data_4W50
#
_model_server_result.job_id            8dTJcWLyxT2PP0GznpqW1g 
_model_server_result.datetime_utc      '2024-11-04 22:43:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4w50 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":302}' 
#
_entry.id    4W50 
#
_exptl.entry_id    4W50 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4W50 
_cell.length_a            36.27 
_cell.length_b            127.69 
_cell.length_c            84.569 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4W50 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I,J,K,L,S,W 1 1 
B,F,M,N,T,X 2 1 
C,G,O,P,U,Y 3 1 
D,H,Q,R,V,Z 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 N N N 
? 4 P N N 
? 4 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 48 A CYS 73 1_555 A SG CYS 166 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf2 A SG CYS 83 A CYS 108 1_555 A SG CYS 93 A CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf3 B SG CYS 48 B CYS 73 1_555 B SG CYS 166 B CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
disulf ? disulf4 B SG CYS 83 B CYS 108 1_555 B SG CYS 93 B CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf5 C SG CYS 48 C CYS 73 1_555 C SG CYS 166 C CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf6 C SG CYS 83 C CYS 108 1_555 C SG CYS 93 C CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf7 D SG CYS 48 D CYS 73 1_555 D SG CYS 166 D CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf8 D SG CYS 83 D CYS 108 1_555 D SG CYS 93 D CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf9 E SG CYS 4 E CYS 4 1_555 E SG CYS 12 E CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
disulf ? disulf10 F SG CYS 4 F CYS 4 1_555 F SG CYS 12 F CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
disulf ? disulf11 G SG CYS 4 G CYS 4 1_555 G SG CYS 12 G CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf12 H SG CYS 4 H CYS 4 1_555 H SG CYS 12 H CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 144 n n 
C1 C2 GOL sing 145 n n 
C1 H11 GOL sing 146 n n 
C1 H12 GOL sing 147 n n 
O1 HO1 GOL sing 148 n n 
C2 O2 GOL sing 149 n n 
C2 C3 GOL sing 150 n n 
C2 H2 GOL sing 151 n n 
O2 HO2 GOL sing 152 n n 
C3 O3 GOL sing 153 n n 
C3 H31 GOL sing 154 n n 
C3 H32 GOL sing 155 n n 
O3 HO3 GOL sing 156 n n 
#
_atom_sites.entry_id                     4W50 
_atom_sites.fract_transf_matrix[1][1]    0.027571 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007831 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011825 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 BU2 A 1 301 2 BU2 BU2 . 
J 4 GOL A 1 302 2 GOL GOL . 
K 4 GOL A 1 303 3 GOL GOL . 
L 4 GOL A 1 304 6 GOL GOL . 
M 3 BU2 B 1 301 1 BU2 BU2 . 
N 4 GOL B 1 302 1 GOL GOL . 
O 3 BU2 C 1 301 3 BU2 BU2 . 
P 4 GOL C 1 302 5 GOL GOL . 
Q 3 BU2 D 1 301 4 BU2 BU2 . 
R 4 GOL D 1 302 4 GOL GOL . 
S 5 HOH A 1 401 136 HOH HOH . 
S 5 HOH A 2 402 114 HOH HOH . 
S 5 HOH A 3 403 63 HOH HOH . 
S 5 HOH A 4 404 126 HOH HOH . 
S 5 HOH A 5 405 112 HOH HOH . 
S 5 HOH A 6 406 187 HOH HOH . 
S 5 HOH A 7 407 56 HOH HOH . 
S 5 HOH A 8 408 81 HOH HOH . 
S 5 HOH A 9 409 174 HOH HOH . 
S 5 HOH A 10 410 1 HOH HOH . 
S 5 HOH A 11 411 4 HOH HOH . 
S 5 HOH A 12 412 7 HOH HOH . 
S 5 HOH A 13 413 8 HOH HOH . 
S 5 HOH A 14 414 9 HOH HOH . 
S 5 HOH A 15 415 10 HOH HOH . 
S 5 HOH A 16 416 11 HOH HOH . 
S 5 HOH A 17 417 13 HOH HOH . 
S 5 HOH A 18 418 15 HOH HOH . 
S 5 HOH A 19 419 19 HOH HOH . 
S 5 HOH A 20 420 20 HOH HOH . 
S 5 HOH A 21 421 23 HOH HOH . 
S 5 HOH A 22 422 25 HOH HOH . 
S 5 HOH A 23 423 27 HOH HOH . 
S 5 HOH A 24 424 28 HOH HOH . 
S 5 HOH A 25 425 34 HOH HOH . 
S 5 HOH A 26 426 35 HOH HOH . 
S 5 HOH A 27 427 39 HOH HOH . 
S 5 HOH A 28 428 42 HOH HOH . 
S 5 HOH A 29 429 43 HOH HOH . 
S 5 HOH A 30 430 45 HOH HOH . 
S 5 HOH A 31 431 47 HOH HOH . 
S 5 HOH A 32 432 57 HOH HOH . 
S 5 HOH A 33 433 59 HOH HOH . 
S 5 HOH A 34 434 65 HOH HOH . 
S 5 HOH A 35 435 69 HOH HOH . 
S 5 HOH A 36 436 72 HOH HOH . 
S 5 HOH A 37 437 82 HOH HOH . 
S 5 HOH A 38 438 89 HOH HOH . 
S 5 HOH A 39 439 98 HOH HOH . 
S 5 HOH A 40 440 113 HOH HOH . 
S 5 HOH A 41 441 122 HOH HOH . 
S 5 HOH A 42 442 127 HOH HOH . 
S 5 HOH A 43 443 135 HOH HOH . 
S 5 HOH A 44 444 144 HOH HOH . 
S 5 HOH A 45 445 157 HOH HOH . 
S 5 HOH A 46 446 175 HOH HOH . 
S 5 HOH A 47 447 200 HOH HOH . 
S 5 HOH A 48 448 202 HOH HOH . 
T 5 HOH B 1 401 111 HOH HOH . 
T 5 HOH B 2 402 79 HOH HOH . 
T 5 HOH B 3 403 147 HOH HOH . 
T 5 HOH B 4 404 3 HOH HOH . 
T 5 HOH B 5 405 168 HOH HOH . 
T 5 HOH B 6 406 84 HOH HOH . 
T 5 HOH B 7 407 165 HOH HOH . 
T 5 HOH B 8 408 163 HOH HOH . 
T 5 HOH B 9 409 67 HOH HOH . 
T 5 HOH B 10 410 61 HOH HOH . 
T 5 HOH B 11 411 171 HOH HOH . 
T 5 HOH B 12 412 14 HOH HOH . 
T 5 HOH B 13 413 16 HOH HOH . 
T 5 HOH B 14 414 22 HOH HOH . 
T 5 HOH B 15 415 26 HOH HOH . 
T 5 HOH B 16 416 40 HOH HOH . 
T 5 HOH B 17 417 51 HOH HOH . 
T 5 HOH B 18 418 53 HOH HOH . 
T 5 HOH B 19 419 64 HOH HOH . 
T 5 HOH B 20 420 71 HOH HOH . 
T 5 HOH B 21 421 73 HOH HOH . 
T 5 HOH B 22 422 74 HOH HOH . 
T 5 HOH B 23 423 78 HOH HOH . 
T 5 HOH B 24 424 83 HOH HOH . 
T 5 HOH B 25 425 87 HOH HOH . 
T 5 HOH B 26 426 90 HOH HOH . 
T 5 HOH B 27 427 93 HOH HOH . 
T 5 HOH B 28 428 94 HOH HOH . 
T 5 HOH B 29 429 96 HOH HOH . 
T 5 HOH B 30 430 101 HOH HOH . 
T 5 HOH B 31 431 102 HOH HOH . 
T 5 HOH B 32 432 105 HOH HOH . 
T 5 HOH B 33 433 107 HOH HOH . 
T 5 HOH B 34 434 109 HOH HOH . 
T 5 HOH B 35 435 115 HOH HOH . 
T 5 HOH B 36 436 116 HOH HOH . 
T 5 HOH B 37 437 120 HOH HOH . 
T 5 HOH B 38 438 125 HOH HOH . 
T 5 HOH B 39 439 130 HOH HOH . 
T 5 HOH B 40 440 134 HOH HOH . 
T 5 HOH B 41 441 138 HOH HOH . 
T 5 HOH B 42 442 164 HOH HOH . 
T 5 HOH B 43 443 167 HOH HOH . 
T 5 HOH B 44 444 169 HOH HOH . 
T 5 HOH B 45 445 176 HOH HOH . 
T 5 HOH B 46 446 177 HOH HOH . 
T 5 HOH B 47 447 186 HOH HOH . 
T 5 HOH B 48 448 196 HOH HOH . 
T 5 HOH B 49 449 197 HOH HOH . 
T 5 HOH B 50 450 199 HOH HOH . 
T 5 HOH B 51 451 203 HOH HOH . 
T 5 HOH B 52 452 204 HOH HOH . 
U 5 HOH C 1 401 162 HOH HOH . 
U 5 HOH C 2 402 121 HOH HOH . 
U 5 HOH C 3 403 85 HOH HOH . 
U 5 HOH C 4 404 110 HOH HOH . 
U 5 HOH C 5 405 194 HOH HOH . 
U 5 HOH C 6 406 32 HOH HOH . 
U 5 HOH C 7 407 97 HOH HOH . 
U 5 HOH C 8 408 188 HOH HOH . 
U 5 HOH C 9 409 198 HOH HOH . 
U 5 HOH C 10 410 159 HOH HOH . 
U 5 HOH C 11 411 180 HOH HOH . 
U 5 HOH C 12 412 17 HOH HOH . 
U 5 HOH C 13 413 21 HOH HOH . 
U 5 HOH C 14 414 29 HOH HOH . 
U 5 HOH C 15 415 30 HOH HOH . 
U 5 HOH C 16 416 38 HOH HOH . 
U 5 HOH C 17 417 41 HOH HOH . 
U 5 HOH C 18 418 50 HOH HOH . 
U 5 HOH C 19 419 62 HOH HOH . 
U 5 HOH C 20 420 88 HOH HOH . 
U 5 HOH C 21 421 104 HOH HOH . 
U 5 HOH C 22 422 106 HOH HOH . 
U 5 HOH C 23 423 117 HOH HOH . 
U 5 HOH C 24 424 140 HOH HOH . 
U 5 HOH C 25 425 141 HOH HOH . 
U 5 HOH C 26 426 142 HOH HOH . 
U 5 HOH C 27 427 156 HOH HOH . 
U 5 HOH C 28 428 160 HOH HOH . 
U 5 HOH C 29 429 161 HOH HOH . 
U 5 HOH C 30 430 181 HOH HOH . 
U 5 HOH C 31 431 192 HOH HOH . 
U 5 HOH C 32 432 193 HOH HOH . 
U 5 HOH C 33 433 195 HOH HOH . 
V 5 HOH D 1 401 58 HOH HOH . 
V 5 HOH D 2 402 86 HOH HOH . 
V 5 HOH D 3 403 68 HOH HOH . 
V 5 HOH D 4 404 123 HOH HOH . 
V 5 HOH D 5 405 190 HOH HOH . 
V 5 HOH D 6 406 149 HOH HOH . 
V 5 HOH D 7 407 108 HOH HOH . 
V 5 HOH D 8 408 189 HOH HOH . 
V 5 HOH D 9 409 44 HOH HOH . 
V 5 HOH D 10 410 2 HOH HOH . 
V 5 HOH D 11 411 24 HOH HOH . 
V 5 HOH D 12 412 46 HOH HOH . 
V 5 HOH D 13 413 52 HOH HOH . 
V 5 HOH D 14 414 55 HOH HOH . 
V 5 HOH D 15 415 66 HOH HOH . 
V 5 HOH D 16 416 70 HOH HOH . 
V 5 HOH D 17 417 76 HOH HOH . 
V 5 HOH D 18 418 77 HOH HOH . 
V 5 HOH D 19 419 80 HOH HOH . 
V 5 HOH D 20 420 92 HOH HOH . 
V 5 HOH D 21 421 100 HOH HOH . 
V 5 HOH D 22 422 103 HOH HOH . 
V 5 HOH D 23 423 133 HOH HOH . 
V 5 HOH D 24 424 139 HOH HOH . 
V 5 HOH D 25 425 148 HOH HOH . 
V 5 HOH D 26 426 151 HOH HOH . 
V 5 HOH D 27 427 153 HOH HOH . 
V 5 HOH D 28 428 158 HOH HOH . 
V 5 HOH D 29 429 170 HOH HOH . 
V 5 HOH D 30 430 173 HOH HOH . 
V 5 HOH D 31 431 191 HOH HOH . 
W 5 HOH E 1 101 182 HOH HOH . 
W 5 HOH E 2 102 31 HOH HOH . 
W 5 HOH E 3 103 48 HOH HOH . 
W 5 HOH E 4 104 185 HOH HOH . 
X 5 HOH F 1 101 60 HOH HOH . 
X 5 HOH F 2 102 124 HOH HOH . 
X 5 HOH F 3 103 129 HOH HOH . 
X 5 HOH F 4 104 183 HOH HOH . 
X 5 HOH F 5 105 201 HOH HOH . 
Y 5 HOH G 1 101 119 HOH HOH . 
Y 5 HOH G 2 102 166 HOH HOH . 
Z 5 HOH H 1 101 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . P 4 4.68 -37.411 45.008 1 70.49 ? C1 GOL 302 C 1 
HETATM 2 O O1 GOL . . . P 4 5.546 -38.234 44.216 1 68.06 ? O1 GOL 302 C 1 
HETATM 3 C C2 GOL . . . P 4 4.294 -38.174 46.273 1 72.03 ? C2 GOL 302 C 1 
HETATM 4 O O2 GOL . . . P 4 4.213 -37.223 47.327 1 69.15 ? O2 GOL 302 C 1 
HETATM 5 C C3 GOL . . . P 4 2.973 -38.945 46.118 1 74.11 ? C3 GOL 302 C 1 
HETATM 6 O O3 GOL . . . P 4 1.937 -38.403 46.951 1 75.92 ? O3 GOL 302 C 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#