data_4W56 # _model_server_result.job_id LUlxCDf1zPk9ogMGCyTrsg _model_server_result.datetime_utc '2024-11-28 09:21:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4w56 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4W56 # _exptl.entry_id 4W56 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4W56 _cell.length_a 60.36 _cell.length_b 60.36 _cell.length_c 96.82 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4W56 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 107 n n N1 C6 EPE sing 108 n n N1 C9 EPE sing 109 n n C2 C3 EPE sing 110 n n C2 H21 EPE sing 111 n n C2 H22 EPE sing 112 n n C3 N4 EPE sing 113 n n C3 H31 EPE sing 114 n n C3 H32 EPE sing 115 n n N4 C5 EPE sing 116 n n N4 C7 EPE sing 117 n n C5 C6 EPE sing 118 n n C5 H51 EPE sing 119 n n C5 H52 EPE sing 120 n n C6 H61 EPE sing 121 n n C6 H62 EPE sing 122 n n C7 C8 EPE sing 123 n n C7 H71 EPE sing 124 n n C7 H72 EPE sing 125 n n C8 O8 EPE sing 126 n n C8 H81 EPE sing 127 n n C8 H82 EPE sing 128 n n O8 HO8 EPE sing 129 n n C9 C10 EPE sing 130 n n C9 H91 EPE sing 131 n n C9 H92 EPE sing 132 n n C10 S EPE sing 133 n n C10 H101 EPE sing 134 n n C10 H102 EPE sing 135 n n S O1S EPE doub 136 n n S O2S EPE doub 137 n n S O3S EPE sing 138 n n O3S HOS3 EPE sing 139 n n # _atom_sites.entry_id 4W56 _atom_sites.fract_transf_matrix[1][1] 0.016567 _atom_sites.fract_transf_matrix[1][2] 0.009565 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01913 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3GY A 1 200 200 3GY DRG . C 3 EPE A 1 201 201 EPE EPE . D 4 HOH A 1 301 152 HOH HOH . D 4 HOH A 2 302 72 HOH HOH . D 4 HOH A 3 303 118 HOH HOH . D 4 HOH A 4 304 159 HOH HOH . D 4 HOH A 5 305 83 HOH HOH . D 4 HOH A 6 306 91 HOH HOH . D 4 HOH A 7 307 36 HOH HOH . D 4 HOH A 8 308 156 HOH HOH . D 4 HOH A 9 309 45 HOH HOH . D 4 HOH A 10 310 58 HOH HOH . D 4 HOH A 11 311 130 HOH HOH . D 4 HOH A 12 312 107 HOH HOH . D 4 HOH A 13 313 142 HOH HOH . D 4 HOH A 14 314 33 HOH HOH . D 4 HOH A 15 315 106 HOH HOH . D 4 HOH A 16 316 110 HOH HOH . D 4 HOH A 17 317 2 HOH HOH . D 4 HOH A 18 318 59 HOH HOH . D 4 HOH A 19 319 54 HOH HOH . D 4 HOH A 20 320 135 HOH HOH . D 4 HOH A 21 321 64 HOH HOH . D 4 HOH A 22 322 27 HOH HOH . D 4 HOH A 23 323 55 HOH HOH . D 4 HOH A 24 324 67 HOH HOH . D 4 HOH A 25 325 127 HOH HOH . D 4 HOH A 26 326 66 HOH HOH . D 4 HOH A 27 327 13 HOH HOH . D 4 HOH A 28 328 38 HOH HOH . D 4 HOH A 29 329 101 HOH HOH . D 4 HOH A 30 330 100 HOH HOH . D 4 HOH A 31 331 42 HOH HOH . D 4 HOH A 32 332 37 HOH HOH . D 4 HOH A 33 333 138 HOH HOH . D 4 HOH A 34 334 56 HOH HOH . D 4 HOH A 35 335 5 HOH HOH . D 4 HOH A 36 336 26 HOH HOH . D 4 HOH A 37 337 1 HOH HOH . D 4 HOH A 38 338 3 HOH HOH . D 4 HOH A 39 339 155 HOH HOH . D 4 HOH A 40 340 12 HOH HOH . D 4 HOH A 41 341 6 HOH HOH . D 4 HOH A 42 342 124 HOH HOH . D 4 HOH A 43 343 20 HOH HOH . D 4 HOH A 44 344 120 HOH HOH . D 4 HOH A 45 345 21 HOH HOH . D 4 HOH A 46 346 28 HOH HOH . D 4 HOH A 47 347 133 HOH HOH . D 4 HOH A 48 348 115 HOH HOH . D 4 HOH A 49 349 153 HOH HOH . D 4 HOH A 50 350 40 HOH HOH . D 4 HOH A 51 351 41 HOH HOH . D 4 HOH A 52 352 154 HOH HOH . D 4 HOH A 53 353 34 HOH HOH . D 4 HOH A 54 354 39 HOH HOH . D 4 HOH A 55 355 121 HOH HOH . D 4 HOH A 56 356 157 HOH HOH . D 4 HOH A 57 357 17 HOH HOH . D 4 HOH A 58 358 111 HOH HOH . D 4 HOH A 59 359 126 HOH HOH . D 4 HOH A 60 360 143 HOH HOH . D 4 HOH A 61 361 92 HOH HOH . D 4 HOH A 62 362 93 HOH HOH . D 4 HOH A 63 363 97 HOH HOH . D 4 HOH A 64 364 57 HOH HOH . D 4 HOH A 65 365 4 HOH HOH . D 4 HOH A 66 366 75 HOH HOH . D 4 HOH A 67 367 94 HOH HOH . D 4 HOH A 68 368 29 HOH HOH . D 4 HOH A 69 369 78 HOH HOH . D 4 HOH A 70 370 15 HOH HOH . D 4 HOH A 71 371 47 HOH HOH . D 4 HOH A 72 372 149 HOH HOH . D 4 HOH A 73 373 79 HOH HOH . D 4 HOH A 74 374 82 HOH HOH . D 4 HOH A 75 375 103 HOH HOH . D 4 HOH A 76 376 81 HOH HOH . D 4 HOH A 77 377 146 HOH HOH . D 4 HOH A 78 378 80 HOH HOH . D 4 HOH A 79 379 119 HOH HOH . D 4 HOH A 80 380 147 HOH HOH . D 4 HOH A 81 381 7 HOH HOH . D 4 HOH A 82 382 8 HOH HOH . D 4 HOH A 83 383 9 HOH HOH . D 4 HOH A 84 384 10 HOH HOH . D 4 HOH A 85 385 11 HOH HOH . D 4 HOH A 86 386 14 HOH HOH . D 4 HOH A 87 387 16 HOH HOH . D 4 HOH A 88 388 18 HOH HOH . D 4 HOH A 89 389 19 HOH HOH . D 4 HOH A 90 390 22 HOH HOH . D 4 HOH A 91 391 23 HOH HOH . D 4 HOH A 92 392 24 HOH HOH . D 4 HOH A 93 393 25 HOH HOH . D 4 HOH A 94 394 30 HOH HOH . D 4 HOH A 95 395 31 HOH HOH . D 4 HOH A 96 396 32 HOH HOH . D 4 HOH A 97 397 35 HOH HOH . D 4 HOH A 98 398 43 HOH HOH . D 4 HOH A 99 399 44 HOH HOH . D 4 HOH A 100 400 46 HOH HOH . D 4 HOH A 101 401 48 HOH HOH . D 4 HOH A 102 402 49 HOH HOH . D 4 HOH A 103 403 50 HOH HOH . D 4 HOH A 104 404 51 HOH HOH . D 4 HOH A 105 405 52 HOH HOH . D 4 HOH A 106 406 53 HOH HOH . D 4 HOH A 107 407 60 HOH HOH . D 4 HOH A 108 408 61 HOH HOH . D 4 HOH A 109 409 62 HOH HOH . D 4 HOH A 110 410 63 HOH HOH . D 4 HOH A 111 411 65 HOH HOH . D 4 HOH A 112 412 68 HOH HOH . D 4 HOH A 113 413 69 HOH HOH . D 4 HOH A 114 414 70 HOH HOH . D 4 HOH A 115 415 71 HOH HOH . D 4 HOH A 116 416 73 HOH HOH . D 4 HOH A 117 417 74 HOH HOH . D 4 HOH A 118 418 76 HOH HOH . D 4 HOH A 119 419 77 HOH HOH . D 4 HOH A 120 420 84 HOH HOH . D 4 HOH A 121 421 85 HOH HOH . D 4 HOH A 122 422 86 HOH HOH . D 4 HOH A 123 423 87 HOH HOH . D 4 HOH A 124 424 88 HOH HOH . D 4 HOH A 125 425 89 HOH HOH . D 4 HOH A 126 426 90 HOH HOH . D 4 HOH A 127 427 95 HOH HOH . D 4 HOH A 128 428 96 HOH HOH . D 4 HOH A 129 429 98 HOH HOH . D 4 HOH A 130 430 99 HOH HOH . D 4 HOH A 131 431 102 HOH HOH . D 4 HOH A 132 432 104 HOH HOH . D 4 HOH A 133 433 105 HOH HOH . D 4 HOH A 134 434 108 HOH HOH . D 4 HOH A 135 435 109 HOH HOH . D 4 HOH A 136 436 112 HOH HOH . D 4 HOH A 137 437 113 HOH HOH . D 4 HOH A 138 438 114 HOH HOH . D 4 HOH A 139 439 116 HOH HOH . D 4 HOH A 140 440 117 HOH HOH . D 4 HOH A 141 441 122 HOH HOH . D 4 HOH A 142 442 123 HOH HOH . D 4 HOH A 143 443 125 HOH HOH . D 4 HOH A 144 444 128 HOH HOH . D 4 HOH A 145 445 129 HOH HOH . D 4 HOH A 146 446 131 HOH HOH . D 4 HOH A 147 447 132 HOH HOH . D 4 HOH A 148 448 134 HOH HOH . D 4 HOH A 149 449 136 HOH HOH . D 4 HOH A 150 450 137 HOH HOH . D 4 HOH A 151 451 139 HOH HOH . D 4 HOH A 152 452 140 HOH HOH . D 4 HOH A 153 453 141 HOH HOH . D 4 HOH A 154 454 144 HOH HOH . D 4 HOH A 155 455 145 HOH HOH . D 4 HOH A 156 456 148 HOH HOH . D 4 HOH A 157 457 150 HOH HOH . D 4 HOH A 158 458 151 HOH HOH . D 4 HOH A 159 459 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . C 3 30.837 -17.304 -2.914 1 28.62 ? N1 EPE 201 A 1 HETATM 2 C C2 EPE . . . C 3 31.971 -18.237 -2.855 1 23.77 ? C2 EPE 201 A 1 HETATM 3 C C3 EPE . . . C 3 33.046 -17.677 -1.927 1 23.26 ? C3 EPE 201 A 1 HETATM 4 N N4 EPE . . . C 3 33.396 -16.311 -2.262 1 20.28 ? N4 EPE 201 A 1 HETATM 5 C C5 EPE . . . C 3 32.318 -15.398 -2.607 1 21.17 ? C5 EPE 201 A 1 HETATM 6 C C6 EPE . . . C 3 31.281 -16.041 -3.52 1 23.93 ? C6 EPE 201 A 1 HETATM 7 C C7 EPE . . . C 3 34.559 -15.738 -1.602 1 18.85 ? C7 EPE 201 A 1 HETATM 8 C C8 EPE . . . C 3 34.435 -15.768 -0.083 1 21.63 ? C8 EPE 201 A 1 HETATM 9 O O8 EPE . . . C 3 33.216 -15.169 0.295 1 15.88 ? O8 EPE 201 A 1 HETATM 10 C C9 EPE . . . C 3 29.773 -17.887 -3.745 1 34.64 ? C9 EPE 201 A 1 HETATM 11 C C10 EPE . . . C 3 28.819 -18.657 -2.846 1 47.74 ? C10 EPE 201 A 1 HETATM 12 S S EPE . . . C 3 27.231 -18.973 -3.653 1 48.34 ? S EPE 201 A 1 HETATM 13 O O1S EPE . . . C 3 27.45 -19.28 -5.065 1 43.82 ? O1S EPE 201 A 1 HETATM 14 O O2S EPE . . . C 3 26.388 -17.784 -3.547 1 46.9 ? O2S EPE 201 A 1 HETATM 15 O O3S EPE . . . C 3 26.589 -20.107 -2.993 1 64 ? O3S EPE 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 970 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 15 #