data_4W52 # _model_server_result.job_id VZlqSgGVGcFUaS99pSu1WQ _model_server_result.datetime_utc '2024-11-21 21:53:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4w52 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 4W52 # _exptl.entry_id 4W52 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.112 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZENE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4W52 _cell.length_a 60.35 _cell.length_b 60.35 _cell.length_c 96.61 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4W52 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H6' _chem_comp.formula_weight 78.112 _chem_comp.id BNZ _chem_comp.mon_nstd_flag . _chem_comp.name BENZENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BNZ doub 70 n y C1 C6 BNZ sing 71 n y C1 H1 BNZ sing 72 n n C2 C3 BNZ sing 73 n y C2 H2 BNZ sing 74 n n C3 C4 BNZ doub 75 n y C3 H3 BNZ sing 76 n n C4 C5 BNZ sing 77 n y C4 H4 BNZ sing 78 n n C5 C6 BNZ doub 79 n y C5 H5 BNZ sing 80 n n C6 H6 BNZ sing 81 n n # _atom_sites.entry_id 4W52 _atom_sites.fract_transf_matrix[1][1] 0.01657 _atom_sites.fract_transf_matrix[1][2] 0.009567 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019133 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BNZ A 1 200 200 BNZ DRG . C 3 EPE A 1 201 201 EPE EPE . D 4 HOH A 1 301 121 HOH HOH . D 4 HOH A 2 302 2 HOH HOH . D 4 HOH A 3 303 7 HOH HOH . D 4 HOH A 4 304 110 HOH HOH . D 4 HOH A 5 305 44 HOH HOH . D 4 HOH A 6 306 142 HOH HOH . D 4 HOH A 7 307 36 HOH HOH . D 4 HOH A 8 308 59 HOH HOH . D 4 HOH A 9 309 58 HOH HOH . D 4 HOH A 10 310 71 HOH HOH . D 4 HOH A 11 311 104 HOH HOH . D 4 HOH A 12 312 99 HOH HOH . D 4 HOH A 13 313 127 HOH HOH . D 4 HOH A 14 314 24 HOH HOH . D 4 HOH A 15 315 42 HOH HOH . D 4 HOH A 16 316 15 HOH HOH . D 4 HOH A 17 317 51 HOH HOH . D 4 HOH A 18 318 67 HOH HOH . D 4 HOH A 19 319 93 HOH HOH . D 4 HOH A 20 320 97 HOH HOH . D 4 HOH A 21 321 50 HOH HOH . D 4 HOH A 22 322 35 HOH HOH . D 4 HOH A 23 323 73 HOH HOH . D 4 HOH A 24 324 74 HOH HOH . D 4 HOH A 25 325 69 HOH HOH . D 4 HOH A 26 326 128 HOH HOH . D 4 HOH A 27 327 72 HOH HOH . D 4 HOH A 28 328 1 HOH HOH . D 4 HOH A 29 329 101 HOH HOH . D 4 HOH A 30 330 146 HOH HOH . D 4 HOH A 31 331 17 HOH HOH . D 4 HOH A 32 332 5 HOH HOH . D 4 HOH A 33 333 16 HOH HOH . D 4 HOH A 34 334 141 HOH HOH . D 4 HOH A 35 335 3 HOH HOH . D 4 HOH A 36 336 46 HOH HOH . D 4 HOH A 37 337 45 HOH HOH . D 4 HOH A 38 338 140 HOH HOH . D 4 HOH A 39 339 19 HOH HOH . D 4 HOH A 40 340 25 HOH HOH . D 4 HOH A 41 341 84 HOH HOH . D 4 HOH A 42 342 49 HOH HOH . D 4 HOH A 43 343 145 HOH HOH . D 4 HOH A 44 344 43 HOH HOH . D 4 HOH A 45 345 47 HOH HOH . D 4 HOH A 46 346 70 HOH HOH . D 4 HOH A 47 347 6 HOH HOH . D 4 HOH A 48 348 30 HOH HOH . D 4 HOH A 49 349 18 HOH HOH . D 4 HOH A 50 350 83 HOH HOH . D 4 HOH A 51 351 4 HOH HOH . D 4 HOH A 52 352 135 HOH HOH . D 4 HOH A 53 353 94 HOH HOH . D 4 HOH A 54 354 86 HOH HOH . D 4 HOH A 55 355 98 HOH HOH . D 4 HOH A 56 356 48 HOH HOH . D 4 HOH A 57 357 95 HOH HOH . D 4 HOH A 58 358 79 HOH HOH . D 4 HOH A 59 359 144 HOH HOH . D 4 HOH A 60 360 82 HOH HOH . D 4 HOH A 61 361 138 HOH HOH . D 4 HOH A 62 362 8 HOH HOH . D 4 HOH A 63 363 137 HOH HOH . D 4 HOH A 64 364 87 HOH HOH . D 4 HOH A 65 365 9 HOH HOH . D 4 HOH A 66 366 10 HOH HOH . D 4 HOH A 67 367 11 HOH HOH . D 4 HOH A 68 368 12 HOH HOH . D 4 HOH A 69 369 13 HOH HOH . D 4 HOH A 70 370 14 HOH HOH . D 4 HOH A 71 371 20 HOH HOH . D 4 HOH A 72 372 21 HOH HOH . D 4 HOH A 73 373 22 HOH HOH . D 4 HOH A 74 374 23 HOH HOH . D 4 HOH A 75 375 26 HOH HOH . D 4 HOH A 76 376 27 HOH HOH . D 4 HOH A 77 377 28 HOH HOH . D 4 HOH A 78 378 29 HOH HOH . D 4 HOH A 79 379 31 HOH HOH . D 4 HOH A 80 380 32 HOH HOH . D 4 HOH A 81 381 33 HOH HOH . D 4 HOH A 82 382 34 HOH HOH . D 4 HOH A 83 383 37 HOH HOH . D 4 HOH A 84 384 38 HOH HOH . D 4 HOH A 85 385 39 HOH HOH . D 4 HOH A 86 386 40 HOH HOH . D 4 HOH A 87 387 41 HOH HOH . D 4 HOH A 88 388 52 HOH HOH . D 4 HOH A 89 389 53 HOH HOH . D 4 HOH A 90 390 54 HOH HOH . D 4 HOH A 91 391 55 HOH HOH . D 4 HOH A 92 392 56 HOH HOH . D 4 HOH A 93 393 57 HOH HOH . D 4 HOH A 94 394 60 HOH HOH . D 4 HOH A 95 395 61 HOH HOH . D 4 HOH A 96 396 62 HOH HOH . D 4 HOH A 97 397 63 HOH HOH . D 4 HOH A 98 398 64 HOH HOH . D 4 HOH A 99 399 65 HOH HOH . D 4 HOH A 100 400 66 HOH HOH . D 4 HOH A 101 401 68 HOH HOH . D 4 HOH A 102 402 75 HOH HOH . D 4 HOH A 103 403 76 HOH HOH . D 4 HOH A 104 404 77 HOH HOH . D 4 HOH A 105 405 78 HOH HOH . D 4 HOH A 106 406 80 HOH HOH . D 4 HOH A 107 407 81 HOH HOH . D 4 HOH A 108 408 85 HOH HOH . D 4 HOH A 109 409 88 HOH HOH . D 4 HOH A 110 410 89 HOH HOH . D 4 HOH A 111 411 90 HOH HOH . D 4 HOH A 112 412 91 HOH HOH . D 4 HOH A 113 413 92 HOH HOH . D 4 HOH A 114 414 96 HOH HOH . D 4 HOH A 115 415 100 HOH HOH . D 4 HOH A 116 416 102 HOH HOH . D 4 HOH A 117 417 103 HOH HOH . D 4 HOH A 118 418 105 HOH HOH . D 4 HOH A 119 419 106 HOH HOH . D 4 HOH A 120 420 107 HOH HOH . D 4 HOH A 121 421 108 HOH HOH . D 4 HOH A 122 422 109 HOH HOH . D 4 HOH A 123 423 111 HOH HOH . D 4 HOH A 124 424 112 HOH HOH . D 4 HOH A 125 425 113 HOH HOH . D 4 HOH A 126 426 114 HOH HOH . D 4 HOH A 127 427 115 HOH HOH . D 4 HOH A 128 428 116 HOH HOH . D 4 HOH A 129 429 117 HOH HOH . D 4 HOH A 130 430 118 HOH HOH . D 4 HOH A 131 431 119 HOH HOH . D 4 HOH A 132 432 120 HOH HOH . D 4 HOH A 133 433 122 HOH HOH . D 4 HOH A 134 434 123 HOH HOH . D 4 HOH A 135 435 124 HOH HOH . D 4 HOH A 136 436 125 HOH HOH . D 4 HOH A 137 437 126 HOH HOH . D 4 HOH A 138 438 129 HOH HOH . D 4 HOH A 139 439 130 HOH HOH . D 4 HOH A 140 440 131 HOH HOH . D 4 HOH A 141 441 132 HOH HOH . D 4 HOH A 142 442 133 HOH HOH . D 4 HOH A 143 443 134 HOH HOH . D 4 HOH A 144 444 136 HOH HOH . D 4 HOH A 145 445 139 HOH HOH . D 4 HOH A 146 446 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BNZ . . . B 2 -32.969 6.196 2.877 0.7 15.06 ? C1 BNZ 200 A 1 HETATM 2 C C2 BNZ . . . B 2 -32.945 7.046 3.973 0.7 12.84 ? C2 BNZ 200 A 1 HETATM 3 C C3 BNZ . . . B 2 -33.719 6.798 5.113 0.7 12.24 ? C3 BNZ 200 A 1 HETATM 4 C C4 BNZ . . . B 2 -34.54 5.68 5.143 0.7 13.09 ? C4 BNZ 200 A 1 HETATM 5 C C5 BNZ . . . B 2 -34.545 4.825 4.044 0.7 12.54 ? C5 BNZ 200 A 1 HETATM 6 C C6 BNZ . . . B 2 -33.787 5.069 2.915 0.7 14.23 ? C6 BNZ 200 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #