data_4V0S
#
_model_server_result.job_id            VZS2ArHLA-cIJhS_7TUHeQ 
_model_server_result.datetime_utc      '2024-12-21 16:15:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4v0s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1145}' 
#
_entry.id    4V0S 
#
_exptl.entry_id    4V0S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              370.226 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R,2S,4S,5R)-2-(2,3,4,5,6-pentafluorophenyl)methyl-1,4,5-trihydroxy-3-oxocyclohexane-1-carboxylic acid' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4V0S 
_cell.length_a            38.848 
_cell.length_b            65.187 
_cell.length_c            94.755 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4V0S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 39 A GLU 39 1_555 G NA NA . A NA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc2 A OE2 GLU 39 A GLU 39 1_555 G NA NA . A NA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc3 A OE1 GLU 42 A GLU 42 1_555 G NA NA . A NA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc4 G NA NA . A NA 1151 1_555 B OE2 GLU 20 B GLU 20 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc5 G NA NA . A NA 1151 1_555 K O HOH . B HOH 2011 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
#
_chem_comp.formula           'C14 H11 F5 O6' 
_chem_comp.formula_weight    370.226 
_chem_comp.id                2HN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R,2S,4S,5R)-2-(2,3,4,5,6-pentafluorophenyl)methyl-1,4,5-trihydroxy-3-oxocyclohexane-1-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(1R,2S,4S,5R)-2-(perfluorophenyl)methyl-1,4,5-trihydroxy-3-oxocyclohexane-1-carboxylic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FAK CAT 2HN sing 1 n n 
CAT CAR 2HN sing 2 n y 
CAT CAU 2HN doub 3 n y 
CAR FAI 2HN sing 4 n n 
CAR CAP 2HN doub 5 n y 
CAP FAG 2HN sing 6 n n 
CAP CAQ 2HN sing 7 n y 
CAQ FAH 2HN sing 8 n n 
CAQ CAS 2HN doub 9 n y 
CAS FAJ 2HN sing 10 n n 
CAS CAU 2HN sing 11 n y 
CAU CAL 2HN sing 12 n n 
CAL CAX 2HN sing 13 n n 
CAX CAY 2HN sing 14 n n 
CAX CAO 2HN sing 15 n n 
CAY OAF 2HN sing 16 n n 
CAY CAN 2HN sing 17 n n 
CAY CAM 2HN sing 18 n n 
CAN OAC 2HN sing 19 n n 
CAN OAA 2HN doub 20 n n 
CAO OAB 2HN doub 21 n n 
CAO CAW 2HN sing 22 n n 
CAW OAE 2HN sing 23 n n 
CAW CAV 2HN sing 24 n n 
CAV OAD 2HN sing 25 n n 
CAV CAM 2HN sing 26 n n 
CAL HAL1 2HN sing 27 n n 
CAL HAL2 2HN sing 28 n n 
CAX HAX 2HN sing 29 n n 
OAF HAF 2HN sing 30 n n 
CAM HAM1 2HN sing 31 n n 
CAM HAM2 2HN sing 32 n n 
OAC HAC 2HN sing 33 n n 
CAW HAW 2HN sing 34 n n 
OAE HAE 2HN sing 35 n n 
CAV HAV 2HN sing 36 n n 
OAD HAD 2HN sing 37 n n 
#
_atom_sites.entry_id                     4V0S 
_atom_sites.fract_transf_matrix[1][1]    0.025741 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01534 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010554 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 2HN A 1 1147 1147 2HN 2HN . 
D 2 2HN A 1 1148 1148 2HN 2HN . 
E 3 7HN A 1 1149 1149 7HN 7HN . 
F 4 CL A 1 1150 1150 CL CL . 
G 5 NA A 1 1151 1151 NA NA . 
H 2 2HN B 1 1145 1145 2HN 2HN . 
I 4 CL B 1 1146 1146 CL CL . 
J 6 HOH A 1 2001 2001 HOH HOH . 
J 6 HOH A 2 2002 2002 HOH HOH . 
J 6 HOH A 3 2003 2003 HOH HOH . 
J 6 HOH A 4 2004 2004 HOH HOH . 
J 6 HOH A 5 2005 2005 HOH HOH . 
J 6 HOH A 6 2006 2006 HOH HOH . 
J 6 HOH A 7 2007 2007 HOH HOH . 
J 6 HOH A 8 2008 2008 HOH HOH . 
J 6 HOH A 9 2009 2009 HOH HOH . 
J 6 HOH A 10 2010 2010 HOH HOH . 
J 6 HOH A 11 2011 2011 HOH HOH . 
J 6 HOH A 12 2012 2012 HOH HOH . 
J 6 HOH A 13 2013 2013 HOH HOH . 
J 6 HOH A 14 2014 2014 HOH HOH . 
J 6 HOH A 15 2015 2015 HOH HOH . 
J 6 HOH A 16 2016 2016 HOH HOH . 
J 6 HOH A 17 2017 2017 HOH HOH . 
J 6 HOH A 18 2018 2018 HOH HOH . 
J 6 HOH A 19 2019 2019 HOH HOH . 
J 6 HOH A 20 2020 2020 HOH HOH . 
J 6 HOH A 21 2021 2021 HOH HOH . 
J 6 HOH A 22 2022 2022 HOH HOH . 
J 6 HOH A 23 2023 2023 HOH HOH . 
J 6 HOH A 24 2024 2024 HOH HOH . 
J 6 HOH A 25 2025 2025 HOH HOH . 
J 6 HOH A 26 2026 2026 HOH HOH . 
J 6 HOH A 27 2027 2027 HOH HOH . 
J 6 HOH A 28 2028 2028 HOH HOH . 
J 6 HOH A 29 2029 2029 HOH HOH . 
J 6 HOH A 30 2030 2030 HOH HOH . 
J 6 HOH A 31 2031 2031 HOH HOH . 
J 6 HOH A 32 2032 2032 HOH HOH . 
J 6 HOH A 33 2033 2033 HOH HOH . 
J 6 HOH A 34 2034 2034 HOH HOH . 
J 6 HOH A 35 2035 2035 HOH HOH . 
J 6 HOH A 36 2036 2036 HOH HOH . 
J 6 HOH A 37 2037 2037 HOH HOH . 
J 6 HOH A 38 2038 2038 HOH HOH . 
J 6 HOH A 39 2039 2039 HOH HOH . 
J 6 HOH A 40 2040 2040 HOH HOH . 
J 6 HOH A 41 2041 2041 HOH HOH . 
J 6 HOH A 42 2042 2042 HOH HOH . 
J 6 HOH A 43 2043 2043 HOH HOH . 
J 6 HOH A 44 2044 2044 HOH HOH . 
J 6 HOH A 45 2045 2045 HOH HOH . 
J 6 HOH A 46 2046 2046 HOH HOH . 
J 6 HOH A 47 2047 2047 HOH HOH . 
J 6 HOH A 48 2048 2048 HOH HOH . 
J 6 HOH A 49 2049 2049 HOH HOH . 
J 6 HOH A 50 2050 2050 HOH HOH . 
J 6 HOH A 51 2051 2051 HOH HOH . 
J 6 HOH A 52 2052 2052 HOH HOH . 
J 6 HOH A 53 2053 2053 HOH HOH . 
J 6 HOH A 54 2054 2054 HOH HOH . 
J 6 HOH A 55 2055 2055 HOH HOH . 
J 6 HOH A 56 2056 2056 HOH HOH . 
J 6 HOH A 57 2057 2057 HOH HOH . 
J 6 HOH A 58 2058 2058 HOH HOH . 
J 6 HOH A 59 2059 2059 HOH HOH . 
J 6 HOH A 60 2060 2060 HOH HOH . 
J 6 HOH A 61 2061 2061 HOH HOH . 
J 6 HOH A 62 2062 2062 HOH HOH . 
J 6 HOH A 63 2063 2063 HOH HOH . 
J 6 HOH A 64 2064 2064 HOH HOH . 
J 6 HOH A 65 2065 2065 HOH HOH . 
J 6 HOH A 66 2066 2066 HOH HOH . 
J 6 HOH A 67 2067 2067 HOH HOH . 
J 6 HOH A 68 2068 2068 HOH HOH . 
J 6 HOH A 69 2069 2069 HOH HOH . 
J 6 HOH A 70 2070 2070 HOH HOH . 
J 6 HOH A 71 2071 2071 HOH HOH . 
J 6 HOH A 72 2072 2072 HOH HOH . 
J 6 HOH A 73 2073 2073 HOH HOH . 
J 6 HOH A 74 2074 2074 HOH HOH . 
J 6 HOH A 75 2075 2075 HOH HOH . 
J 6 HOH A 76 2076 2076 HOH HOH . 
J 6 HOH A 77 2077 2077 HOH HOH . 
J 6 HOH A 78 2078 2078 HOH HOH . 
J 6 HOH A 79 2079 2079 HOH HOH . 
J 6 HOH A 80 2080 2080 HOH HOH . 
J 6 HOH A 81 2081 2081 HOH HOH . 
J 6 HOH A 82 2082 2082 HOH HOH . 
J 6 HOH A 83 2083 2083 HOH HOH . 
J 6 HOH A 84 2084 2084 HOH HOH . 
J 6 HOH A 85 2085 2085 HOH HOH . 
J 6 HOH A 86 2086 2086 HOH HOH . 
J 6 HOH A 87 2087 2087 HOH HOH . 
J 6 HOH A 88 2088 2088 HOH HOH . 
J 6 HOH A 89 2089 2089 HOH HOH . 
K 6 HOH B 1 2001 2001 HOH HOH . 
K 6 HOH B 2 2002 2002 HOH HOH . 
K 6 HOH B 3 2003 2003 HOH HOH . 
K 6 HOH B 4 2004 2004 HOH HOH . 
K 6 HOH B 5 2005 2005 HOH HOH . 
K 6 HOH B 6 2006 2006 HOH HOH . 
K 6 HOH B 7 2007 2007 HOH HOH . 
K 6 HOH B 8 2008 2008 HOH HOH . 
K 6 HOH B 9 2009 2009 HOH HOH . 
K 6 HOH B 10 2010 2010 HOH HOH . 
K 6 HOH B 11 2011 2011 HOH HOH . 
K 6 HOH B 12 2012 2012 HOH HOH . 
K 6 HOH B 13 2013 2013 HOH HOH . 
K 6 HOH B 14 2014 2014 HOH HOH . 
K 6 HOH B 15 2015 2015 HOH HOH . 
K 6 HOH B 16 2016 2016 HOH HOH . 
K 6 HOH B 17 2017 2017 HOH HOH . 
K 6 HOH B 18 2018 2018 HOH HOH . 
K 6 HOH B 19 2019 2019 HOH HOH . 
K 6 HOH B 20 2020 2020 HOH HOH . 
K 6 HOH B 21 2021 2021 HOH HOH . 
K 6 HOH B 22 2022 2022 HOH HOH . 
K 6 HOH B 23 2023 2023 HOH HOH . 
K 6 HOH B 24 2024 2024 HOH HOH . 
K 6 HOH B 25 2025 2025 HOH HOH . 
K 6 HOH B 26 2026 2026 HOH HOH . 
K 6 HOH B 27 2027 2027 HOH HOH . 
K 6 HOH B 28 2028 2028 HOH HOH . 
K 6 HOH B 29 2029 2029 HOH HOH . 
K 6 HOH B 30 2030 2030 HOH HOH . 
K 6 HOH B 31 2031 2031 HOH HOH . 
K 6 HOH B 32 2032 2032 HOH HOH . 
K 6 HOH B 33 2033 2033 HOH HOH . 
K 6 HOH B 34 2034 2034 HOH HOH . 
K 6 HOH B 35 2035 2035 HOH HOH . 
K 6 HOH B 36 2036 2036 HOH HOH . 
K 6 HOH B 37 2037 2037 HOH HOH . 
K 6 HOH B 38 2038 2038 HOH HOH . 
K 6 HOH B 39 2039 2039 HOH HOH . 
K 6 HOH B 40 2040 2040 HOH HOH . 
K 6 HOH B 41 2041 2041 HOH HOH . 
K 6 HOH B 42 2042 2042 HOH HOH . 
K 6 HOH B 43 2043 2043 HOH HOH . 
K 6 HOH B 44 2044 2044 HOH HOH . 
K 6 HOH B 45 2045 2045 HOH HOH . 
K 6 HOH B 46 2046 2046 HOH HOH . 
K 6 HOH B 47 2047 2047 HOH HOH . 
K 6 HOH B 48 2048 2048 HOH HOH . 
K 6 HOH B 49 2049 2049 HOH HOH . 
K 6 HOH B 50 2050 2050 HOH HOH . 
K 6 HOH B 51 2051 2051 HOH HOH . 
K 6 HOH B 52 2052 2052 HOH HOH . 
K 6 HOH B 53 2053 2053 HOH HOH . 
K 6 HOH B 54 2054 2054 HOH HOH . 
K 6 HOH B 55 2055 2055 HOH HOH . 
K 6 HOH B 56 2056 2056 HOH HOH . 
K 6 HOH B 57 2057 2057 HOH HOH . 
K 6 HOH B 58 2058 2058 HOH HOH . 
K 6 HOH B 59 2059 2059 HOH HOH . 
K 6 HOH B 60 2060 2060 HOH HOH . 
K 6 HOH B 61 2061 2061 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 F FAK 2HN . . . H 2 -3.383 25.177 31.865 1 18.24 ? FAK 2HN 1145 B 1 
HETATM 2 C CAT 2HN . . . H 2 -4.047 26.258 32.281 1 12.76 ? CAT 2HN 1145 B 1 
HETATM 3 C CAR 2HN . . . H 2 -5.166 26.097 33.091 1 15 ? CAR 2HN 1145 B 1 
HETATM 4 F FAI 2HN . . . H 2 -5.502 24.88 33.531 1 22.19 ? FAI 2HN 1145 B 1 
HETATM 5 C CAP 2HN . . . H 2 -5.87 27.193 33.514 1 17.62 ? CAP 2HN 1145 B 1 
HETATM 6 F FAG 2HN . . . H 2 -6.917 27.012 34.314 1 24.53 ? FAG 2HN 1145 B 1 
HETATM 7 C CAQ 2HN . . . H 2 -5.496 28.46 33.096 1 15.74 ? CAQ 2HN 1145 B 1 
HETATM 8 F FAH 2HN . . . H 2 -6.202 29.522 33.508 1 24.36 ? FAH 2HN 1145 B 1 
HETATM 9 C CAS 2HN . . . H 2 -4.409 28.606 32.249 1 13.98 ? CAS 2HN 1145 B 1 
HETATM 10 F FAJ 2HN . . . H 2 -4.022 29.815 31.843 1 17.52 ? FAJ 2HN 1145 B 1 
HETATM 11 C CAU 2HN . . . H 2 -3.677 27.501 31.802 1 11.97 ? CAU 2HN 1145 B 1 
HETATM 12 C CAL 2HN . . . H 2 -2.473 27.638 30.88 1 11.31 ? CAL 2HN 1145 B 1 
HETATM 13 C CAX 2HN . . . H 2 -1.141 27.643 31.643 1 10.5 ? CAX 2HN 1145 B 1 
HETATM 14 C CAY 2HN . . . H 2 0.101 27.619 30.72 1 10.72 ? CAY 2HN 1145 B 1 
HETATM 15 O OAF 2HN . . . H 2 1.235 27.411 31.552 1 13.14 ? OAF 2HN 1145 B 1 
HETATM 16 C CAN 2HN . . . H 2 -0.034 26.415 29.754 1 12.24 ? CAN 2HN 1145 B 1 
HETATM 17 O OAC 2HN . . . H 2 0.2 25.295 30.235 1 11.4 ? OAC 2HN 1145 B 1 
HETATM 18 O OAA 2HN . . . H 2 -0.47 26.607 28.582 1 12.95 ? OAA 2HN 1145 B 1 
HETATM 19 C CAO 2HN . . . H 2 -1.109 28.924 32.484 1 10.57 ? CAO 2HN 1145 B 1 
HETATM 20 O OAB 2HN . . . H 2 -1.38 28.867 33.668 1 12.04 ? OAB 2HN 1145 B 1 
HETATM 21 C CAW 2HN . . . H 2 -0.856 30.247 31.807 1 13.88 ? CAW 2HN 1145 B 1 
HETATM 22 O OAE 2HN . . . H 2 -0.74 31.292 32.794 1 15.04 ? OAE 2HN 1145 B 1 
HETATM 23 C CAV 2HN . . . H 2 0.449 30.115 31.01 1 12.35 ? CAV 2HN 1145 B 1 
HETATM 24 O OAD 2HN . . . H 2 0.656 31.362 30.275 1 16.05 ? OAD 2HN 1145 B 1 
HETATM 25 C CAM 2HN . . . H 2 0.361 28.965 29.99 1 11.27 ? CAM 2HN 1145 B 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           1320 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           25 
#