data_4V2G # _model_server_result.job_id -JU8S3zE1Auae1ZCtnzBvA _model_server_result.datetime_utc '2024-11-24 06:38:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4v2g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":222}' # _entry.id 4V2G # _exptl.entry_id 4V2G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 478.88 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ISO-7-CHLORTETRACYCLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4V2G _cell.length_a 69.249 _cell.length_b 69.249 _cell.length_c 182.373 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4V2G _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O HOH . A HOH 2014 1_555 E MG MG . B MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc2 F O HOH . A HOH 2015 1_555 E MG MG . B MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc3 B NE2 HIS 99 B HIS 100 1_555 E MG MG . B MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc4 D O11 CTC . B CTC 222 1_555 E MG MG . B MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc5 D O12 CTC . B CTC 222 1_555 E MG MG . B MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc6 E MG MG . B MG 223 1_555 G O HOH . B HOH 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? # _chem_comp.formula 'C22 H23 Cl N2 O8' _chem_comp.formula_weight 478.88 _chem_comp.id ITC _chem_comp.mon_nstd_flag . _chem_comp.name ISO-7-CHLORTETRACYCLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (4S,4AS,6S,8AS)-6-[(1S)-7-CHLORO-4-HYDROXY-1-METHYL-3-OXO-1,3-DIHYDRO-2-BENZOFURAN-1-YL]-4-(DIMETHYLAMINO)-3,8A-DIHYDROXY-1,8-DIOXO-1,4,4A,5,6,7,8,8A-OCTAHYDRONAPHTHALENE-2-CARBOXAMIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 ITC doub 219 n n C1 C2 ITC sing 220 n n C1 C4B ITC sing 221 n n C2 C2' ITC sing 222 n n C2 C3 ITC doub 223 n n C2' O2' ITC doub 224 n n C2' N2' ITC sing 225 n n C3 O3 ITC sing 226 n n C3 C4 ITC sing 227 n n C4 N4 ITC sing 228 n n C4 C4A ITC sing 229 n n N4 C4' ITC sing 230 n n N4 C4D ITC sing 231 n n C4A C5 ITC sing 232 n n C4A C4B ITC sing 233 n n C5 C5A ITC sing 234 n n C5A C6 ITC sing 235 n n C5A C5B ITC sing 236 n n C6 O6 ITC sing 237 n n C6 C6' ITC sing 238 n n C6 C6A ITC sing 239 n n O6 C11 ITC sing 240 n n C6A C7 ITC sing 241 n y C6A C6B ITC doub 242 n y C7 CL7 ITC sing 243 n n C7 C8 ITC doub 244 n y C8 C9 ITC sing 245 n y C9 C10 ITC doub 246 n y C10 O10 ITC sing 247 n n C10 C6B ITC sing 248 n y C6B C11 ITC sing 249 n n O11 C11 ITC doub 250 n n C5B C12 ITC sing 251 n n C12 O12 ITC doub 252 n n C12 C4B ITC sing 253 n n C4B O4B ITC sing 254 n n N2' "H2'1" ITC sing 255 n n N2' "H2'2" ITC sing 256 n n O3 H3 ITC sing 257 n n C4 H4 ITC sing 258 n n C4A H4A ITC sing 259 n n C4' "H4'1" ITC sing 260 n n C4' "H4'2" ITC sing 261 n n C4' "H4'3" ITC sing 262 n n C4D H4D1 ITC sing 263 n n C4D H4D2 ITC sing 264 n n C4D H4D3 ITC sing 265 n n C5 H51C ITC sing 266 n n C5 H52C ITC sing 267 n n C5A H5A ITC sing 268 n n C5B H5B1 ITC sing 269 n n C5B H5B2 ITC sing 270 n n C6' "H6'1" ITC sing 271 n n C6' "H6'2" ITC sing 272 n n C6' "H6'3" ITC sing 273 n n C8 H8 ITC sing 274 n n C9 H9 ITC sing 275 n n O10 H10 ITC sing 276 n n O4B H4B ITC sing 277 n n # _atom_sites.entry_id 4V2G _atom_sites.fract_transf_matrix[1][1] 0.014441 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ITC A 1 222 222 ITC ITC . D 3 CTC B 1 222 222 CTC CTC . E 4 MG B 1 223 223 MG MG . F 5 HOH A 1 2001 2001 HOH HOH . F 5 HOH A 2 2002 2002 HOH HOH . F 5 HOH A 3 2003 2003 HOH HOH . F 5 HOH A 4 2004 2004 HOH HOH . F 5 HOH A 5 2005 2005 HOH HOH . F 5 HOH A 6 2006 2006 HOH HOH . F 5 HOH A 7 2007 2007 HOH HOH . F 5 HOH A 8 2008 2008 HOH HOH . F 5 HOH A 9 2009 2009 HOH HOH . F 5 HOH A 10 2010 2010 HOH HOH . F 5 HOH A 11 2011 2011 HOH HOH . F 5 HOH A 12 2012 2012 HOH HOH . F 5 HOH A 13 2013 2013 HOH HOH . F 5 HOH A 14 2014 2014 HOH HOH . F 5 HOH A 15 2015 2015 HOH HOH . F 5 HOH A 16 2016 2016 HOH HOH . F 5 HOH A 17 2017 2017 HOH HOH . F 5 HOH A 18 2018 2018 HOH HOH . F 5 HOH A 19 2019 2019 HOH HOH . F 5 HOH A 20 2020 2020 HOH HOH . G 5 HOH B 1 2001 2001 HOH HOH . G 5 HOH B 2 2002 2002 HOH HOH . G 5 HOH B 3 2003 2003 HOH HOH . G 5 HOH B 4 2004 2004 HOH HOH . G 5 HOH B 5 2005 2005 HOH HOH . G 5 HOH B 6 2006 2006 HOH HOH . G 5 HOH B 7 2007 2007 HOH HOH . G 5 HOH B 8 2008 2008 HOH HOH . G 5 HOH B 9 2009 2009 HOH HOH . G 5 HOH B 10 2010 2010 HOH HOH . G 5 HOH B 11 2011 2011 HOH HOH . G 5 HOH B 12 2012 2012 HOH HOH . G 5 HOH B 13 2013 2013 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ITC . . . C 2 31.124 18.104 56.753 1 39.94 ? C1 ITC 222 A 1 HETATM 2 O O1 ITC . . . C 2 31.6 18.395 57.859 1 43.15 ? O1 ITC 222 A 1 HETATM 3 C C2 ITC . . . C 2 31.798 17.145 55.965 1 38.62 ? C2 ITC 222 A 1 HETATM 4 C C2' ITC . . . C 2 33.056 16.593 56.337 1 41.25 ? C2' ITC 222 A 1 HETATM 5 O O2' ITC . . . C 2 33.662 15.755 55.667 1 42.87 ? O2' ITC 222 A 1 HETATM 6 N N2' ITC . . . C 2 33.564 17.004 57.491 1 41.64 ? N2' ITC 222 A 1 HETATM 7 C C3 ITC . . . C 2 31.18 16.729 54.809 1 35.35 ? C3 ITC 222 A 1 HETATM 8 O O3 ITC . . . C 2 31.847 15.838 54.063 1 33.37 ? O3 ITC 222 A 1 HETATM 9 C C4 ITC . . . C 2 30.148 17.426 54.163 1 36.23 ? C4 ITC 222 A 1 HETATM 10 N N4 ITC . . . C 2 29.234 16.611 53.289 1 34.75 ? N4 ITC 222 A 1 HETATM 11 C C4' ITC . . . C 2 28.657 17.424 52.211 1 34.49 ? C4' ITC 222 A 1 HETATM 12 C C4D ITC . . . C 2 28.159 15.951 54.01 1 36.7 ? C4D ITC 222 A 1 HETATM 13 C C4A ITC . . . C 2 29.496 18.62 55.041 1 36.45 ? C4A ITC 222 A 1 HETATM 14 C C5 ITC . . . C 2 29.939 20 54.67 1 39.54 ? C5 ITC 222 A 1 HETATM 15 C C5A ITC . . . C 2 29.025 20.991 55.524 1 42.28 ? C5A ITC 222 A 1 HETATM 16 C C6 ITC . . . C 2 29.259 22.503 55.165 1 46.15 ? C6 ITC 222 A 1 HETATM 17 O O6 ITC . . . C 2 30.638 22.734 55.373 1 46.29 ? O6 ITC 222 A 1 HETATM 18 C C6' ITC . . . C 2 28.92 22.834 53.711 1 40.93 ? C6' ITC 222 A 1 HETATM 19 C C6A ITC . . . C 2 28.545 23.397 56.045 1 54.5 ? C6A ITC 222 A 1 HETATM 20 C C7 ITC . . . C 2 27.222 23.622 56.303 1 61.88 ? C7 ITC 222 A 1 HETATM 21 CL CL7 ITC . . . C 2 25.937 22.779 55.533 1 62.25 ? CL7 ITC 222 A 1 HETATM 22 C C8 ITC . . . C 2 26.8 24.571 57.237 1 59.94 ? C8 ITC 222 A 1 HETATM 23 C C9 ITC . . . C 2 27.74 25.311 57.908 1 56.07 ? C9 ITC 222 A 1 HETATM 24 C C10 ITC . . . C 2 29.065 25.061 57.615 1 58.45 ? C10 ITC 222 A 1 HETATM 25 O O10 ITC . . . C 2 30.02 25.773 58.267 1 62.07 ? O10 ITC 222 A 1 HETATM 26 C C6B ITC . . . C 2 29.452 24.127 56.709 1 54.23 ? C6B ITC 222 A 1 HETATM 27 O O11 ITC . . . C 2 31.662 24.32 56.54 1 49.72 ? O11 ITC 222 A 1 HETATM 28 C C5B ITC . . . C 2 29.299 20.772 57.018 1 39.77 ? C5B ITC 222 A 1 HETATM 29 C C12 ITC . . . C 2 29.132 19.438 57.222 1 37.91 ? C12 ITC 222 A 1 HETATM 30 O O12 ITC . . . C 2 28.307 19.105 58.075 1 36.44 ? O12 ITC 222 A 1 HETATM 31 C C4B ITC . . . C 2 29.794 18.449 56.436 1 36.88 ? C4B ITC 222 A 1 HETATM 32 O O4B ITC . . . C 2 29.121 17.208 56.746 1 34.06 ? O4B ITC 222 A 1 HETATM 33 C C11 ITC . . . C 2 30.64 23.732 56.256 1 48.45 ? C11 ITC 222 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 431 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 33 #