data_4V81
#
_model_server_result.job_id            rSyBHslQ3U6LGDsIMQ9UxQ 
_model_server_result.datetime_utc      '2025-01-03 04:31:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4v81 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"TB","auth_seq_id":1601}' 
#
_entry.id    4V81 
#
_exptl.entry_id    4V81 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    24 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         85.23 
_cell.angle_beta          81.15 
_cell.angle_gamma         61.17 
_cell.entry_id            4V81 
_cell.length_a            159.1 
_cell.length_b            162.54 
_cell.length_c            268.1 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4V81 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexadecameric 16 author_and_software_defined_assembly 1 
PISA hexadecameric 16 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,KC,LC,MC,NC 1 1 
Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,OC,PC,QC 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 GA N N 
? 9 IA N N 
? 9 KA N N 
? 9 MA N N 
? 9 OA N N 
? 9 QA N N 
? 9 SA N N 
? 9 UA N N 
? 9 XA N N 
? 9 AB N N 
? 9 CB N N 
? 9 EB N N 
? 9 HB N N 
? 9 JB N N 
? 9 LB N N 
? 9 PB N N 
? 9 RB N N 
? 9 TB N N 
? 9 VB N N 
? 9 ZB N N 
? 9 BC N N 
? 9 DC N N 
? 9 FC N N 
? 9 IC N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 GA O1B ADP . A ADP 601 1_555 HA BE BEF . A BEF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? 
metalc ? metalc2 IA O1B ADP . B ADP 601 1_555 JA BE BEF . B BEF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? 
metalc ? metalc3 OA O1B ADP . E ADP 601 1_555 PA BE BEF . E BEF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? 
metalc ? metalc4 XA O1B ADP . J ADP 601 1_555 YA BE BEF . J BEF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? 
metalc ? metalc5 EB O1B ADP . N ADP 601 1_555 FB BE BEF . N BEF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? 
metalc ? metalc6 LB O1B ADP . b ADP 1601 1_555 MB BE BEF . b BEF 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? 
metalc ? metalc7 VB O1B ADP . h ADP 1601 1_555 WB BE BEF . h BEF 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? 
metalc ? metalc8 ZB O1B ADP . k ADP 2101 1_555 AC BE BEF . k BEF 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? 
metalc ? metalc9 BC O1B ADP . l ADP 1601 1_555 CC BE BEF . l BEF 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? 
metalc ? metalc10 IC O1B ADP . p ADP 1601 1_555 JC BE BEF . p BEF 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     4V81 
_atom_sites.fract_transf_matrix[1][1]    0.006285 
_atom_sites.fract_transf_matrix[1][2]    -0.00346 
_atom_sites.fract_transf_matrix[1][3]    -0.000943 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007023 
_atom_sites.fract_transf_matrix[2][3]    -0.000073 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003775 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
GA 9 ADP A 1 601 756 ADP ADP . 
HA 10 BEF A 1 602 757 BEF BEF . 
IA 9 ADP B 1 601 756 ADP ADP . 
JA 10 BEF B 1 602 757 BEF BEF . 
KA 9 ADP C 1 1101 756 ADP ADP . 
LA 10 BEF C 1 1102 757 BEF BEF . 
MA 9 ADP D 1 601 756 ADP ADP . 
NA 10 BEF D 1 602 757 BEF BEF . 
OA 9 ADP E 1 601 756 ADP ADP . 
PA 10 BEF E 1 602 757 BEF BEF . 
QA 9 ADP F 1 601 756 ADP ADP . 
RA 10 BEF F 1 602 757 BEF BEF . 
SA 9 ADP G 1 601 756 ADP ADP . 
TA 10 BEF G 1 602 757 BEF BEF . 
UA 9 ADP H 1 601 756 ADP ADP . 
VA 10 BEF H 1 602 757 BEF BEF . 
WA 11 SO4 I 1 600 600 SO4 SO4 . 
XA 9 ADP J 1 601 756 ADP ADP . 
YA 10 BEF J 1 602 757 BEF BEF . 
ZA 11 SO4 K 1 1101 600 SO4 SO4 . 
AB 9 ADP L 1 601 756 ADP ADP . 
BB 10 BEF L 1 602 757 BEF BEF . 
CB 9 ADP M 1 601 756 ADP ADP . 
DB 10 BEF M 1 602 757 BEF BEF . 
EB 9 ADP N 1 601 756 ADP ADP . 
FB 10 BEF N 1 602 757 BEF BEF . 
GB 11 SO4 O 1 600 600 SO4 SO4 . 
HB 9 ADP P 1 601 756 ADP ADP . 
IB 10 BEF P 1 602 757 BEF BEF . 
JB 9 ADP a 1 1601 1756 ADP ADP . 
KB 10 BEF a 1 1602 1757 BEF BEF . 
LB 9 ADP b 1 1601 1756 ADP ADP . 
MB 10 BEF b 1 1602 1757 BEF BEF . 
NB 11 SO4 c 1 2101 1600 SO4 SO4 . 
OB 11 SO4 d 1 1600 1600 SO4 SO4 . 
PB 9 ADP e 1 1601 1756 ADP ADP . 
QB 10 BEF e 1 1602 1757 BEF BEF . 
RB 9 ADP f 1 1601 1756 ADP ADP . 
SB 10 BEF f 1 1602 1757 BEF BEF . 
TB 9 ADP g 1 1601 1756 ADP ADP . 
UB 10 BEF g 1 1602 1757 BEF BEF . 
VB 9 ADP h 1 1601 1756 ADP ADP . 
WB 10 BEF h 1 1602 1757 BEF BEF . 
XB 11 SO4 i 1 1600 1600 SO4 SO4 . 
YB 11 SO4 j 1 1600 1600 SO4 SO4 . 
ZB 9 ADP k 1 2101 1756 ADP ADP . 
AC 10 BEF k 1 2102 1757 BEF BEF . 
BC 9 ADP l 1 1601 1756 ADP ADP . 
CC 10 BEF l 1 1602 1757 BEF BEF . 
DC 9 ADP m 1 1601 1756 ADP ADP . 
EC 10 BEF m 1 1602 1757 BEF BEF . 
FC 9 ADP n 1 1601 1756 ADP ADP . 
GC 10 BEF n 1 1602 1757 BEF BEF . 
HC 11 SO4 o 1 1600 1600 SO4 SO4 . 
IC 9 ADP p 1 1601 1756 ADP ADP . 
JC 10 BEF p 1 1602 1757 BEF BEF . 
KC 12 HOH B 1 800 800 HOH HOH . 
LC 12 HOH E 1 800 800 HOH HOH . 
MC 12 HOH G 1 800 800 HOH HOH . 
NC 12 HOH M 1 800 800 HOH HOH . 
OC 12 HOH e 1 1800 1800 HOH HOH . 
PC 12 HOH g 1 1800 1800 HOH HOH . 
QC 12 HOH m 1 1800 1800 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . TB 9 -9.922 -46.319 -40.319 1 206.66 ? PB ADP 1601 g 1 
HETATM 2 O O1B ADP . . . TB 9 -9.904 -47.966 -40.341 1 168.13 ? O1B ADP 1601 g 1 
HETATM 3 O O2B ADP . . . TB 9 -9.604 -45.745 -41.84 1 26.99 ? O2B ADP 1601 g 1 
HETATM 4 O O3B ADP . . . TB 9 -8.932 -45.812 -39.371 1 205.44 ? O3B ADP 1601 g 1 
HETATM 5 P PA ADP . . . TB 9 -12.56 -45.665 -41.041 1 118.8 ? PA ADP 1601 g 1 
HETATM 6 O O1A ADP . . . TB 9 -13.077 -47.163 -41.496 1 81.86 ? O1A ADP 1601 g 1 
HETATM 7 O O2A ADP . . . TB 9 -13.692 -44.892 -40.539 1 115.95 ? O2A ADP 1601 g 1 
HETATM 8 O O3A ADP . . . TB 9 -11.428 -45.839 -39.86 1 196.73 ? O3A ADP 1601 g 1 
HETATM 9 O O5' ADP . . . TB 9 -11.854 -44.875 -42.305 1 209.77 ? O5' ADP 1601 g 1 
HETATM 10 C C5' ADP . . . TB 9 -12.593 -44.538 -43.442 1 210.77 ? C5' ADP 1601 g 1 
HETATM 11 C C4' ADP . . . TB 9 -12.608 -45.557 -44.578 1 209.25 ? C4' ADP 1601 g 1 
HETATM 12 O O4' ADP . . . TB 9 -11.853 -45.325 -45.815 1 199.85 ? O4' ADP 1601 g 1 
HETATM 13 C C3' ADP . . . TB 9 -12.202 -47.013 -44.266 1 211.98 ? C3' ADP 1601 g 1 
HETATM 14 O O3' ADP . . . TB 9 -11.014 -47.24 -43.557 1 215.53 ? O3' ADP 1601 g 1 
HETATM 15 C C2' ADP . . . TB 9 -12.383 -47.627 -45.633 1 206.18 ? C2' ADP 1601 g 1 
HETATM 16 O O2' ADP . . . TB 9 -13.621 -48.203 -45.94 1 211.54 ? O2' ADP 1601 g 1 
HETATM 17 C C1' ADP . . . TB 9 -11.808 -46.568 -46.523 1 190.01 ? C1' ADP 1601 g 1 
HETATM 18 N N9 ADP . . . TB 9 -10.438 -46.943 -46.796 1 166.64 ? N9 ADP 1601 g 1 
HETATM 19 C C8 ADP . . . TB 9 -9.524 -47.206 -45.882 1 159.81 ? C8 ADP 1601 g 1 
HETATM 20 N N7 ADP . . . TB 9 -8.366 -47.588 -46.529 1 155.3 ? N7 ADP 1601 g 1 
HETATM 21 C C5 ADP . . . TB 9 -8.605 -47.558 -47.871 1 148.85 ? C5 ADP 1601 g 1 
HETATM 22 C C6 ADP . . . TB 9 -7.803 -47.844 -48.932 1 135.86 ? C6 ADP 1601 g 1 
HETATM 23 N N6 ADP . . . TB 9 -6.445 -48.288 -48.685 1 130.9 ? N6 ADP 1601 g 1 
HETATM 24 N N1 ADP . . . TB 9 -8.273 -47.738 -50.167 1 131.89 ? N1 ADP 1601 g 1 
HETATM 25 C C2 ADP . . . TB 9 -9.551 -47.347 -50.363 1 136.46 ? C2 ADP 1601 g 1 
HETATM 26 N N3 ADP . . . TB 9 -10.354 -47.062 -49.307 1 145.78 ? N3 ADP 1601 g 1 
HETATM 27 C C4 ADP . . . TB 9 -9.875 -47.169 -48.062 1 154.35 ? C4 ADP 1601 g 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    555 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          25 
_model_server_stats.element_count           27 
#