data_4V81
#
_model_server_result.job_id            rWesqCnrr9RFPKMOzUd9XA 
_model_server_result.datetime_utc      '2025-01-03 04:21:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4v81 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"YA","auth_seq_id":602}' 
#
_entry.id    4V81 
#
_exptl.entry_id    4V81 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              66.007 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BERYLLIUM TRIFLUORIDE ION' 
_entity.pdbx_number_of_molecules    24 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         85.23 
_cell.angle_beta          81.15 
_cell.angle_gamma         61.17 
_cell.entry_id            4V81 
_cell.length_a            159.1 
_cell.length_b            162.54 
_cell.length_c            268.1 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4V81 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexadecameric 16 author_and_software_defined_assembly 1 
PISA hexadecameric 16 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,KC,LC,MC,NC 1 1 
Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,OC,PC,QC 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 HA N N 
? 10 JA N N 
? 10 LA N N 
? 10 NA N N 
? 10 PA N N 
? 10 RA N N 
? 10 TA N N 
? 10 VA N N 
? 10 YA N N 
? 10 BB N N 
? 10 DB N N 
? 10 FB N N 
? 10 IB N N 
? 10 KB N N 
? 10 MB N N 
? 10 QB N N 
? 10 SB N N 
? 10 UB N N 
? 10 WB N N 
? 10 AC N N 
? 10 CC N N 
? 10 EC N N 
? 10 GC N N 
? 10 JC N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 GA O1B ADP . A ADP 601 1_555 HA BE BEF . A BEF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? 
metalc ? metalc2 IA O1B ADP . B ADP 601 1_555 JA BE BEF . B BEF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? 
metalc ? metalc3 OA O1B ADP . E ADP 601 1_555 PA BE BEF . E BEF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? 
metalc ? metalc4 XA O1B ADP . J ADP 601 1_555 YA BE BEF . J BEF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? 
metalc ? metalc5 EB O1B ADP . N ADP 601 1_555 FB BE BEF . N BEF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? 
metalc ? metalc6 LB O1B ADP . b ADP 1601 1_555 MB BE BEF . b BEF 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? 
metalc ? metalc7 VB O1B ADP . h ADP 1601 1_555 WB BE BEF . h BEF 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? 
metalc ? metalc8 ZB O1B ADP . k ADP 2101 1_555 AC BE BEF . k BEF 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? 
metalc ? metalc9 BC O1B ADP . l ADP 1601 1_555 CC BE BEF . l BEF 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? 
metalc ? metalc10 IC O1B ADP . p ADP 1601 1_555 JC BE BEF . p BEF 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? 
#
_chem_comp.formula           'Be F3 -1' 
_chem_comp.formula_weight    66.007 
_chem_comp.id                BEF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BERYLLIUM TRIFLUORIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
BE F1 BEF sing 114 n n 
BE F2 BEF sing 115 n n 
BE F3 BEF sing 116 n n 
#
_atom_sites.entry_id                     4V81 
_atom_sites.fract_transf_matrix[1][1]    0.006285 
_atom_sites.fract_transf_matrix[1][2]    -0.00346 
_atom_sites.fract_transf_matrix[1][3]    -0.000943 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007023 
_atom_sites.fract_transf_matrix[2][3]    -0.000073 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003775 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
GA 9 ADP A 1 601 756 ADP ADP . 
HA 10 BEF A 1 602 757 BEF BEF . 
IA 9 ADP B 1 601 756 ADP ADP . 
JA 10 BEF B 1 602 757 BEF BEF . 
KA 9 ADP C 1 1101 756 ADP ADP . 
LA 10 BEF C 1 1102 757 BEF BEF . 
MA 9 ADP D 1 601 756 ADP ADP . 
NA 10 BEF D 1 602 757 BEF BEF . 
OA 9 ADP E 1 601 756 ADP ADP . 
PA 10 BEF E 1 602 757 BEF BEF . 
QA 9 ADP F 1 601 756 ADP ADP . 
RA 10 BEF F 1 602 757 BEF BEF . 
SA 9 ADP G 1 601 756 ADP ADP . 
TA 10 BEF G 1 602 757 BEF BEF . 
UA 9 ADP H 1 601 756 ADP ADP . 
VA 10 BEF H 1 602 757 BEF BEF . 
WA 11 SO4 I 1 600 600 SO4 SO4 . 
XA 9 ADP J 1 601 756 ADP ADP . 
YA 10 BEF J 1 602 757 BEF BEF . 
ZA 11 SO4 K 1 1101 600 SO4 SO4 . 
AB 9 ADP L 1 601 756 ADP ADP . 
BB 10 BEF L 1 602 757 BEF BEF . 
CB 9 ADP M 1 601 756 ADP ADP . 
DB 10 BEF M 1 602 757 BEF BEF . 
EB 9 ADP N 1 601 756 ADP ADP . 
FB 10 BEF N 1 602 757 BEF BEF . 
GB 11 SO4 O 1 600 600 SO4 SO4 . 
HB 9 ADP P 1 601 756 ADP ADP . 
IB 10 BEF P 1 602 757 BEF BEF . 
JB 9 ADP a 1 1601 1756 ADP ADP . 
KB 10 BEF a 1 1602 1757 BEF BEF . 
LB 9 ADP b 1 1601 1756 ADP ADP . 
MB 10 BEF b 1 1602 1757 BEF BEF . 
NB 11 SO4 c 1 2101 1600 SO4 SO4 . 
OB 11 SO4 d 1 1600 1600 SO4 SO4 . 
PB 9 ADP e 1 1601 1756 ADP ADP . 
QB 10 BEF e 1 1602 1757 BEF BEF . 
RB 9 ADP f 1 1601 1756 ADP ADP . 
SB 10 BEF f 1 1602 1757 BEF BEF . 
TB 9 ADP g 1 1601 1756 ADP ADP . 
UB 10 BEF g 1 1602 1757 BEF BEF . 
VB 9 ADP h 1 1601 1756 ADP ADP . 
WB 10 BEF h 1 1602 1757 BEF BEF . 
XB 11 SO4 i 1 1600 1600 SO4 SO4 . 
YB 11 SO4 j 1 1600 1600 SO4 SO4 . 
ZB 9 ADP k 1 2101 1756 ADP ADP . 
AC 10 BEF k 1 2102 1757 BEF BEF . 
BC 9 ADP l 1 1601 1756 ADP ADP . 
CC 10 BEF l 1 1602 1757 BEF BEF . 
DC 9 ADP m 1 1601 1756 ADP ADP . 
EC 10 BEF m 1 1602 1757 BEF BEF . 
FC 9 ADP n 1 1601 1756 ADP ADP . 
GC 10 BEF n 1 1602 1757 BEF BEF . 
HC 11 SO4 o 1 1600 1600 SO4 SO4 . 
IC 9 ADP p 1 1601 1756 ADP ADP . 
JC 10 BEF p 1 1602 1757 BEF BEF . 
KC 12 HOH B 1 800 800 HOH HOH . 
LC 12 HOH E 1 800 800 HOH HOH . 
MC 12 HOH G 1 800 800 HOH HOH . 
NC 12 HOH M 1 800 800 HOH HOH . 
OC 12 HOH e 1 1800 1800 HOH HOH . 
PC 12 HOH g 1 1800 1800 HOH HOH . 
QC 12 HOH m 1 1800 1800 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 BE BE BEF . . . YA 10 151.938 21.714 104.258 1 240.18 ? BE BEF 602 J 1 
HETATM 2 F F1 BEF . . . YA 10 151.177 22.674 104.862 1 246.52 ? F1 BEF 602 J 1 
HETATM 3 F F2 BEF . . . YA 10 153.225 22.159 104.148 1 236.55 ? F2 BEF 602 J 1 
HETATM 4 F F3 BEF . . . YA 10 151.893 20.575 105.01 1 235.51 ? F3 BEF 602 J 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    447 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           4 
#