data_4V25 # _model_server_result.job_id ykCC_pFt3wPGNXNzq7XXMg _model_server_result.datetime_utc '2024-11-15 05:38:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4v25 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1369}' # _entry.id 4V25 # _exptl.entry_id 4V25 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 552.956 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[4-(2-chloro-5-methylpyrimidin-4-yl)phenyl]-N-(4-{[(difluoroacetyl)amino]methyl}benzyl)-2,4-dihydroxybenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4V25 _cell.length_a 108.944 _cell.length_b 108.944 _cell.length_c 84.38 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4V25 _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 54.472 -94.348272 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H23 Cl F2 N4 O4' _chem_comp.formula_weight 552.956 _chem_comp.id SZ6 _chem_comp.mon_nstd_flag . _chem_comp.name N-[4-(2-chloro-5-methylpyrimidin-4-yl)phenyl]-N-(4-{[(difluoroacetyl)amino]methyl}benzyl)-2,4-dihydroxybenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C2 SZ6 sing 290 n n C2 C1 SZ6 sing 291 n y C2 C3 SZ6 doub 292 n y C1 N6 SZ6 doub 293 n y N6 C5 SZ6 sing 294 n y C5 CL7 SZ6 sing 295 n n C5 N4 SZ6 doub 296 n y N4 C3 SZ6 sing 297 n y C3 C9 SZ6 sing 298 n n C9 C14 SZ6 sing 299 n y C9 C10 SZ6 doub 300 n y C14 C13 SZ6 doub 301 n y C13 C12 SZ6 sing 302 n y C10 C11 SZ6 sing 303 n y C11 C12 SZ6 doub 304 n y C12 N15 SZ6 sing 305 n n N15 C16 SZ6 sing 306 n n N15 C17 SZ6 sing 307 n n C16 O19 SZ6 doub 308 n n C16 C18 SZ6 sing 309 n n C18 C28 SZ6 sing 310 n y C18 C32 SZ6 doub 311 n y C28 C29 SZ6 doub 312 n y C29 C30 SZ6 sing 313 n y C30 O33 SZ6 sing 314 n n C30 C31 SZ6 doub 315 n y C31 C32 SZ6 sing 316 n y C32 O34 SZ6 sing 317 n n C17 C20 SZ6 sing 318 n n C20 C25 SZ6 sing 319 n y C20 C21 SZ6 doub 320 n y C25 C24 SZ6 doub 321 n y C24 C23 SZ6 sing 322 n y C21 C22 SZ6 sing 323 n y C22 C23 SZ6 doub 324 n y C23 C26 SZ6 sing 325 n n C26 N27 SZ6 sing 326 n n N27 C35 SZ6 sing 327 n n C35 O37 SZ6 doub 328 n n C35 C36 SZ6 sing 329 n n C36 F39 SZ6 sing 330 n n C36 F38 SZ6 sing 331 n n C8 H81C SZ6 sing 332 n n C8 H82C SZ6 sing 333 n n C8 H83C SZ6 sing 334 n n C1 H1 SZ6 sing 335 n n C14 H14 SZ6 sing 336 n n C10 H10 SZ6 sing 337 n n C13 H13 SZ6 sing 338 n n C11 H11 SZ6 sing 339 n n C17 H171 SZ6 sing 340 n n C17 H172 SZ6 sing 341 n n C28 H28 SZ6 sing 342 n n C29 H29 SZ6 sing 343 n n O33 H33 SZ6 sing 344 n n C31 H31 SZ6 sing 345 n n O34 H34 SZ6 sing 346 n n C25 H25 SZ6 sing 347 n n C21 H21 SZ6 sing 348 n n C24 H24 SZ6 sing 349 n n C22 H22 SZ6 sing 350 n n C26 H261 SZ6 sing 351 n n C26 H262 SZ6 sing 352 n n N27 H27 SZ6 sing 353 n n C36 H36 SZ6 sing 354 n n # _atom_sites.entry_id 4V25 _atom_sites.fract_transf_matrix[1][1] 0.009179 _atom_sites.fract_transf_matrix[1][2] 0.0053 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010599 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011851 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TF3 A 1 1367 1367 TF3 TF3 . C 3 MG A 1 1368 1368 MG MG . D 4 SZ6 A 1 1369 1369 SZ6 SZ6 . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . E 5 HOH A 46 2046 2046 HOH HOH . E 5 HOH A 47 2047 2047 HOH HOH . E 5 HOH A 48 2048 2048 HOH HOH . E 5 HOH A 49 2049 2049 HOH HOH . E 5 HOH A 50 2050 2050 HOH HOH . E 5 HOH A 51 2051 2051 HOH HOH . E 5 HOH A 52 2052 2052 HOH HOH . E 5 HOH A 53 2053 2053 HOH HOH . E 5 HOH A 54 2054 2054 HOH HOH . E 5 HOH A 55 2055 2055 HOH HOH . E 5 HOH A 56 2056 2056 HOH HOH . E 5 HOH A 57 2057 2057 HOH HOH . E 5 HOH A 58 2058 2058 HOH HOH . E 5 HOH A 59 2059 2059 HOH HOH . E 5 HOH A 60 2060 2060 HOH HOH . E 5 HOH A 61 2061 2061 HOH HOH . E 5 HOH A 62 2062 2062 HOH HOH . E 5 HOH A 63 2063 2063 HOH HOH . E 5 HOH A 64 2064 2064 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 SZ6 . . . D 4 44.08 -45.528 -6.108 1 57.45 ? C8 SZ6 1369 A 1 HETATM 2 C C2 SZ6 . . . D 4 45.003 -45.093 -7.212 1 61.36 ? C2 SZ6 1369 A 1 HETATM 3 C C1 SZ6 . . . D 4 45.922 -44.106 -6.952 1 60.94 ? C1 SZ6 1369 A 1 HETATM 4 N N6 SZ6 . . . D 4 46.744 -43.704 -7.876 1 60.93 ? N6 SZ6 1369 A 1 HETATM 5 C C5 SZ6 . . . D 4 46.691 -44.252 -9.073 1 64.03 ? C5 SZ6 1369 A 1 HETATM 6 CL CL7 SZ6 . . . D 4 47.742 -43.715 -10.288 1 56.36 ? CL7 SZ6 1369 A 1 HETATM 7 N N4 SZ6 . . . D 4 45.811 -45.199 -9.358 1 61.19 ? N4 SZ6 1369 A 1 HETATM 8 C C3 SZ6 . . . D 4 44.959 -45.66 -8.461 1 60.4 ? C3 SZ6 1369 A 1 HETATM 9 C C9 SZ6 . . . D 4 44.061 -46.651 -8.82 1 53.52 ? C9 SZ6 1369 A 1 HETATM 10 C C14 SZ6 . . . D 4 43.667 -47.651 -7.966 1 49.12 ? C14 SZ6 1369 A 1 HETATM 11 C C13 SZ6 . . . D 4 42.769 -48.625 -8.364 1 51.36 ? C13 SZ6 1369 A 1 HETATM 12 C C10 SZ6 . . . D 4 43.543 -46.647 -10.086 1 50.07 ? C10 SZ6 1369 A 1 HETATM 13 C C11 SZ6 . . . D 4 42.653 -47.619 -10.48 1 49.93 ? C11 SZ6 1369 A 1 HETATM 14 C C12 SZ6 . . . D 4 42.24 -48.607 -9.624 1 49.92 ? C12 SZ6 1369 A 1 HETATM 15 N N15 SZ6 . . . D 4 41.399 -49.526 -10.048 1 46.76 ? N15 SZ6 1369 A 1 HETATM 16 C C16 SZ6 . . . D 4 40.205 -49.214 -10.494 1 44.5 ? C16 SZ6 1369 A 1 HETATM 17 O O19 SZ6 . . . D 4 39.427 -50.021 -10.931 1 35.47 ? O19 SZ6 1369 A 1 HETATM 18 C C18 SZ6 . . . D 4 39.779 -47.783 -10.422 1 43.58 ? C18 SZ6 1369 A 1 HETATM 19 C C28 SZ6 . . . D 4 39.678 -47.151 -9.207 1 42.46 ? C28 SZ6 1369 A 1 HETATM 20 C C29 SZ6 . . . D 4 39.27 -45.84 -9.148 1 37.67 ? C29 SZ6 1369 A 1 HETATM 21 C C30 SZ6 . . . D 4 38.952 -45.181 -10.292 1 34.7 ? C30 SZ6 1369 A 1 HETATM 22 O O33 SZ6 . . . D 4 38.569 -43.922 -10.256 1 34.76 ? O33 SZ6 1369 A 1 HETATM 23 C C31 SZ6 . . . D 4 39.045 -45.803 -11.491 1 35.66 ? C31 SZ6 1369 A 1 HETATM 24 C C32 SZ6 . . . D 4 39.436 -47.108 -11.548 1 44.06 ? C32 SZ6 1369 A 1 HETATM 25 O O34 SZ6 . . . D 4 39.526 -47.728 -12.71 1 47.89 ? O34 SZ6 1369 A 1 HETATM 26 C C17 SZ6 . . . D 4 41.836 -50.903 -10.01 1 46.96 ? C17 SZ6 1369 A 1 HETATM 27 C C20 SZ6 . . . D 4 42.797 -51.251 -11.099 1 55.5 ? C20 SZ6 1369 A 1 HETATM 28 C C25 SZ6 . . . D 4 44.136 -51.42 -10.855 1 54.1 ? C25 SZ6 1369 A 1 HETATM 29 C C24 SZ6 . . . D 4 44.994 -51.734 -11.88 1 54.55 ? C24 SZ6 1369 A 1 HETATM 30 C C21 SZ6 . . . D 4 42.31 -51.429 -12.356 1 56.85 ? C21 SZ6 1369 A 1 HETATM 31 C C22 SZ6 . . . D 4 43.157 -51.751 -13.373 1 57.08 ? C22 SZ6 1369 A 1 HETATM 32 C C23 SZ6 . . . D 4 44.492 -51.921 -13.139 1 55.17 ? C23 SZ6 1369 A 1 HETATM 33 C C26 SZ6 . . . D 4 45.376 -52.254 -14.308 1 57.18 ? C26 SZ6 1369 A 1 HETATM 34 N N27 SZ6 . . . D 4 45.596 -53.675 -14.523 1 62.91 ? N27 SZ6 1369 A 1 HETATM 35 C C35 SZ6 . . . D 4 46.756 -54.19 -14.209 1 72.75 ? C35 SZ6 1369 A 1 HETATM 36 O O37 SZ6 . . . D 4 47.651 -53.566 -13.69 1 84.23 ? O37 SZ6 1369 A 1 HETATM 37 C C36 SZ6 . . . D 4 46.974 -55.634 -14.459 1 78.71 ? C36 SZ6 1369 A 1 HETATM 38 F F39 SZ6 . . . D 4 45.784 -56.27 -14.466 1 79.24 ? F39 SZ6 1369 A 1 HETATM 39 F F38 SZ6 . . . D 4 47.746 -56.087 -13.433 1 72.72 ? F38 SZ6 1369 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 650 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 39 #