data_4W4Z # _model_server_result.job_id AO1eVGbURA9YhA7YrstAwg _model_server_result.datetime_utc '2024-11-22 11:36:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4w4z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":304}' # _entry.id 4W4Z # _exptl.entry_id 4W4Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4W4Z _cell.length_a 37.22 _cell.length_b 127.19 _cell.length_c 84.599 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4W4Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,J,K,L,M,DA,HA 1 1 B,F,N,O,P,Q,R,S,EA,IA 2 1 C,G,T,U,V,W,FA,JA 3 1 D,H,X,Y,Z,AA,BA,CA,GA,KA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 L N N ? 4 M N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 W N N ? 4 AA N N ? 4 BA N N ? 4 CA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 73 1_555 A SG CYS 166 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf2 A SG CYS 83 A CYS 108 1_555 A SG CYS 93 A CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 B SG CYS 48 B CYS 73 1_555 B SG CYS 166 B CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf4 B SG CYS 83 B CYS 108 1_555 B SG CYS 93 B CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf5 C SG CYS 48 C CYS 73 1_555 C SG CYS 166 C CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf6 C SG CYS 83 C CYS 108 1_555 C SG CYS 93 C CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf7 D SG CYS 48 D CYS 73 1_555 D SG CYS 166 D CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 D SG CYS 83 D CYS 108 1_555 D SG CYS 93 D CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf9 E SG CYS 4 E CYS 4 1_555 E SG CYS 12 E CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf10 F SG CYS 4 F CYS 4 1_555 F SG CYS 12 F CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf11 G SG CYS 4 G CYS 4 1_555 G SG CYS 12 G CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf12 H SG CYS 4 H CYS 4 1_555 H SG CYS 12 H CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 E C ARG 7 E ARG 7 1_555 E N BAL 8 E BAL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 E C BAL 8 E BAL 8 1_555 E N SER 9 E SER 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale3 E C CYS 12 E CYS 12 1_555 E N NH2 13 E NH2 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 F C ARG 7 F ARG 7 1_555 F N BAL 8 F BAL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 F C BAL 8 F BAL 8 1_555 F N SER 9 F SER 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale6 F C CYS 12 F CYS 12 1_555 F N NH2 13 F NH2 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 G C ARG 7 G ARG 7 1_555 G N BAL 8 G BAL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 G C BAL 8 G BAL 8 1_555 G N SER 9 G SER 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale9 G C CYS 12 G CYS 12 1_555 G N NH2 13 G NH2 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale10 H C ARG 7 H ARG 7 1_555 H N BAL 8 H BAL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale11 H C BAL 8 H BAL 8 1_555 H N SER 9 H SER 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale12 H C CYS 12 H CYS 12 1_555 H N NH2 13 H NH2 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 141 n n C1 C2 GOL sing 142 n n C1 H11 GOL sing 143 n n C1 H12 GOL sing 144 n n O1 HO1 GOL sing 145 n n C2 O2 GOL sing 146 n n C2 C3 GOL sing 147 n n C2 H2 GOL sing 148 n n O2 HO2 GOL sing 149 n n C3 O3 GOL sing 150 n n C3 H31 GOL sing 151 n n C3 H32 GOL sing 152 n n O3 HO3 GOL sing 153 n n # _atom_sites.entry_id 4W4Z _atom_sites.fract_transf_matrix[1][1] 0.026867 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 HEZ A 1 301 4 HEZ HEZ . J 3 HEZ A 1 302 6 HEZ HEZ . K 4 GOL A 1 303 2 GOL GOL . L 4 GOL A 1 304 6 GOL GOL . M 4 GOL A 1 305 13 GOL GOL . N 3 HEZ B 1 301 1 HEZ HEZ . O 3 HEZ B 1 302 2 HEZ HEZ . P 4 GOL B 1 303 5 GOL GOL . Q 4 GOL B 1 304 7 GOL GOL . R 4 GOL B 1 305 8 GOL GOL . S 4 GOL B 1 306 10 GOL GOL . T 4 GOL C 1 301 3 GOL GOL . U 4 GOL C 1 302 9 GOL GOL . V 4 GOL C 1 303 11 GOL GOL . W 4 GOL C 1 304 14 GOL GOL . X 3 HEZ D 1 301 3 HEZ HEZ . Y 3 HEZ D 1 302 5 HEZ HEZ . Z 3 HEZ D 1 303 7 HEZ HEZ . AA 4 GOL D 1 304 1 GOL GOL . BA 4 GOL D 1 305 12 GOL GOL . CA 4 GOL H 1 101 4 GOL GOL . DA 5 HOH A 1 401 165 HOH HOH . DA 5 HOH A 2 402 169 HOH HOH . DA 5 HOH A 3 403 45 HOH HOH . DA 5 HOH A 4 404 132 HOH HOH . DA 5 HOH A 5 405 142 HOH HOH . DA 5 HOH A 6 406 155 HOH HOH . DA 5 HOH A 7 407 164 HOH HOH . DA 5 HOH A 8 408 2 HOH HOH . DA 5 HOH A 9 409 9 HOH HOH . DA 5 HOH A 10 410 12 HOH HOH . DA 5 HOH A 11 411 14 HOH HOH . DA 5 HOH A 12 412 15 HOH HOH . DA 5 HOH A 13 413 22 HOH HOH . DA 5 HOH A 14 414 32 HOH HOH . DA 5 HOH A 15 415 46 HOH HOH . DA 5 HOH A 16 416 47 HOH HOH . DA 5 HOH A 17 417 57 HOH HOH . DA 5 HOH A 18 418 62 HOH HOH . DA 5 HOH A 19 419 71 HOH HOH . DA 5 HOH A 20 420 79 HOH HOH . DA 5 HOH A 21 421 82 HOH HOH . DA 5 HOH A 22 422 83 HOH HOH . DA 5 HOH A 23 423 88 HOH HOH . DA 5 HOH A 24 424 89 HOH HOH . DA 5 HOH A 25 425 90 HOH HOH . DA 5 HOH A 26 426 91 HOH HOH . DA 5 HOH A 27 427 92 HOH HOH . DA 5 HOH A 28 428 96 HOH HOH . DA 5 HOH A 29 429 116 HOH HOH . DA 5 HOH A 30 430 122 HOH HOH . DA 5 HOH A 31 431 130 HOH HOH . DA 5 HOH A 32 432 133 HOH HOH . DA 5 HOH A 33 433 134 HOH HOH . DA 5 HOH A 34 434 135 HOH HOH . DA 5 HOH A 35 435 153 HOH HOH . EA 5 HOH B 1 401 102 HOH HOH . EA 5 HOH B 2 402 118 HOH HOH . EA 5 HOH B 3 403 170 HOH HOH . EA 5 HOH B 4 404 64 HOH HOH . EA 5 HOH B 5 405 103 HOH HOH . EA 5 HOH B 6 406 123 HOH HOH . EA 5 HOH B 7 407 23 HOH HOH . EA 5 HOH B 8 408 168 HOH HOH . EA 5 HOH B 9 409 3 HOH HOH . EA 5 HOH B 10 410 119 HOH HOH . EA 5 HOH B 11 411 5 HOH HOH . EA 5 HOH B 12 412 11 HOH HOH . EA 5 HOH B 13 413 26 HOH HOH . EA 5 HOH B 14 414 30 HOH HOH . EA 5 HOH B 15 415 33 HOH HOH . EA 5 HOH B 16 416 34 HOH HOH . EA 5 HOH B 17 417 39 HOH HOH . EA 5 HOH B 18 418 41 HOH HOH . EA 5 HOH B 19 419 49 HOH HOH . EA 5 HOH B 20 420 53 HOH HOH . EA 5 HOH B 21 421 54 HOH HOH . EA 5 HOH B 22 422 58 HOH HOH . EA 5 HOH B 23 423 61 HOH HOH . EA 5 HOH B 24 424 67 HOH HOH . EA 5 HOH B 25 425 72 HOH HOH . EA 5 HOH B 26 426 77 HOH HOH . EA 5 HOH B 27 427 99 HOH HOH . EA 5 HOH B 28 428 105 HOH HOH . EA 5 HOH B 29 429 106 HOH HOH . EA 5 HOH B 30 430 120 HOH HOH . EA 5 HOH B 31 431 121 HOH HOH . EA 5 HOH B 32 432 124 HOH HOH . EA 5 HOH B 33 433 131 HOH HOH . EA 5 HOH B 34 434 140 HOH HOH . EA 5 HOH B 35 435 143 HOH HOH . EA 5 HOH B 36 436 146 HOH HOH . EA 5 HOH B 37 437 148 HOH HOH . EA 5 HOH B 38 438 157 HOH HOH . EA 5 HOH B 39 439 160 HOH HOH . EA 5 HOH B 40 440 171 HOH HOH . FA 5 HOH C 1 401 101 HOH HOH . FA 5 HOH C 2 402 37 HOH HOH . FA 5 HOH C 3 403 25 HOH HOH . FA 5 HOH C 4 404 76 HOH HOH . FA 5 HOH C 5 405 63 HOH HOH . FA 5 HOH C 6 406 151 HOH HOH . FA 5 HOH C 7 407 98 HOH HOH . FA 5 HOH C 8 408 149 HOH HOH . FA 5 HOH C 9 409 152 HOH HOH . FA 5 HOH C 10 410 29 HOH HOH . FA 5 HOH C 11 411 35 HOH HOH . FA 5 HOH C 12 412 36 HOH HOH . FA 5 HOH C 13 413 40 HOH HOH . FA 5 HOH C 14 414 44 HOH HOH . FA 5 HOH C 15 415 48 HOH HOH . FA 5 HOH C 16 416 50 HOH HOH . FA 5 HOH C 17 417 60 HOH HOH . FA 5 HOH C 18 418 75 HOH HOH . FA 5 HOH C 19 419 85 HOH HOH . FA 5 HOH C 20 420 86 HOH HOH . FA 5 HOH C 21 421 94 HOH HOH . FA 5 HOH C 22 422 95 HOH HOH . FA 5 HOH C 23 423 97 HOH HOH . FA 5 HOH C 24 424 100 HOH HOH . FA 5 HOH C 25 425 104 HOH HOH . FA 5 HOH C 26 426 107 HOH HOH . FA 5 HOH C 27 427 108 HOH HOH . FA 5 HOH C 28 428 144 HOH HOH . FA 5 HOH C 29 429 145 HOH HOH . FA 5 HOH C 30 430 147 HOH HOH . FA 5 HOH C 31 431 156 HOH HOH . FA 5 HOH C 32 432 167 HOH HOH . GA 5 HOH D 1 401 136 HOH HOH . GA 5 HOH D 2 402 43 HOH HOH . GA 5 HOH D 3 403 112 HOH HOH . GA 5 HOH D 4 404 166 HOH HOH . GA 5 HOH D 5 405 114 HOH HOH . GA 5 HOH D 6 406 138 HOH HOH . GA 5 HOH D 7 407 21 HOH HOH . GA 5 HOH D 8 408 28 HOH HOH . GA 5 HOH D 9 409 31 HOH HOH . GA 5 HOH D 10 410 42 HOH HOH . GA 5 HOH D 11 411 55 HOH HOH . GA 5 HOH D 12 412 56 HOH HOH . GA 5 HOH D 13 413 68 HOH HOH . GA 5 HOH D 14 414 70 HOH HOH . GA 5 HOH D 15 415 73 HOH HOH . GA 5 HOH D 16 416 74 HOH HOH . GA 5 HOH D 17 417 80 HOH HOH . GA 5 HOH D 18 418 81 HOH HOH . GA 5 HOH D 19 419 84 HOH HOH . GA 5 HOH D 20 420 87 HOH HOH . GA 5 HOH D 21 421 93 HOH HOH . GA 5 HOH D 22 422 110 HOH HOH . GA 5 HOH D 23 423 111 HOH HOH . GA 5 HOH D 24 424 113 HOH HOH . GA 5 HOH D 25 425 115 HOH HOH . GA 5 HOH D 26 426 128 HOH HOH . GA 5 HOH D 27 427 129 HOH HOH . GA 5 HOH D 28 428 139 HOH HOH . GA 5 HOH D 29 429 141 HOH HOH . GA 5 HOH D 30 430 154 HOH HOH . GA 5 HOH D 31 431 158 HOH HOH . GA 5 HOH D 32 432 159 HOH HOH . GA 5 HOH D 33 433 162 HOH HOH . GA 5 HOH D 34 434 163 HOH HOH . HA 5 HOH E 1 101 125 HOH HOH . HA 5 HOH E 2 102 126 HOH HOH . HA 5 HOH E 3 103 127 HOH HOH . HA 5 HOH E 4 104 150 HOH HOH . IA 5 HOH F 1 101 51 HOH HOH . IA 5 HOH F 2 102 78 HOH HOH . IA 5 HOH F 3 103 161 HOH HOH . JA 5 HOH G 1 101 137 HOH HOH . KA 5 HOH H 1 201 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 4 -15.509 -6.834 10.384 1 28.71 ? C1 GOL 304 A 1 HETATM 2 O O1 GOL . . . L 4 -16.749 -6.857 9.651 1 28.12 ? O1 GOL 304 A 1 HETATM 3 C C2 GOL . . . L 4 -15.581 -7.347 11.826 1 27.07 ? C2 GOL 304 A 1 HETATM 4 O O2 GOL . . . L 4 -16.726 -6.831 12.508 1 25.63 ? O2 GOL 304 A 1 HETATM 5 C C3 GOL . . . L 4 -15.596 -8.883 11.906 1 27.95 ? C3 GOL 304 A 1 HETATM 6 O O3 GOL . . . L 4 -14.294 -9.411 11.596 1 27.76 ? O3 GOL 304 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 6 #