data_4W53 # _model_server_result.job_id OfHsMSTwoHXdxPhElFTK5Q _model_server_result.datetime_utc '2024-11-24 16:58:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4w53 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4W53 # _exptl.entry_id 4W53 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4W53 _cell.length_a 60.34 _cell.length_b 60.34 _cell.length_c 96.97 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4W53 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 4W53 _atom_sites.fract_transf_matrix[1][1] 0.016573 _atom_sites.fract_transf_matrix[1][2] 0.009568 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019137 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010312 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MBN A 1 200 200 MBN DRG . C 3 EPE A 1 201 201 EPE EPE . D 4 HOH A 1 301 99 HOH HOH . D 4 HOH A 2 302 60 HOH HOH . D 4 HOH A 3 303 2 HOH HOH . D 4 HOH A 4 304 44 HOH HOH . D 4 HOH A 5 305 94 HOH HOH . D 4 HOH A 6 306 1 HOH HOH . D 4 HOH A 7 307 39 HOH HOH . D 4 HOH A 8 308 37 HOH HOH . D 4 HOH A 9 309 58 HOH HOH . D 4 HOH A 10 310 22 HOH HOH . D 4 HOH A 11 311 48 HOH HOH . D 4 HOH A 12 312 41 HOH HOH . D 4 HOH A 13 313 66 HOH HOH . D 4 HOH A 14 314 38 HOH HOH . D 4 HOH A 15 315 15 HOH HOH . D 4 HOH A 16 316 29 HOH HOH . D 4 HOH A 17 317 73 HOH HOH . D 4 HOH A 18 318 67 HOH HOH . D 4 HOH A 19 319 91 HOH HOH . D 4 HOH A 20 320 69 HOH HOH . D 4 HOH A 21 321 40 HOH HOH . D 4 HOH A 22 322 77 HOH HOH . D 4 HOH A 23 323 106 HOH HOH . D 4 HOH A 24 324 4 HOH HOH . D 4 HOH A 25 325 18 HOH HOH . D 4 HOH A 26 326 56 HOH HOH . D 4 HOH A 27 327 97 HOH HOH . D 4 HOH A 28 328 68 HOH HOH . D 4 HOH A 29 329 17 HOH HOH . D 4 HOH A 30 330 130 HOH HOH . D 4 HOH A 31 331 89 HOH HOH . D 4 HOH A 32 332 6 HOH HOH . D 4 HOH A 33 333 23 HOH HOH . D 4 HOH A 34 334 83 HOH HOH . D 4 HOH A 35 335 136 HOH HOH . D 4 HOH A 36 336 100 HOH HOH . D 4 HOH A 37 337 28 HOH HOH . D 4 HOH A 38 338 88 HOH HOH . D 4 HOH A 39 339 35 HOH HOH . D 4 HOH A 40 340 126 HOH HOH . D 4 HOH A 41 341 5 HOH HOH . D 4 HOH A 42 342 36 HOH HOH . D 4 HOH A 43 343 111 HOH HOH . D 4 HOH A 44 344 31 HOH HOH . D 4 HOH A 45 345 129 HOH HOH . D 4 HOH A 46 346 26 HOH HOH . D 4 HOH A 47 347 45 HOH HOH . D 4 HOH A 48 348 46 HOH HOH . D 4 HOH A 49 349 7 HOH HOH . D 4 HOH A 50 350 90 HOH HOH . D 4 HOH A 51 351 47 HOH HOH . D 4 HOH A 52 352 135 HOH HOH . D 4 HOH A 53 353 131 HOH HOH . D 4 HOH A 54 354 3 HOH HOH . D 4 HOH A 55 355 105 HOH HOH . D 4 HOH A 56 356 13 HOH HOH . D 4 HOH A 57 357 139 HOH HOH . D 4 HOH A 58 358 137 HOH HOH . D 4 HOH A 59 359 14 HOH HOH . D 4 HOH A 60 360 70 HOH HOH . D 4 HOH A 61 361 95 HOH HOH . D 4 HOH A 62 362 27 HOH HOH . D 4 HOH A 63 363 81 HOH HOH . D 4 HOH A 64 364 138 HOH HOH . D 4 HOH A 65 365 142 HOH HOH . D 4 HOH A 66 366 96 HOH HOH . D 4 HOH A 67 367 8 HOH HOH . D 4 HOH A 68 368 9 HOH HOH . D 4 HOH A 69 369 10 HOH HOH . D 4 HOH A 70 370 11 HOH HOH . D 4 HOH A 71 371 12 HOH HOH . D 4 HOH A 72 372 16 HOH HOH . D 4 HOH A 73 373 19 HOH HOH . D 4 HOH A 74 374 20 HOH HOH . D 4 HOH A 75 375 21 HOH HOH . D 4 HOH A 76 376 24 HOH HOH . D 4 HOH A 77 377 25 HOH HOH . D 4 HOH A 78 378 30 HOH HOH . D 4 HOH A 79 379 32 HOH HOH . D 4 HOH A 80 380 33 HOH HOH . D 4 HOH A 81 381 34 HOH HOH . D 4 HOH A 82 382 42 HOH HOH . D 4 HOH A 83 383 43 HOH HOH . D 4 HOH A 84 384 49 HOH HOH . D 4 HOH A 85 385 50 HOH HOH . D 4 HOH A 86 386 51 HOH HOH . D 4 HOH A 87 387 52 HOH HOH . D 4 HOH A 88 388 53 HOH HOH . D 4 HOH A 89 389 54 HOH HOH . D 4 HOH A 90 390 55 HOH HOH . D 4 HOH A 91 391 57 HOH HOH . D 4 HOH A 92 392 59 HOH HOH . D 4 HOH A 93 393 61 HOH HOH . D 4 HOH A 94 394 62 HOH HOH . D 4 HOH A 95 395 63 HOH HOH . D 4 HOH A 96 396 64 HOH HOH . D 4 HOH A 97 397 65 HOH HOH . D 4 HOH A 98 398 71 HOH HOH . D 4 HOH A 99 399 72 HOH HOH . D 4 HOH A 100 400 74 HOH HOH . D 4 HOH A 101 401 75 HOH HOH . D 4 HOH A 102 402 76 HOH HOH . D 4 HOH A 103 403 78 HOH HOH . D 4 HOH A 104 404 79 HOH HOH . D 4 HOH A 105 405 80 HOH HOH . D 4 HOH A 106 406 82 HOH HOH . D 4 HOH A 107 407 84 HOH HOH . D 4 HOH A 108 408 85 HOH HOH . D 4 HOH A 109 409 86 HOH HOH . D 4 HOH A 110 410 87 HOH HOH . D 4 HOH A 111 411 92 HOH HOH . D 4 HOH A 112 412 93 HOH HOH . D 4 HOH A 113 413 98 HOH HOH . D 4 HOH A 114 414 101 HOH HOH . D 4 HOH A 115 415 102 HOH HOH . D 4 HOH A 116 416 103 HOH HOH . D 4 HOH A 117 417 104 HOH HOH . D 4 HOH A 118 418 107 HOH HOH . D 4 HOH A 119 419 108 HOH HOH . D 4 HOH A 120 420 109 HOH HOH . D 4 HOH A 121 421 110 HOH HOH . D 4 HOH A 122 422 112 HOH HOH . D 4 HOH A 123 423 113 HOH HOH . D 4 HOH A 124 424 114 HOH HOH . D 4 HOH A 125 425 115 HOH HOH . D 4 HOH A 126 426 116 HOH HOH . D 4 HOH A 127 427 117 HOH HOH . D 4 HOH A 128 428 118 HOH HOH . D 4 HOH A 129 429 119 HOH HOH . D 4 HOH A 130 430 120 HOH HOH . D 4 HOH A 131 431 121 HOH HOH . D 4 HOH A 132 432 122 HOH HOH . D 4 HOH A 133 433 123 HOH HOH . D 4 HOH A 134 434 124 HOH HOH . D 4 HOH A 135 435 125 HOH HOH . D 4 HOH A 136 436 127 HOH HOH . D 4 HOH A 137 437 128 HOH HOH . D 4 HOH A 138 438 132 HOH HOH . D 4 HOH A 139 439 133 HOH HOH . D 4 HOH A 140 440 134 HOH HOH . D 4 HOH A 141 441 140 HOH HOH . D 4 HOH A 142 442 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . C 3 -29.873 16.834 13.248 1 23.81 ? N1 EPE 201 A 1 HETATM 2 C C2 EPE . . . C 3 -28.575 17.201 12.656 1 20.59 ? C2 EPE 201 A 1 HETATM 3 C C3 EPE . . . C 3 -27.459 16.582 13.507 1 18.95 ? C3 EPE 201 A 1 HETATM 4 N N4 EPE . . . C 3 -27.642 15.152 13.765 1 17.31 ? N4 EPE 201 A 1 HETATM 5 C C5 EPE . . . C 3 -28.987 14.79 14.167 1 17.78 ? C5 EPE 201 A 1 HETATM 6 C C6 EPE . . . C 3 -29.978 15.371 13.162 1 20.15 ? C6 EPE 201 A 1 HETATM 7 C C7 EPE . . . C 3 -26.554 14.471 14.48 1 15.29 ? C7 EPE 201 A 1 HETATM 8 C C8 EPE . . . C 3 -26.691 14.477 15.998 1 18.41 ? C8 EPE 201 A 1 HETATM 9 O O8 EPE . . . C 3 -26.651 15.82 16.447 1 13.78 ? O8 EPE 201 A 1 HETATM 10 C C9 EPE . . . C 3 -31.018 17.424 12.526 1 24.59 ? C9 EPE 201 A 1 HETATM 11 C C10 EPE . . . C 3 -30.746 18.885 12.211 1 33.6 ? C10 EPE 201 A 1 HETATM 12 S S EPE . . . C 3 -32.349 19.671 11.938 1 52.47 ? S EPE 201 A 1 HETATM 13 O O1S EPE . . . C 3 -33.375 18.784 12.471 1 36.12 ? O1S EPE 201 A 1 HETATM 14 O O2S EPE . . . C 3 -32.505 19.841 10.491 1 62.42 ? O2S EPE 201 A 1 HETATM 15 O O3S EPE . . . C 3 -32.398 20.955 12.633 1 53.06 ? O3S EPE 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #