data_4V1U
#
_model_server_result.job_id            8avHaIRSs6JQRjjef9jgXw 
_model_server_result.datetime_utc      '2024-12-29 14:38:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4v1u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":777}' 
#
_entry.id    4V1U 
#
_exptl.entry_id    4V1U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4V1U 
_cell.length_a            65.8 
_cell.length_b            152.81 
_cell.length_c            182.84 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4V1U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 203 A CYS 203 1_555 E ZN ZN . A ZN 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc2 A SG CYS 206 A CYS 206 1_555 E ZN ZN . A ZN 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc3 A SG CYS 311 A CYS 311 1_555 E ZN ZN . A ZN 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc4 A SG CYS 314 A CYS 314 1_555 E ZN ZN . A ZN 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc5 A OE1 GLU 423 A GLU 423 1_555 G CA CA . A CA 1776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? 
metalc ? metalc6 A OE2 GLU 423 A GLU 423 1_555 G CA CA . A CA 1776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? 
metalc ? metalc7 A OE2 GLU 426 A GLU 426 1_555 G CA CA . A CA 1776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc8 A OE1 GLU 426 A GLU 426 1_555 G CA CA . A CA 1776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.176 ? 
metalc ? metalc9 A OE2 GLU 640 A GLU 640 1_555 H CA CA . A CA 1777 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? 
metalc ? metalc10 B SG CYS 203 B CYS 203 1_555 I ZN ZN . B ZN 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc11 B SG CYS 206 B CYS 206 1_555 I ZN ZN . B ZN 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc12 B SG CYS 311 B CYS 311 1_555 I ZN ZN . B ZN 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc13 B SG CYS 314 B CYS 314 1_555 I ZN ZN . B ZN 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc14 B OE2 GLU 423 B GLU 423 1_555 K CA CA . B CA 1776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.029 ? 
metalc ? metalc15 B OE1 GLU 423 B GLU 423 1_555 K CA CA . B CA 1776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.192 ? 
metalc ? metalc16 B OE2 GLU 426 B GLU 426 1_555 K CA CA . B CA 1776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? 
metalc ? metalc17 B OE1 GLU 640 B GLU 640 1_555 L CA CA . B CA 1777 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     4V1U 
_atom_sites.fract_transf_matrix[1][1]    0.015198 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006544 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005469 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ZN A 1 776 776 ZN ZN . 
F 4 AMP A 1 777 777 AMP AMP . 
G 5 CA A 1 1776 1776 CA CA . 
H 5 CA A 1 1777 1777 CA CA . 
I 3 ZN B 1 776 776 ZN ZN . 
J 4 AMP B 1 777 777 AMP AMP . 
K 5 CA B 1 1776 1776 CA CA . 
L 5 CA B 1 1777 1777 CA CA . 
M 6 HOH A 1 2001 2001 HOH HOH . 
M 6 HOH A 2 2002 2002 HOH HOH . 
M 6 HOH A 3 2003 2003 HOH HOH . 
M 6 HOH A 4 2004 2004 HOH HOH . 
M 6 HOH A 5 2005 2005 HOH HOH . 
M 6 HOH A 6 2006 2006 HOH HOH . 
M 6 HOH A 7 2007 2007 HOH HOH . 
M 6 HOH A 8 2008 2008 HOH HOH . 
M 6 HOH A 9 2009 2009 HOH HOH . 
M 6 HOH A 10 2010 2010 HOH HOH . 
M 6 HOH A 11 2011 2011 HOH HOH . 
M 6 HOH A 12 2012 2012 HOH HOH . 
N 6 HOH B 1 2001 2001 HOH HOH . 
N 6 HOH B 2 2002 2002 HOH HOH . 
N 6 HOH B 3 2003 2003 HOH HOH . 
N 6 HOH B 4 2004 2004 HOH HOH . 
N 6 HOH B 5 2005 2005 HOH HOH . 
N 6 HOH B 6 2006 2006 HOH HOH . 
N 6 HOH B 7 2007 2007 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . J 4 29.714 8.988 70.404 1 93.46 ? P AMP 777 B 1 
HETATM 2 O O1P AMP . . . J 4 28.295 8.586 70.716 1 94.87 ? O1P AMP 777 B 1 
HETATM 3 O O2P AMP . . . J 4 30.622 9.169 71.599 1 89.15 ? O2P AMP 777 B 1 
HETATM 4 O O3P AMP . . . J 4 29.836 10.036 69.327 1 99.76 ? O3P AMP 777 B 1 
HETATM 5 O O5' AMP . . . J 4 30.289 7.684 69.714 1 65.18 ? O5' AMP 777 B 1 
HETATM 6 C C5' AMP . . . J 4 30.16 6.434 70.371 1 66 ? C5' AMP 777 B 1 
HETATM 7 C C4' AMP . . . J 4 31.249 5.492 69.918 1 66.3 ? C4' AMP 777 B 1 
HETATM 8 O O4' AMP . . . J 4 31.014 5.155 68.542 1 69.04 ? O4' AMP 777 B 1 
HETATM 9 C C3' AMP . . . J 4 32.652 6.084 69.987 1 67.09 ? C3' AMP 777 B 1 
HETATM 10 O O3' AMP . . . J 4 33.593 5.072 70.349 1 63.14 ? O3' AMP 777 B 1 
HETATM 11 C C2' AMP . . . J 4 32.915 6.549 68.566 1 69.56 ? C2' AMP 777 B 1 
HETATM 12 O O2' AMP . . . J 4 34.288 6.563 68.211 1 70.45 ? O2' AMP 777 B 1 
HETATM 13 C C1' AMP . . . J 4 32.132 5.53 67.749 1 71.36 ? C1' AMP 777 B 1 
HETATM 14 N N9 AMP . . . J 4 31.649 6.063 66.464 1 71.44 ? N9 AMP 777 B 1 
HETATM 15 C C8 AMP . . . J 4 30.663 6.967 66.303 1 69.66 ? C8 AMP 777 B 1 
HETATM 16 N N7 AMP . . . J 4 30.47 7.23 64.986 1 72.44 ? N7 AMP 777 B 1 
HETATM 17 C C5 AMP . . . J 4 31.345 6.487 64.289 1 71.06 ? C5 AMP 777 B 1 
HETATM 18 C C6 AMP . . . J 4 31.672 6.29 62.864 1 73.15 ? C6 AMP 777 B 1 
HETATM 19 N N6 AMP . . . J 4 31.006 6.962 61.899 1 76.99 ? N6 AMP 777 B 1 
HETATM 20 N N1 AMP . . . J 4 32.659 5.418 62.563 1 79.5 ? N1 AMP 777 B 1 
HETATM 21 C C2 AMP . . . J 4 33.337 4.74 63.513 1 77.77 ? C2 AMP 777 B 1 
HETATM 22 N N3 AMP . . . J 4 33.086 4.874 64.831 1 71.69 ? N3 AMP 777 B 1 
HETATM 23 C C4 AMP . . . J 4 32.123 5.718 65.268 1 70.66 ? C4 AMP 777 B 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           23 
#