data_4V58
#
_model_server_result.job_id            Z5m2lxhREwRcpptgu6uusg 
_model_server_result.datetime_utc      '2024-12-16 12:30:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4v58 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":2101}' 
#
_entry.id    4V58 
#
_exptl.entry_id    4V58 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.65 
_cell.angle_gamma         90 
_cell.entry_id            4V58 
_cell.length_a            216.37 
_cell.length_b            414.43 
_cell.length_c            221.51 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4V58 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     4V58 
_atom_sites.fract_transf_matrix[1][1]    0.004622 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001835 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.002413 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004857 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 FMN G 1 2101 2101 FMN FMN . 
N 3 FMN H 1 2101 2101 FMN FMN . 
O 3 FMN I 1 2101 2101 FMN FMN . 
P 3 FMN J 1 2101 2101 FMN FMN . 
Q 3 FMN K 1 2101 2101 FMN FMN . 
R 3 FMN L 1 2101 2101 FMN FMN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . N 3 -1.22 -102.943 73.084 1 60.26 ? N1 FMN 2101 H 1 
HETATM 2 C C2 FMN . . . N 3 -0.302 -102.313 72.029 1 49.08 ? C2 FMN 2101 H 1 
HETATM 3 O O2 FMN . . . N 3 -0.727 -102.158 70.702 1 75.42 ? O2 FMN 2101 H 1 
HETATM 4 N N3 FMN . . . N 3 1.082 -101.848 72.423 1 78.27 ? N3 FMN 2101 H 1 
HETATM 5 C C4 FMN . . . N 3 1.558 -102 73.828 1 51.38 ? C4 FMN 2101 H 1 
HETATM 6 O O4 FMN . . . N 3 2.852 -101.579 74.176 1 53.01 ? O4 FMN 2101 H 1 
HETATM 7 C C4A FMN . . . N 3 0.648 -102.618 74.873 1 25.54 ? C4A FMN 2101 H 1 
HETATM 8 N N5 FMN . . . N 3 1.143 -102.761 76.29 1 32.88 ? N5 FMN 2101 H 1 
HETATM 9 C C5A FMN . . . N 3 0.267 -103.382 77.348 1 31.06 ? C5A FMN 2101 H 1 
HETATM 10 C C6 FMN . . . N 3 0.77 -103.547 78.839 1 29.32 ? C6 FMN 2101 H 1 
HETATM 11 C C7 FMN . . . N 3 -0.169 -104.204 79.918 1 48.43 ? C7 FMN 2101 H 1 
HETATM 12 C C7M FMN . . . N 3 0.321 -104.383 81.377 1 81.61 ? C7M FMN 2101 H 1 
HETATM 13 C C8 FMN . . . N 3 -1.605 -104.692 79.515 1 52.09 ? C8 FMN 2101 H 1 
HETATM 14 C C8M FMN . . . N 3 -2.529 -105.341 80.569 1 110.85 ? C8M FMN 2101 H 1 
HETATM 15 C C9 FMN . . . N 3 -2.099 -104.533 78.048 1 21.52 ? C9 FMN 2101 H 1 
HETATM 16 C C9A FMN . . . N 3 -1.145 -103.863 76.959 1 39.06 ? C9A FMN 2101 H 1 
HETATM 17 N N10 FMN . . . N 3 -1.638 -103.716 75.553 1 48.13 ? N10 FMN 2101 H 1 
HETATM 18 C C10 FMN . . . N 3 -0.752 -103.106 74.478 1 45.18 ? C10 FMN 2101 H 1 
HETATM 19 C C1' FMN . . . N 3 -2.989 -104.212 75.285 1 55.15 ? C1' FMN 2101 H 1 
HETATM 20 C C2' FMN . . . N 3 -2.859 -105.528 74.485 1 77.84 ? C2' FMN 2101 H 1 
HETATM 21 O O2' FMN . . . N 3 -2.001 -105.366 73.378 1 62.85 ? O2' FMN 2101 H 1 
HETATM 22 C C3' FMN . . . N 3 -4.228 -106.135 74.075 1 91.61 ? C3' FMN 2101 H 1 
HETATM 23 O O3' FMN . . . N 3 -4.819 -105.378 73.04 1 67.85 ? O3' FMN 2101 H 1 
HETATM 24 C C4' FMN . . . N 3 -5.182 -106.229 75.304 1 103.48 ? C4' FMN 2101 H 1 
HETATM 25 O O4' FMN . . . N 3 -4.419 -106.271 76.498 1 59.96 ? O4' FMN 2101 H 1 
HETATM 26 C C5' FMN . . . N 3 -6.084 -107.494 75.244 1 58.37 ? C5' FMN 2101 H 1 
HETATM 27 O O5' FMN . . . N 3 -7.102 -107.355 76.212 1 71.09 ? O5' FMN 2101 H 1 
HETATM 28 P P FMN . . . N 3 -7.138 -108.351 77.533 1 76.22 ? P FMN 2101 H 1 
HETATM 29 O O1P FMN . . . N 3 -8.414 -108.247 78.237 1 24.8 ? O1P FMN 2101 H 1 
HETATM 30 O O2P FMN . . . N 3 -6.812 -109.901 77.043 1 77.19 ? O2P FMN 2101 H 1 
HETATM 31 O O3P FMN . . . N 3 -5.977 -107.848 78.59 1 42.71 ? O3P FMN 2101 H 1 
#
_model_server_stats.io_time_ms              316 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    155 
_model_server_stats.query_time_ms           247 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           31 
#