211 -13.595 -15.321 0 34 ? C37 G9B 2099 B 1 
HETATM 38 N N38 G9B . . . D 3 -1.237 -15.048 -15.076 0 33.93 ? N38 G9B 2099 B 1 
HETATM 39 C C39 G9B . . . D 3 -0.437 -15.766 -16.087 0 33.87 ? C39 G9B 2099 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           39 
#