data_4V0O
#
_model_server_result.job_id            An3hXArXcwNVx9EYbI_vdg 
_model_server_result.datetime_utc      '2024-11-27 05:07:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4v0o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"FA","auth_seq_id":1427}' 
#
_entry.id    4V0O 
#
_exptl.entry_id    4V0O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              207.2 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'LEAD (II) ION' 
_entity.pdbx_number_of_molecules    18 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4V0O 
_cell.length_a            123.698 
_cell.length_b            123.698 
_cell.length_c            439.022 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4V0O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
PQS dimeric 2 author_and_software_defined_assembly 3 
PQS dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
E,F,V,W,X,Y,Z,AA 1 1 
A,B,I,J,K,L,M,N,O,P 2 1 
C,D,Q,R,S,T,U 3 1 
G,H,BA,CA,DA,EA,FA,GA,HA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
? 5 S N N 
? 5 T N N 
? 5 U N N 
? 5 X N N 
? 5 Y N N 
? 5 Z N N 
? 5 AA N N 
? 5 DA N N 
? 5 EA N N 
? 5 FA N N 
? 5 GA N N 
? 5 HA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 343 B CYS 343 1_555 D SG CYS 343 D CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
disulf ? disulf2 F SG CYS 343 F CYS 343 1_555 H SG CYS 343 H CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc1 A OG1 THR 20 A THR 31 1_555 J MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? 
metalc ? metalc2 A OG1 THR 39 A THR 50 1_555 J MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc3 A OE2 GLU 46 A GLU 57 1_555 L PB PB . A PB 1182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.085 ? 
metalc ? metalc4 A OD2 ASP 162 A ASP 173 1_555 K PB PB . A PB 1181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.114 ? 
metalc ? metalc5 I O1G GTP . A GTP 600 1_555 J MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc6 I O2B GTP . A GTP 600 1_555 J MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? 
metalc ? metalc7 B SG CYS 57 B CYS 57 1_555 M PB PB . B PB 1426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? 
metalc ? metalc8 B O ALA 74 B ALA 74 1_555 M PB PB . B PB 1426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc9 B O ILE 101 B ILE 101 1_555 N PB PB . B PB 1427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.129 ? 
metalc ? metalc10 B SG CYS 102 B CYS 102 1_555 N PB PB . B PB 1427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.234 ? 
metalc ? metalc11 B SG CYS 321 B CYS 321 1_555 O PB PB . B PB 1428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc12 B O VAL 325 B VAL 325 1_555 O PB PB . B PB 1428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.216 ? 
metalc ? metalc13 B NE2 HIS 327 B HIS 327 1_555 O PB PB . B PB 1428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? 
metalc ? metalc14 C OG1 THR 20 C THR 31 1_555 R MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc15 C OG1 THR 39 C THR 50 1_555 R MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc16 Q O1G GTP . C GTP 600 1_555 R MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc17 Q O2B GTP . C GTP 600 1_555 R MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc18 D SG CYS 57 D CYS 57 1_555 T PB PB . D PB 1427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? 
metalc ? metalc19 D O ALA 74 D ALA 74 1_555 T PB PB . D PB 1427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc20 D O PRO 98 D PRO 98 1_555 T PB PB . D PB 1427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.289 ? 
metalc ? metalc21 D O ILE 101 D ILE 101 1_555 U PB PB . D PB 1428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.292 ? 
metalc ? metalc22 D SG CYS 321 D CYS 321 1_555 S PB PB . D PB 1426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? 
metalc ? metalc23 D O VAL 325 D VAL 325 1_555 S PB PB . D PB 1426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? 
metalc ? metalc24 E OG1 THR 20 E THR 31 1_555 W MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc25 E OG1 THR 39 E THR 50 1_555 W MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc26 E OD1 ASP 58 E ASP 69 1_555 W MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? 
metalc ? metalc27 E OD2 ASP 162 E ASP 173 1_555 X PB PB . E PB 1181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? 
metalc ? metalc28 E OD1 ASP 162 E ASP 173 1_555 X PB PB . E PB 1181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.055 ? 
metalc ? metalc29 V O1G GTP . E GTP 600 1_555 W MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
metalc ? metalc30 V O2B GTP . E GTP 600 1_555 W MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? 
metalc ? metalc31 F SG CYS 57 F CYS 57 1_555 Y PB PB . F PB 1426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc32 F O ALA 74 F ALA 74 1_555 Y PB PB . F PB 1426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? 
metalc ? metalc33 F O ILE 101 F ILE 101 1_555 AA PB PB . F PB 1428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? 
metalc ? metalc34 F SG CYS 102 F CYS 102 1_555 AA PB PB . F PB 1428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.057 ? 
metalc ? metalc35 F SG CYS 321 F CYS 321 1_555 Z PB PB . F PB 1427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc36 F O VAL 325 F VAL 325 1_555 Z PB PB . F PB 1427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? 
metalc ? metalc37 G OG1 THR 20 G THR 31 1_555 CA MG MG . G MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
metalc ? metalc38 G OG1 THR 39 G THR 50 1_555 CA MG MG . G MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? 
metalc ? metalc39 G OD2 ASP 162 G ASP 173 1_555 DA PB PB . G PB 1181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? 
metalc ? metalc40 BA O2B GTP . G GTP 600 1_555 CA MG MG . G MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc41 BA O1G GTP . G GTP 600 1_555 CA MG MG . G MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? 
metalc ? metalc42 H SG CYS 57 H CYS 57 1_555 EA PB PB . H PB 1426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.06 ? 
metalc ? metalc43 H O ALA 74 H ALA 74 1_555 EA PB PB . H PB 1426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? 
metalc ? metalc44 H O ILE 101 H ILE 101 1_555 GA PB PB . H PB 1428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.206 ? 
metalc ? metalc45 H OG SER 103 H SER 103 1_555 HA PB PB . H PB 1429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.174 ? 
metalc ? metalc46 H SG CYS 321 H CYS 321 1_555 FA PB PB . H PB 1427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc47 H O VAL 325 H VAL 325 1_555 FA PB PB . H PB 1427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.206 ? 
metalc ? metalc48 H NE2 HIS 327 H HIS 327 1_555 FA PB PB . H PB 1427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.027 ? 
#
_chem_comp.formula           'Pb 2' 
_chem_comp.formula_weight    207.2 
_chem_comp.id                PB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'LEAD (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4V0O 
_atom_sites.fract_transf_matrix[1][1]    0.008084 
_atom_sites.fract_transf_matrix[1][2]    0.004667 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009335 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002278 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 GTP A 1 600 600 GTP GTP . 
J 4 MG A 1 601 601 MG MG . 
K 5 PB A 1 1181 1181 PB PB . 
L 5 PB A 1 1182 1182 PB PB . 
M 5 PB B 1 1426 1426 PB PB . 
N 5 PB B 1 1427 1427 PB PB . 
O 5 PB B 1 1428 1428 PB PB . 
P 5 PB B 1 1429 1429 PB PB . 
Q 3 GTP C 1 600 600 GTP GTP . 
R 4 MG C 1 601 601 MG MG . 
S 5 PB D 1 1426 1426 PB PB . 
T 5 PB D 1 1427 1427 PB PB . 
U 5 PB D 1 1428 1428 PB PB . 
V 3 GTP E 1 600 600 GTP GTP . 
W 4 MG E 1 601 601 MG MG . 
X 5 PB E 1 1181 1181 PB PB . 
Y 5 PB F 1 1426 1426 PB PB . 
Z 5 PB F 1 1427 1427 PB PB . 
AA 5 PB F 1 1428 1428 PB PB . 
BA 3 GTP G 1 600 600 GTP GTP . 
CA 4 MG G 1 601 601 MG MG . 
DA 5 PB G 1 1181 1181 PB PB . 
EA 5 PB H 1 1426 1426 PB PB . 
FA 5 PB H 1 1427 1427 PB PB . 
GA 5 PB H 1 1428 1428 PB PB . 
HA 5 PB H 1 1429 1429 PB PB . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           PB 
_atom_site.label_atom_id         PB 
_atom_site.label_comp_id         PB 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         FA 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               31.418 
_atom_site.Cartn_y               -56.776 
_atom_site.Cartn_z               -60.293 
_atom_site.occupancy             0.14 
_atom_site.B_iso_or_equiv        16 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          PB 
_atom_site.auth_comp_id          PB 
_atom_site.auth_seq_id           1427 
_atom_site.auth_asym_id          H 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           235 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           1 
#