data_4V0M # _model_server_result.job_id H9Sb29qogSQDzGqZAqVtcg _model_server_result.datetime_utc '2024-11-15 03:53:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4v0m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":600}' # _entry.id 4V0M # _exptl.entry_id 4V0M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4V0M _cell.length_a 124.785 _cell.length_b 124.785 _cell.length_c 441.84 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4V0M _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 PQS dimeric 2 author_and_software_defined_assembly 3 PQS dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression E,F,M,N 1 1 A,B,I,J 2 1 C,D,K,L 3 1 G,H,O,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 K N N ? 4 M N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 343 B CYS 343 1_555 D SG CYS 343 D CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 F SG CYS 343 F CYS 343 1_555 H SG CYS 343 H CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc1 A OG1 THR 20 A THR 31 1_555 J MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc2 A OG1 THR 39 A THR 50 1_555 J MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc3 I O1G GTP . A GTP 600 1_555 J MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc4 I O2B GTP . A GTP 600 1_555 J MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc5 C OG1 THR 20 C THR 31 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc6 C OG1 THR 39 C THR 50 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc7 K O1G GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc8 K O2B GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc9 E OG1 THR 20 E THR 31 1_555 N MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc10 E OG1 THR 39 E THR 50 1_555 N MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc11 M O2B GTP . E GTP 600 1_555 N MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc12 M O1G GTP . E GTP 600 1_555 N MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc13 G OG1 THR 20 G THR 31 1_555 P MG MG . G MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc14 G OG1 THR 39 G THR 50 1_555 P MG MG . G MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc15 O O2B GTP . G GTP 600 1_555 P MG MG . G MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc16 O O1G GTP . G GTP 600 1_555 P MG MG . G MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 4V0M _atom_sites.fract_transf_matrix[1][1] 0.008014 _atom_sites.fract_transf_matrix[1][2] 0.004627 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009254 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002263 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 GTP A 1 600 600 GTP GTP . J 5 MG A 1 601 601 MG MG . K 4 GTP C 1 600 600 GTP GTP . L 5 MG C 1 601 601 MG MG . M 4 GTP E 1 600 600 GTP GTP . N 5 MG E 1 601 601 MG MG . O 4 GTP G 1 600 600 GTP GTP . P 5 MG G 1 601 601 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . I 4 19.117 11.569 45.809 1 73.14 ? PG GTP 600 A 1 HETATM 2 O O1G GTP . . . I 4 17.647 11.87 45.971 1 75.06 ? O1G GTP 600 A 1 HETATM 3 O O2G GTP . . . I 4 19.324 10.76 44.553 1 70.83 ? O2G GTP 600 A 1 HETATM 4 O O3G GTP . . . I 4 19.617 10.732 46.967 1 62.8 ? O3G GTP 600 A 1 HETATM 5 O O3B GTP . . . I 4 19.893 12.992 45.709 1 64.59 ? O3B GTP 600 A 1 HETATM 6 P PB GTP . . . I 4 19.177 14.284 45.037 1 72.34 ? PB GTP 600 A 1 HETATM 7 O O1B GTP . . . I 4 20.229 15.23 44.504 1 66.11 ? O1B GTP 600 A 1 HETATM 8 O O2B GTP . . . I 4 18.235 13.841 43.941 1 68.66 ? O2B GTP 600 A 1 HETATM 9 O O3A GTP . . . I 4 18.336 15.085 46.16 1 84.9 ? O3A GTP 600 A 1 HETATM 10 P PA GTP . . . I 4 17.296 16.2 45.63 1 86.94 ? PA GTP 600 A 1 HETATM 11 O O1A GTP . . . I 4 17.895 16.807 44.391 1 70.75 ? O1A GTP 600 A 1 HETATM 12 O O2A GTP . . . I 4 15.985 15.515 45.325 1 82.4 ? O2A GTP 600 A 1 HETATM 13 O O5' GTP . . . I 4 17.067 17.342 46.748 1 68.85 ? O5' GTP 600 A 1 HETATM 14 C C5' GTP . . . I 4 18.124 18.176 47.138 1 72.31 ? C5' GTP 600 A 1 HETATM 15 C C4' GTP . . . I 4 18.005 18.434 48.627 1 73.57 ? C4' GTP 600 A 1 HETATM 16 O O4' GTP . . . I 4 18.619 19.67 48.914 1 74.99 ? O4' GTP 600 A 1 HETATM 17 C C3' GTP . . . I 4 16.549 18.542 49.012 1 80.54 ? C3' GTP 600 A 1 HETATM 18 O O3' GTP . . . I 4 16.296 17.602 50.04 1 88.5 ? O3' GTP 600 A 1 HETATM 19 C C2' GTP . . . I 4 16.35 19.98 49.466 1 78.14 ? C2' GTP 600 A 1 HETATM 20 O O2' GTP . . . I 4 16 20.031 50.83 1 83.5 ? O2' GTP 600 A 1 HETATM 21 C C1' GTP . . . I 4 17.693 20.655 49.294 1 68.57 ? C1' GTP 600 A 1 HETATM 22 N N9 GTP . . . I 4 17.718 21.577 48.163 1 67.91 ? N9 GTP 600 A 1 HETATM 23 C C8 GTP . . . I 4 17.347 21.316 46.872 1 70.54 ? C8 GTP 600 A 1 HETATM 24 N N7 GTP . . . I 4 17.566 22.425 46.129 1 69.89 ? N7 GTP 600 A 1 HETATM 25 C C5 GTP . . . I 4 18.081 23.384 46.928 1 69.44 ? C5 GTP 600 A 1 HETATM 26 C C6 GTP . . . I 4 18.472 24.695 46.691 1 69.99 ? C6 GTP 600 A 1 HETATM 27 O O6 GTP . . . I 4 18.389 25.179 45.567 1 67.7 ? O6 GTP 600 A 1 HETATM 28 N N1 GTP . . . I 4 18.971 25.451 47.728 1 73.87 ? N1 GTP 600 A 1 HETATM 29 C C2 GTP . . . I 4 19.067 24.893 48.995 1 78.76 ? C2 GTP 600 A 1 HETATM 30 N N2 GTP . . . I 4 19.545 25.61 50.015 1 82.1 ? N2 GTP 600 A 1 HETATM 31 N N3 GTP . . . I 4 18.675 23.586 49.223 1 71.1 ? N3 GTP 600 A 1 HETATM 32 C C4 GTP . . . I 4 18.188 22.851 48.205 1 69.22 ? C4 GTP 600 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #