data_4V59
#
_model_server_result.job_id            913mAujIXTnTyeKlx5t-zg 
_model_server_result.datetime_utc      '2024-12-16 10:40:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4v59 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":2102}' 
#
_entry.id    4V59 
#
_exptl.entry_id    4V59 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.57 
_cell.angle_gamma         90 
_cell.entry_id            4V59 
_cell.length_a            215.78 
_cell.length_b            412.67 
_cell.length_c            220.9 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4V59 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 T N N 
? 3 V N N 
? 3 X N N 
? 3 Z N N 
? 3 BA N N 
? 3 DA N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 289 n n 
PA O2A NAP sing 290 n n 
PA O5B NAP sing 291 n n 
PA O3 NAP sing 292 n n 
O2A HOA2 NAP sing 293 n n 
O5B C5B NAP sing 294 n n 
C5B C4B NAP sing 295 n n 
C5B H51A NAP sing 296 n n 
C5B H52A NAP sing 297 n n 
C4B O4B NAP sing 298 n n 
C4B C3B NAP sing 299 n n 
C4B H4B NAP sing 300 n n 
O4B C1B NAP sing 301 n n 
C3B O3B NAP sing 302 n n 
C3B C2B NAP sing 303 n n 
C3B H3B NAP sing 304 n n 
O3B HO3A NAP sing 305 n n 
C2B O2B NAP sing 306 n n 
C2B C1B NAP sing 307 n n 
C2B H2B NAP sing 308 n n 
O2B P2B NAP sing 309 n n 
C1B N9A NAP sing 310 n n 
C1B H1B NAP sing 311 n n 
N9A C8A NAP sing 312 n y 
N9A C4A NAP sing 313 n y 
C8A N7A NAP doub 314 n y 
C8A H8A NAP sing 315 n n 
N7A C5A NAP sing 316 n y 
C5A C6A NAP sing 317 n y 
C5A C4A NAP doub 318 n y 
C6A N6A NAP sing 319 n n 
C6A N1A NAP doub 320 n y 
N6A H61A NAP sing 321 n n 
N6A H62A NAP sing 322 n n 
N1A C2A NAP sing 323 n y 
C2A N3A NAP doub 324 n y 
C2A H2A NAP sing 325 n n 
N3A C4A NAP sing 326 n y 
O3 PN NAP sing 327 n n 
PN O1N NAP doub 328 n n 
PN O2N NAP sing 329 n n 
PN O5D NAP sing 330 n n 
O5D C5D NAP sing 331 n n 
C5D C4D NAP sing 332 n n 
C5D H51N NAP sing 333 n n 
C5D H52N NAP sing 334 n n 
C4D O4D NAP sing 335 n n 
C4D C3D NAP sing 336 n n 
C4D H4D NAP sing 337 n n 
O4D C1D NAP sing 338 n n 
C3D O3D NAP sing 339 n n 
C3D C2D NAP sing 340 n n 
C3D H3D NAP sing 341 n n 
O3D HO3N NAP sing 342 n n 
C2D O2D NAP sing 343 n n 
C2D C1D NAP sing 344 n n 
C2D H2D NAP sing 345 n n 
O2D HO2N NAP sing 346 n n 
C1D N1N NAP sing 347 n n 
C1D H1D NAP sing 348 n n 
N1N C2N NAP sing 349 n y 
N1N C6N NAP doub 350 n y 
C2N C3N NAP doub 351 n y 
C2N H2N NAP sing 352 n n 
C3N C7N NAP sing 353 n n 
C3N C4N NAP sing 354 n y 
C7N O7N NAP doub 355 n n 
C7N N7N NAP sing 356 n n 
N7N H71N NAP sing 357 n n 
N7N H72N NAP sing 358 n n 
C4N C5N NAP doub 359 n y 
C4N H4N NAP sing 360 n n 
C5N C6N NAP sing 361 n y 
C5N H5N NAP sing 362 n n 
C6N H6N NAP sing 363 n n 
P2B O1X NAP doub 364 n n 
P2B O2X NAP sing 365 n n 
P2B O3X NAP sing 366 n n 
O2X HOP2 NAP sing 367 n n 
O3X HOP3 NAP sing 368 n n 
#
_atom_sites.entry_id                     4V59 
_atom_sites.fract_transf_matrix[1][1]    0.004634 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001832 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.002423 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004868 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 NAP A 1 1901 1901 NAP NAP . 
N 3 NAP B 1 1901 1901 NAP NAP . 
O 3 NAP C 1 1901 1901 NAP NAP . 
P 3 NAP D 1 1901 1901 NAP NAP . 
Q 3 NAP E 1 1901 1901 NAP NAP . 
R 3 NAP F 1 1901 1901 NAP NAP . 
S 4 FMN G 1 2101 2101 FMN FMN . 
T 3 NAP G 1 2102 2102 NAP NAP . 
U 4 FMN H 1 2101 2101 FMN FMN . 
V 3 NAP H 1 2102 2102 NAP NAP . 
W 4 FMN I 1 2101 2101 FMN FMN . 
X 3 NAP I 1 2102 2102 NAP NAP . 
Y 4 FMN J 1 2101 2101 FMN FMN . 
Z 3 NAP J 1 2102 2102 NAP NAP . 
AA 4 FMN K 1 2101 2101 FMN FMN . 
BA 3 NAP K 1 2102 2102 NAP NAP . 
CA 4 FMN L 1 2101 2101 FMN FMN . 
DA 3 NAP L 1 2102 2102 NAP NAP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . T 3 53.719 -41.87 -19.954 1 100.11 ? PA NAP 2102 G 1 
HETATM 2 O O1A NAP . . . T 3 55.184 -41.948 -19.747 1 58.69 ? O1A NAP 2102 G 1 
HETATM 3 O O2A NAP . . . T 3 52.972 -42.31 -18.755 1 94.85 ? O2A NAP 2102 G 1 
HETATM 4 O O5B NAP . . . T 3 53.25 -40.383 -20.37 1 63.8 ? O5B NAP 2102 G 1 
HETATM 5 C C5B NAP . . . T 3 52.919 -40.08 -21.72 1 54.83 ? C5B NAP 2102 G 1 
HETATM 6 C C4B NAP . . . T 3 52.236 -38.714 -21.73 1 62.37 ? C4B NAP 2102 G 1 
HETATM 7 O O4B NAP . . . T 3 53.007 -37.722 -22.377 1 61.75 ? O4B NAP 2102 G 1 
HETATM 8 C C3B NAP . . . T 3 50.884 -38.678 -22.438 1 68.38 ? C3B NAP 2102 G 1 
HETATM 9 O O3B NAP . . . T 3 49.862 -39.308 -21.689 1 76.64 ? O3B NAP 2102 G 1 
HETATM 10 C C2B NAP . . . T 3 50.702 -37.183 -22.7 1 91.86 ? C2B NAP 2102 G 1 
HETATM 11 O O2B NAP . . . T 3 50.086 -36.384 -21.692 1 116.14 ? O2B NAP 2102 G 1 
HETATM 12 C C1B NAP . . . T 3 52.144 -36.673 -22.784 1 97.89 ? C1B NAP 2102 G 1 
HETATM 13 N N9A NAP . . . T 3 52.442 -36.2 -24.153 1 112.09 ? N9A NAP 2102 G 1 
HETATM 14 C C8A NAP . . . T 3 53.369 -36.695 -25.034 1 84.01 ? C8A NAP 2102 G 1 
HETATM 15 N N7A NAP . . . T 3 53.304 -35.959 -26.17 1 85.48 ? N7A NAP 2102 G 1 
HETATM 16 C C5A NAP . . . T 3 52.355 -35.009 -26.031 1 68.3 ? C5A NAP 2102 G 1 
HETATM 17 C C6A NAP . . . T 3 51.879 -34.008 -26.867 1 85.12 ? C6A NAP 2102 G 1 
HETATM 18 N N6A NAP . . . T 3 52.372 -33.845 -28.082 1 87.82 ? N6A NAP 2102 G 1 
HETATM 19 N N1A NAP . . . T 3 50.878 -33.166 -26.439 1 128.23 ? N1A NAP 2102 G 1 
HETATM 20 C C2A NAP . . . T 3 50.344 -33.322 -25.176 1 114.9 ? C2A NAP 2102 G 1 
HETATM 21 N N3A NAP . . . T 3 50.819 -34.321 -24.349 1 126.11 ? N3A NAP 2102 G 1 
HETATM 22 C C4A NAP . . . T 3 51.808 -35.149 -24.767 1 103.98 ? C4A NAP 2102 G 1 
HETATM 23 O O3 NAP . . . T 3 53.265 -42.709 -21.257 1 108.91 ? O3 NAP 2102 G 1 
HETATM 24 P PN NAP . . . T 3 53.837 -44.063 -21.904 1 102.83 ? PN NAP 2102 G 1 
HETATM 25 O O1N NAP . . . T 3 53.986 -43.796 -23.354 1 108.4 ? O1N NAP 2102 G 1 
HETATM 26 O O2N NAP . . . T 3 55.005 -44.449 -21.067 1 73.46 ? O2N NAP 2102 G 1 
HETATM 27 O O5D NAP . . . T 3 52.651 -45.15 -21.684 1 87.86 ? O5D NAP 2102 G 1 
HETATM 28 C C5D NAP . . . T 3 51.469 -45.169 -22.475 1 42.36 ? C5D NAP 2102 G 1 
HETATM 29 C C4D NAP . . . T 3 50.455 -46.17 -21.909 1 72.34 ? C4D NAP 2102 G 1 
HETATM 30 O O4D NAP . . . T 3 50.707 -47.477 -22.39 1 94.87 ? O4D NAP 2102 G 1 
HETATM 31 C C3D NAP . . . T 3 50.549 -46.263 -20.392 1 121.52 ? C3D NAP 2102 G 1 
HETATM 32 O O3D NAP . . . T 3 49.252 -46.491 -19.894 1 71.02 ? O3D NAP 2102 G 1 
HETATM 33 C C2D NAP . . . T 3 51.454 -47.459 -20.153 1 111.08 ? C2D NAP 2102 G 1 
HETATM 34 O O2D NAP . . . T 3 51.238 -48.115 -18.921 1 79.54 ? O2D NAP 2102 G 1 
HETATM 35 C C1D NAP . . . T 3 51.075 -48.343 -21.326 1 103.54 ? C1D NAP 2102 G 1 
HETATM 36 N N1N NAP . . . T 3 52.162 -49.254 -21.732 1 97.25 ? N1N NAP 2102 G 1 
HETATM 37 C C2N NAP . . . T 3 51.963 -50.631 -21.593 1 102.4 ? C2N NAP 2102 G 1 
HETATM 38 C C3N NAP . . . T 3 52.951 -51.533 -21.983 1 99.56 ? C3N NAP 2102 G 1 
HETATM 39 C C7N NAP . . . T 3 52.766 -53.026 -21.821 1 91 ? C7N NAP 2102 G 1 
HETATM 40 O O7N NAP . . . T 3 53.627 -53.816 -22.2 1 87.46 ? O7N NAP 2102 G 1 
HETATM 41 N N7N NAP . . . T 3 51.673 -53.411 -21.168 1 109.23 ? N7N NAP 2102 G 1 
HETATM 42 C C4N NAP . . . T 3 54.146 -51.041 -22.5 1 85.19 ? C4N NAP 2102 G 1 
HETATM 43 C C5N NAP . . . T 3 54.36 -49.672 -22.64 1 84.17 ? C5N NAP 2102 G 1 
HETATM 44 C C6N NAP . . . T 3 53.375 -48.767 -22.254 1 44.72 ? C6N NAP 2102 G 1 
HETATM 45 P P2B NAP . . . T 3 48.657 -36.576 -20.953 1 119.93 ? P2B NAP 2102 G 1 
HETATM 46 O O1X NAP . . . T 3 47.964 -35.227 -20.915 1 83.24 ? O1X NAP 2102 G 1 
HETATM 47 O O2X NAP . . . T 3 48.936 -37.032 -19.533 1 70.79 ? O2X NAP 2102 G 1 
HETATM 48 O O3X NAP . . . T 3 47.785 -37.593 -21.675 1 63.62 ? O3X NAP 2102 G 1 
#
_model_server_stats.io_time_ms              85 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    567 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           48 
#