data_4V59
#
_model_server_result.job_id            5SNKu-jQrEcpIQYfIIcbMw 
_model_server_result.datetime_utc      '2024-12-16 10:40:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4v59 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":2101}' 
#
_entry.id    4V59 
#
_exptl.entry_id    4V59 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.57 
_cell.angle_gamma         90 
_cell.entry_id            4V59 
_cell.length_a            215.78 
_cell.length_b            412.67 
_cell.length_c            220.9 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4V59 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 S N N 
? 4 U N N 
? 4 W N N 
? 4 Y N N 
? 4 AA N N 
? 4 CA N N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     4V59 
_atom_sites.fract_transf_matrix[1][1]    0.004634 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001832 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.002423 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004868 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 NAP A 1 1901 1901 NAP NAP . 
N 3 NAP B 1 1901 1901 NAP NAP . 
O 3 NAP C 1 1901 1901 NAP NAP . 
P 3 NAP D 1 1901 1901 NAP NAP . 
Q 3 NAP E 1 1901 1901 NAP NAP . 
R 3 NAP F 1 1901 1901 NAP NAP . 
S 4 FMN G 1 2101 2101 FMN FMN . 
T 3 NAP G 1 2102 2102 NAP NAP . 
U 4 FMN H 1 2101 2101 FMN FMN . 
V 3 NAP H 1 2102 2102 NAP NAP . 
W 4 FMN I 1 2101 2101 FMN FMN . 
X 3 NAP I 1 2102 2102 NAP NAP . 
Y 4 FMN J 1 2101 2101 FMN FMN . 
Z 3 NAP J 1 2102 2102 NAP NAP . 
AA 4 FMN K 1 2101 2101 FMN FMN . 
BA 3 NAP K 1 2102 2102 NAP NAP . 
CA 4 FMN L 1 2101 2101 FMN FMN . 
DA 3 NAP L 1 2102 2102 NAP NAP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . W 4 -63.74 -28.736 0.953 1 63.55 ? N1 FMN 2101 I 1 
HETATM 2 C C2 FMN . . . W 4 -63.12 -29.537 2.107 1 48.13 ? C2 FMN 2101 I 1 
HETATM 3 O O2 FMN . . . W 4 -62.223 -30.587 1.851 1 87.6 ? O2 FMN 2101 I 1 
HETATM 4 N N3 FMN . . . W 4 -63.466 -29.184 3.537 1 49.93 ? N3 FMN 2101 I 1 
HETATM 5 C C4 FMN . . . W 4 -64.404 -28.067 3.834 1 39.65 ? C4 FMN 2101 I 1 
HETATM 6 O O4 FMN . . . W 4 -64.724 -27.747 5.163 1 42.73 ? O4 FMN 2101 I 1 
HETATM 7 C C4A FMN . . . W 4 -65.019 -27.282 2.691 1 40.71 ? C4A FMN 2101 I 1 
HETATM 8 N N5 FMN . . . W 4 -65.972 -26.164 2.998 1 30.67 ? N5 FMN 2101 I 1 
HETATM 9 C C5A FMN . . . W 4 -66.601 -25.381 1.885 1 39.41 ? C5A FMN 2101 I 1 
HETATM 10 C C6 FMN . . . W 4 -67.61 -24.208 2.2 1 42.21 ? C6 FMN 2101 I 1 
HETATM 11 C C7 FMN . . . W 4 -68.261 -23.396 1.033 1 60.25 ? C7 FMN 2101 I 1 
HETATM 12 C C7M FMN . . . W 4 -69.241 -22.253 1.352 1 100.72 ? C7M FMN 2101 I 1 
HETATM 13 C C8 FMN . . . W 4 -67.91 -23.752 -0.454 1 64.91 ? C8 FMN 2101 I 1 
HETATM 14 C C8M FMN . . . W 4 -68.535 -22.96 -1.624 1 103.9 ? C8M FMN 2101 I 1 
HETATM 15 C C9 FMN . . . W 4 -66.92 -24.913 -0.765 1 22.74 ? C9 FMN 2101 I 1 
HETATM 16 C C9A FMN . . . W 4 -66.25 -25.726 0.43 1 25.38 ? C9A FMN 2101 I 1 
HETATM 17 N N10 FMN . . . W 4 -65.299 -26.835 0.117 1 34.38 ? N10 FMN 2101 I 1 
HETATM 18 C C10 FMN . . . W 4 -64.681 -27.638 1.239 1 56.77 ? C10 FMN 2101 I 1 
HETATM 19 C C1' FMN . . . W 4 -65.022 -27.143 -1.288 1 50.73 ? C1' FMN 2101 I 1 
HETATM 20 C C2' FMN . . . W 4 -65.77 -28.467 -1.589 1 57.57 ? C2' FMN 2101 I 1 
HETATM 21 O O2' FMN . . . W 4 -65.42 -29.469 -0.673 1 60.18 ? O2' FMN 2101 I 1 
HETATM 22 C C3' FMN . . . W 4 -65.58 -29.008 -3.015 1 60.59 ? C3' FMN 2101 I 1 
HETATM 23 O O3' FMN . . . W 4 -64.264 -29.485 -3.147 1 64.54 ? O3' FMN 2101 I 1 
HETATM 24 C C4' FMN . . . W 4 -65.901 -27.902 -4.055 1 78.1 ? C4' FMN 2101 I 1 
HETATM 25 O O4' FMN . . . W 4 -66.817 -26.981 -3.501 1 48.02 ? O4' FMN 2101 I 1 
HETATM 26 C C5' FMN . . . W 4 -66.613 -28.482 -5.294 1 77.03 ? C5' FMN 2101 I 1 
HETATM 27 O O5' FMN . . . W 4 -66.447 -27.569 -6.35 1 36.94 ? O5' FMN 2101 I 1 
HETATM 28 P P FMN . . . W 4 -67.7 -26.628 -6.849 1 67.16 ? P FMN 2101 I 1 
HETATM 29 O O1P FMN . . . W 4 -67.435 -26.056 -8.172 1 80.43 ? O1P FMN 2101 I 1 
HETATM 30 O O2P FMN . . . W 4 -69.118 -27.471 -6.856 1 85.28 ? O2P FMN 2101 I 1 
HETATM 31 O O3P FMN . . . W 4 -67.791 -25.402 -5.754 1 67.96 ? O3P FMN 2101 I 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           170 
_model_server_stats.create_model_time_ms    403 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           31 
#