data_4V3E # _model_server_result.job_id spWzup33ZNc5rcBcFCtjaQ _model_server_result.datetime_utc '2024-11-27 19:22:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4v3e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":200}' # _entry.id 4V3E # _exptl.entry_id 4V3E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 734.039 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4V3E _cell.length_a 56.019 _cell.length_b 56.019 _cell.length_c 250.505 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4V3E _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG B 202 NAG 3 n C NAG 2 C 2 NAG B 203 NAG 3 n C MAN 3 C 3 MAN B 207 MAN 4 n D NAG 1 D 1 NAG B 204 NAG 4 n D NAG 2 D 2 NAG B 205 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 58 A CYS 524 1_555 A SG CYS 146 A CYS 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf2 A SG CYS 74 A CYS 540 1_555 A SG CYS 84 A CYS 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 127 A CYS 593 1_555 A SG CYS 140 A CYS 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 A SG CYS 144 A CYS 610 1_555 A SG CYS 242 A CYS 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 94 B CYS 101 1_555 B SG CYS 162 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? covale ? covale1 B ND2 ASN 23 B ASN 30 1_555 F C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 B ND2 ASN 40 B ASN 47 1_555 G C1 NAG . B NAG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 B ND2 ASN 112 B ASN 119 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 B ND2 ASN 148 B ASN 155 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale7 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O4 PTY sing 329 n n C1 C6 PTY sing 330 n n C1 HC11 PTY sing 331 n n C1 HC12 PTY sing 332 n n C2 C3 PTY sing 333 n n C2 N1 PTY sing 334 n n C2 HC21 PTY sing 335 n n C2 HC22 PTY sing 336 n n C3 O11 PTY sing 337 n n C3 HC31 PTY sing 338 n n C3 HC32 PTY sing 339 n n O4 C30 PTY sing 340 n n C5 C6 PTY sing 341 n n C5 O14 PTY sing 342 n n C5 HC51 PTY sing 343 n n C5 HC52 PTY sing 344 n n C6 O7 PTY sing 345 n n C6 HC6 PTY sing 346 n n O7 C8 PTY sing 347 n n C8 O10 PTY doub 348 n n C8 C11 PTY sing 349 n n C11 C12 PTY sing 350 n n C11 H111 PTY sing 351 n n C11 H112 PTY sing 352 n n C12 C13 PTY sing 353 n n C12 H121 PTY sing 354 n n C12 H122 PTY sing 355 n n C13 C14 PTY sing 356 n n C13 H131 PTY sing 357 n n C13 H132 PTY sing 358 n n C14 C15 PTY sing 359 n n C14 H141 PTY sing 360 n n C14 H142 PTY sing 361 n n C15 C16 PTY sing 362 n n C15 H151 PTY sing 363 n n C15 H152 PTY sing 364 n n C16 C17 PTY sing 365 n n C16 H161 PTY sing 366 n n C16 H162 PTY sing 367 n n C17 C18 PTY sing 368 n n C17 H171 PTY sing 369 n n C17 H172 PTY sing 370 n n C18 C19 PTY sing 371 n n C18 H181 PTY sing 372 n n C18 H182 PTY sing 373 n n C19 C20 PTY sing 374 n n C19 H191 PTY sing 375 n n C19 H192 PTY sing 376 n n C20 C21 PTY sing 377 n n C20 H201 PTY sing 378 n n C20 H202 PTY sing 379 n n C21 C22 PTY sing 380 n n C21 H211 PTY sing 381 n n C21 H212 PTY sing 382 n n C22 C23 PTY sing 383 n n C22 H221 PTY sing 384 n n C22 H222 PTY sing 385 n n C23 C24 PTY sing 386 n n C23 H231 PTY sing 387 n n C23 H232 PTY sing 388 n n C24 C25 PTY sing 389 n n C24 H241 PTY sing 390 n n C24 H242 PTY sing 391 n n C25 C26 PTY sing 392 n n C25 H251 PTY sing 393 n n C25 H252 PTY sing 394 n n C26 C27 PTY sing 395 n n C26 H261 PTY sing 396 n n C26 H262 PTY sing 397 n n C27 C28 PTY sing 398 n n C27 H271 PTY sing 399 n n C27 H272 PTY sing 400 n n C28 C29 PTY sing 401 n n C28 H281 PTY sing 402 n n C28 H282 PTY sing 403 n n C29 H291 PTY sing 404 n n C29 H292 PTY sing 405 n n C29 H293 PTY sing 406 n n C30 C31 PTY sing 407 n n C30 O30 PTY doub 408 n n C31 C32 PTY sing 409 n n C31 H311 PTY sing 410 n n C31 H312 PTY sing 411 n n C32 C33 PTY sing 412 n n C32 H321 PTY sing 413 n n C32 H322 PTY sing 414 n n C33 C34 PTY sing 415 n n C33 H331 PTY sing 416 n n C33 H332 PTY sing 417 n n C34 C35 PTY sing 418 n n C34 H341 PTY sing 419 n n C34 H342 PTY sing 420 n n C35 C36 PTY sing 421 n n C35 H351 PTY sing 422 n n C35 H352 PTY sing 423 n n C36 C37 PTY sing 424 n n C36 H361 PTY sing 425 n n C36 H362 PTY sing 426 n n C37 C38 PTY sing 427 n n C37 H371 PTY sing 428 n n C37 H372 PTY sing 429 n n C38 C39 PTY sing 430 n n C38 H381 PTY sing 431 n n C38 H382 PTY sing 432 n n C39 C40 PTY sing 433 n n C39 H391 PTY sing 434 n n C39 H392 PTY sing 435 n n C40 C41 PTY sing 436 n n C40 H401 PTY sing 437 n n C40 H402 PTY sing 438 n n C41 C42 PTY sing 439 n n C41 H411 PTY sing 440 n n C41 H412 PTY sing 441 n n C42 C43 PTY sing 442 n n C42 H421 PTY sing 443 n n C42 H422 PTY sing 444 n n C43 C44 PTY sing 445 n n C43 H431 PTY sing 446 n n C43 H432 PTY sing 447 n n C44 H441 PTY sing 448 n n C44 H442 PTY sing 449 n n C44 H443 PTY sing 450 n n P1 O11 PTY sing 451 n n P1 O12 PTY sing 452 n n P1 O13 PTY doub 453 n n P1 O14 PTY sing 454 n n O12 H12O PTY sing 455 n n N1 HN11 PTY sing 456 n n N1 HN12 PTY sing 457 n n # _atom_sites.entry_id 4V3E _atom_sites.fract_transf_matrix[1][1] 0.017851 _atom_sites.fract_transf_matrix[1][2] 0.010306 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 PTY B 1 200 200 PTY PTY . F 6 NAG B 1 201 201 NAG NAG . G 6 NAG B 1 206 206 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . E 5 -8.173 -9.835 22.048 0 21.32 ? C1 PTY 200 B 1 HETATM 2 C C2 PTY . . . E 5 -6.862 -17.221 24.433 0 26.74 ? C2 PTY 200 B 1 HETATM 3 C C3 PTY . . . E 5 -6.236 -15.99 25.122 0 23.86 ? C3 PTY 200 B 1 HETATM 4 O O4 PTY . . . E 5 -8.813 -8.538 22.009 0 21.38 ? O4 PTY 200 B 1 HETATM 5 C C5 PTY . . . E 5 -7.706 -11.811 23.482 0 20.61 ? C5 PTY 200 B 1 HETATM 6 C C6 PTY . . . E 5 -8.278 -10.418 23.432 0 20.35 ? C6 PTY 200 B 1 HETATM 7 O O7 PTY . . . E 5 -9.696 -10.493 23.793 0 20.74 ? O7 PTY 200 B 1 HETATM 8 C C8 PTY . . . E 5 -10.078 -10.01 24.99 0 19.93 ? C8 PTY 200 B 1 HETATM 9 O O10 PTY . . . E 5 -9.665 -10.424 26.042 0 19.28 ? O10 PTY 200 B 1 HETATM 10 C C11 PTY . . . E 5 -11.115 -8.935 24.836 0 20.27 ? C11 PTY 200 B 1 HETATM 11 C C12 PTY . . . E 5 -10.919 -7.755 25.782 0 19.38 ? C12 PTY 200 B 1 HETATM 12 C C13 PTY . . . E 5 -12.178 -7.365 26.531 0 19.34 ? C13 PTY 200 B 1 HETATM 13 C C14 PTY . . . E 5 -12.631 -5.938 26.29 0 19.28 ? C14 PTY 200 B 1 HETATM 14 C C15 PTY . . . E 5 -13.576 -5.406 27.351 0 19.07 ? C15 PTY 200 B 1 HETATM 15 C C16 PTY . . . E 5 -13.101 -4.135 28.03 0 18.55 ? C16 PTY 200 B 1 HETATM 16 C C17 PTY . . . E 5 -13.83 -3.813 29.322 0 18.51 ? C17 PTY 200 B 1 HETATM 17 C C18 PTY . . . E 5 -13.08 -4.237 30.573 0 18.31 ? C18 PTY 200 B 1 HETATM 18 C C19 PTY . . . E 5 -13.784 -3.883 31.875 0 18.64 ? C19 PTY 200 B 1 HETATM 19 C C20 PTY . . . E 5 -14.545 -5.035 32.508 0 18.81 ? C20 PTY 200 B 1 HETATM 20 C C21 PTY . . . E 5 -13.728 -5.876 33.474 0 19.03 ? C21 PTY 200 B 1 HETATM 21 C C22 PTY . . . E 5 -14.126 -7.34 33.498 0 19.03 ? C22 PTY 200 B 1 HETATM 22 C C23 PTY . . . E 5 -13.072 -8.257 34.084 0 19.23 ? C23 PTY 200 B 1 HETATM 23 C C24 PTY . . . E 5 -13.342 -9.732 33.86 0 19.2 ? C24 PTY 200 B 1 HETATM 24 C C25 PTY . . . E 5 -12.475 -10.361 32.786 0 18.7 ? C25 PTY 200 B 1 HETATM 25 C C26 PTY . . . E 5 -13.258 -10.928 31.617 0 18.6 ? C26 PTY 200 B 1 HETATM 26 C C27 PTY . . . E 5 -12.731 -12.256 31.108 0 18.67 ? C27 PTY 200 B 1 HETATM 27 C C28 PTY . . . E 5 -13.542 -13.456 31.551 0 19.53 ? C28 PTY 200 B 1 HETATM 28 C C29 PTY . . . E 5 -12.689 -14.583 32.071 0 21.01 ? C29 PTY 200 B 1 HETATM 29 C C30 PTY . . . E 5 -9.08 -8.016 20.806 0 22.61 ? C30 PTY 200 B 1 HETATM 30 C C31 PTY . . . E 5 -8.246 -6.791 20.549 0 22.11 ? C31 PTY 200 B 1 HETATM 31 O O30 PTY . . . E 5 -9.89 -8.476 20.045 0 24.18 ? O30 PTY 200 B 1 HETATM 32 C C32 PTY . . . E 5 -8.799 -5.862 19.471 0 23.35 ? C32 PTY 200 B 1 HETATM 33 C C33 PTY . . . E 5 -9.344 -4.56 20.029 0 22.86 ? C33 PTY 200 B 1 HETATM 34 C C34 PTY . . . E 5 -10.396 -3.904 19.151 0 24.38 ? C34 PTY 200 B 1 HETATM 35 C C35 PTY . . . E 5 -11.745 -3.733 19.827 0 24.47 ? C35 PTY 200 B 1 HETATM 36 C C36 PTY . . . E 5 -12.741 -2.912 19.027 0 26.24 ? C36 PTY 200 B 1 HETATM 37 C C37 PTY . . . E 5 -12.953 -1.506 19.558 0 25.83 ? C37 PTY 200 B 1 HETATM 38 C C38 PTY . . . E 5 -12.352 -0.419 18.685 0 26.7 ? C38 PTY 200 B 1 HETATM 39 C C39 PTY . . . E 5 -13.34 0.655 18.266 0 28.39 ? C39 PTY 200 B 1 HETATM 40 C C40 PTY . . . E 5 -12.763 2.059 18.267 0 28.39 ? C40 PTY 200 B 1 HETATM 41 C C41 PTY . . . E 5 -13.089 2.861 17.02 0 31.11 ? C41 PTY 200 B 1 HETATM 42 C C42 PTY . . . E 5 -12.407 4.216 16.962 0 31.24 ? C42 PTY 200 B 1 HETATM 43 C C43 PTY . . . E 5 -12.368 4.831 15.577 0 34.11 ? C43 PTY 200 B 1 HETATM 44 C C44 PTY . . . E 5 -12.862 6.257 15.543 0 36.06 ? C44 PTY 200 B 1 HETATM 45 P P1 PTY . . . E 5 -6.796 -13.398 25.405 0 19.86 ? P1 PTY 200 B 1 HETATM 46 O O11 PTY . . . E 5 -7.078 -14.852 24.806 0 21.9 ? O11 PTY 200 B 1 HETATM 47 O O12 PTY . . . E 5 -5.409 -12.888 25.302 0 19.12 ? O12 PTY 200 B 1 HETATM 48 O O13 PTY . . . E 5 -7.362 -13.558 26.819 0 19.5 ? O13 PTY 200 B 1 HETATM 49 O O14 PTY . . . E 5 -7.942 -12.461 24.748 0 20.07 ? O14 PTY 200 B 1 HETATM 50 N N1 PTY . . . E 5 -5.843 -17.848 23.587 0 28.31 ? N1 PTY 200 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 50 #