data_4V1F # _model_server_result.job_id AMIGKbWMJecGIk9nenMCog _model_server_result.datetime_utc '2024-11-16 19:02:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4v1f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1091}' # _entry.id 4V1F # _exptl.entry_id 4V1F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4V1F _cell.length_a 75.048 _cell.length_b 75.048 _cell.length_c 166.55 _cell.Z_PDB 27 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4V1F _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_145 -x+y-4,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -262.668 -64.993475 0 3 'crystal symmetry operation' 2_485 -y-1,x-y+3,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -187.62 194.980424 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 K N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4V1F _atom_sites.fract_transf_matrix[1][1] 0.013325 _atom_sites.fract_transf_matrix[1][2] 0.007693 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015386 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 BQ1 A 1 1087 1087 BQ1 BQ1 . E 2 BQ1 B 1 1087 1087 BQ1 BQ1 . F 3 BOG B 1 1088 1088 BOG BOG . G 3 BOG B 1 1089 1089 BOG BOG . H 3 BOG B 1 1090 1090 BOG BOG . I 3 BOG B 1 1091 1091 BOG BOG . J 2 BQ1 C 1 1087 1087 BQ1 BQ1 . K 3 BOG C 1 1088 1088 BOG BOG . L 4 HOH A 1 2001 2001 HOH HOH . L 4 HOH A 2 2002 2002 HOH HOH . L 4 HOH A 3 2003 2003 HOH HOH . L 4 HOH A 4 2004 2004 HOH HOH . L 4 HOH A 5 2005 2005 HOH HOH . L 4 HOH A 6 2006 2006 HOH HOH . L 4 HOH A 7 2008 2008 HOH HOH . L 4 HOH A 8 2009 2009 HOH HOH . L 4 HOH A 9 2010 2010 HOH HOH . L 4 HOH A 10 2011 2011 HOH HOH . L 4 HOH A 11 2012 2012 HOH HOH . L 4 HOH A 12 2013 2013 HOH HOH . L 4 HOH A 13 2014 2014 HOH HOH . L 4 HOH A 14 2015 2015 HOH HOH . L 4 HOH A 15 2016 2016 HOH HOH . L 4 HOH A 16 2017 2017 HOH HOH . L 4 HOH A 17 2018 2018 HOH HOH . L 4 HOH A 18 2019 2019 HOH HOH . L 4 HOH A 19 2020 2020 HOH HOH . L 4 HOH A 20 2021 2021 HOH HOH . L 4 HOH A 21 2022 2022 HOH HOH . L 4 HOH A 22 2023 2023 HOH HOH . L 4 HOH A 23 2024 2024 HOH HOH . L 4 HOH A 24 2025 2025 HOH HOH . L 4 HOH A 25 2026 2026 HOH HOH . L 4 HOH A 26 2027 2027 HOH HOH . L 4 HOH A 27 2028 2028 HOH HOH . L 4 HOH A 28 2029 2029 HOH HOH . L 4 HOH A 29 2030 2030 HOH HOH . L 4 HOH A 30 2031 2031 HOH HOH . L 4 HOH A 31 2032 2032 HOH HOH . L 4 HOH A 32 2033 2033 HOH HOH . L 4 HOH A 33 2034 2034 HOH HOH . L 4 HOH A 34 2035 2035 HOH HOH . L 4 HOH A 35 2036 2036 HOH HOH . L 4 HOH A 36 2037 2037 HOH HOH . L 4 HOH A 37 2038 2038 HOH HOH . L 4 HOH A 38 2039 2039 HOH HOH . L 4 HOH A 39 2040 2040 HOH HOH . L 4 HOH A 40 2041 2041 HOH HOH . M 4 HOH B 1 2001 2001 HOH HOH . M 4 HOH B 2 2002 2002 HOH HOH . M 4 HOH B 3 2003 2003 HOH HOH . M 4 HOH B 4 2004 2004 HOH HOH . M 4 HOH B 5 2005 2005 HOH HOH . M 4 HOH B 6 2006 2006 HOH HOH . M 4 HOH B 7 2007 2007 HOH HOH . M 4 HOH B 8 2008 2008 HOH HOH . M 4 HOH B 9 2009 2009 HOH HOH . M 4 HOH B 10 2010 2010 HOH HOH . M 4 HOH B 11 2011 2011 HOH HOH . M 4 HOH B 12 2012 2012 HOH HOH . M 4 HOH B 13 2013 2013 HOH HOH . M 4 HOH B 14 2014 2014 HOH HOH . M 4 HOH B 15 2015 2015 HOH HOH . M 4 HOH B 16 2016 2016 HOH HOH . M 4 HOH B 17 2018 2018 HOH HOH . M 4 HOH B 18 2019 2019 HOH HOH . M 4 HOH B 19 2020 2020 HOH HOH . M 4 HOH B 20 2021 2021 HOH HOH . M 4 HOH B 21 2022 2022 HOH HOH . M 4 HOH B 22 2023 2023 HOH HOH . M 4 HOH B 23 2024 2024 HOH HOH . M 4 HOH B 24 2025 2025 HOH HOH . M 4 HOH B 25 2026 2026 HOH HOH . M 4 HOH B 26 2027 2027 HOH HOH . M 4 HOH B 27 2028 2028 HOH HOH . M 4 HOH B 28 2029 2029 HOH HOH . M 4 HOH B 29 2030 2030 HOH HOH . M 4 HOH B 30 2031 2031 HOH HOH . N 4 HOH C 1 2001 2001 HOH HOH . N 4 HOH C 2 2002 2002 HOH HOH . N 4 HOH C 3 2003 2003 HOH HOH . N 4 HOH C 4 2004 2004 HOH HOH . N 4 HOH C 5 2005 2005 HOH HOH . N 4 HOH C 6 2006 2006 HOH HOH . N 4 HOH C 7 2007 2007 HOH HOH . N 4 HOH C 8 2008 2008 HOH HOH . N 4 HOH C 9 2009 2009 HOH HOH . N 4 HOH C 10 2010 2010 HOH HOH . N 4 HOH C 11 2011 2011 HOH HOH . N 4 HOH C 12 2012 2012 HOH HOH . N 4 HOH C 13 2013 2013 HOH HOH . N 4 HOH C 14 2014 2014 HOH HOH . N 4 HOH C 15 2015 2015 HOH HOH . N 4 HOH C 16 2016 2016 HOH HOH . N 4 HOH C 17 2017 2017 HOH HOH . N 4 HOH C 18 2018 2018 HOH HOH . N 4 HOH C 19 2019 2019 HOH HOH . N 4 HOH C 20 2020 2020 HOH HOH . N 4 HOH C 21 2021 2021 HOH HOH . N 4 HOH C 22 2022 2022 HOH HOH . N 4 HOH C 23 2023 2023 HOH HOH . N 4 HOH C 24 2024 2024 HOH HOH . N 4 HOH C 25 2025 2025 HOH HOH . N 4 HOH C 26 2026 2026 HOH HOH . N 4 HOH C 27 2027 2027 HOH HOH . N 4 HOH C 28 2028 2028 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . I 3 -168.64 62.401 16.71 1 94.42 ? C1 BOG 1091 B 1 HETATM 2 O O1 BOG . . . I 3 -167.762 61.647 17.536 1 88.33 ? O1 BOG 1091 B 1 HETATM 3 C C2 BOG . . . I 3 -167.747 63.428 16.015 1 97.45 ? C2 BOG 1091 B 1 HETATM 4 O O2 BOG . . . I 3 -167.44 64.473 16.946 1 98.01 ? O2 BOG 1091 B 1 HETATM 5 C C3 BOG . . . I 3 -168.369 64.032 14.761 1 100.51 ? C3 BOG 1091 B 1 HETATM 6 O O3 BOG . . . I 3 -167.367 64.752 14.035 1 102.19 ? O3 BOG 1091 B 1 HETATM 7 C C4 BOG . . . I 3 -168.955 62.939 13.884 1 99.93 ? C4 BOG 1091 B 1 HETATM 8 O O4 BOG . . . I 3 -169.596 63.511 12.739 1 101.67 ? O4 BOG 1091 B 1 HETATM 9 C C5 BOG . . . I 3 -169.962 62.175 14.725 1 98.23 ? C5 BOG 1091 B 1 HETATM 10 O O5 BOG . . . I 3 -169.234 61.512 15.759 1 96.64 ? O5 BOG 1091 B 1 HETATM 11 C C6 BOG . . . I 3 -170.753 61.168 13.899 1 97.97 ? C6 BOG 1091 B 1 HETATM 12 O O6 BOG . . . I 3 -171.055 61.734 12.618 1 98.46 ? O6 BOG 1091 B 1 HETATM 13 C C1' BOG . . . I 3 -168.187 61.523 18.889 1 84.59 ? C1' BOG 1091 B 1 HETATM 14 C C2' BOG . . . I 3 -166.952 61.161 19.706 1 80.52 ? C2' BOG 1091 B 1 HETATM 15 C C3' BOG . . . I 3 -167.295 60.571 21.068 1 78.04 ? C3' BOG 1091 B 1 HETATM 16 C C4' BOG . . . I 3 -167.301 59.047 21.028 1 75.36 ? C4' BOG 1091 B 1 HETATM 17 C C5' BOG . . . I 3 -168.683 58.508 20.676 1 75.28 ? C5' BOG 1091 B 1 HETATM 18 C C6' BOG . . . I 3 -168.949 57.185 21.385 1 72.79 ? C6' BOG 1091 B 1 HETATM 19 C C7' BOG . . . I 3 -170.42 56.8 21.289 1 70.48 ? C7' BOG 1091 B 1 HETATM 20 C C8' BOG . . . I 3 -170.686 55.517 22.044 1 68.95 ? C8' BOG 1091 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #