data_4V1U # _model_server_result.job_id 6vzzNg5mCqUV2wR5dleyEQ _model_server_result.datetime_utc '2024-12-29 14:21:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4v1u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1777}' # _entry.id 4V1U # _exptl.entry_id 4V1U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4V1U _cell.length_a 65.8 _cell.length_b 152.81 _cell.length_c 182.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4V1U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 203 A CYS 203 1_555 E ZN ZN . A ZN 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc2 A SG CYS 206 A CYS 206 1_555 E ZN ZN . A ZN 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc3 A SG CYS 311 A CYS 311 1_555 E ZN ZN . A ZN 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc4 A SG CYS 314 A CYS 314 1_555 E ZN ZN . A ZN 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc5 A OE1 GLU 423 A GLU 423 1_555 G CA CA . A CA 1776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? metalc ? metalc6 A OE2 GLU 423 A GLU 423 1_555 G CA CA . A CA 1776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc7 A OE2 GLU 426 A GLU 426 1_555 G CA CA . A CA 1776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc8 A OE1 GLU 426 A GLU 426 1_555 G CA CA . A CA 1776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.176 ? metalc ? metalc9 A OE2 GLU 640 A GLU 640 1_555 H CA CA . A CA 1777 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? metalc ? metalc10 B SG CYS 203 B CYS 203 1_555 I ZN ZN . B ZN 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc11 B SG CYS 206 B CYS 206 1_555 I ZN ZN . B ZN 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc12 B SG CYS 311 B CYS 311 1_555 I ZN ZN . B ZN 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc13 B SG CYS 314 B CYS 314 1_555 I ZN ZN . B ZN 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc14 B OE2 GLU 423 B GLU 423 1_555 K CA CA . B CA 1776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.029 ? metalc ? metalc15 B OE1 GLU 423 B GLU 423 1_555 K CA CA . B CA 1776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.192 ? metalc ? metalc16 B OE2 GLU 426 B GLU 426 1_555 K CA CA . B CA 1776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc17 B OE1 GLU 640 B GLU 640 1_555 L CA CA . B CA 1777 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4V1U _atom_sites.fract_transf_matrix[1][1] 0.015198 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006544 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005469 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 776 776 ZN ZN . F 4 AMP A 1 777 777 AMP AMP . G 5 CA A 1 1776 1776 CA CA . H 5 CA A 1 1777 1777 CA CA . I 3 ZN B 1 776 776 ZN ZN . J 4 AMP B 1 777 777 AMP AMP . K 5 CA B 1 1776 1776 CA CA . L 5 CA B 1 1777 1777 CA CA . M 6 HOH A 1 2001 2001 HOH HOH . M 6 HOH A 2 2002 2002 HOH HOH . M 6 HOH A 3 2003 2003 HOH HOH . M 6 HOH A 4 2004 2004 HOH HOH . M 6 HOH A 5 2005 2005 HOH HOH . M 6 HOH A 6 2006 2006 HOH HOH . M 6 HOH A 7 2007 2007 HOH HOH . M 6 HOH A 8 2008 2008 HOH HOH . M 6 HOH A 9 2009 2009 HOH HOH . M 6 HOH A 10 2010 2010 HOH HOH . M 6 HOH A 11 2011 2011 HOH HOH . M 6 HOH A 12 2012 2012 HOH HOH . N 6 HOH B 1 2001 2001 HOH HOH . N 6 HOH B 2 2002 2002 HOH HOH . N 6 HOH B 3 2003 2003 HOH HOH . N 6 HOH B 4 2004 2004 HOH HOH . N 6 HOH B 5 2005 2005 HOH HOH . N 6 HOH B 6 2006 2006 HOH HOH . N 6 HOH B 7 2007 2007 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 5 _atom_site.Cartn_x 29.846 _atom_site.Cartn_y 10.486 _atom_site.Cartn_z 74.89 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 104.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1777 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #