data_4W5B # _model_server_result.job_id bdXHAbwBpnpVhdugItPLvg _model_server_result.datetime_utc '2024-11-30 09:26:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4w5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 4W5B # _exptl.entry_id 4W5B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 255.275 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(1H-benzimidazol-2-yl)-1,3-dimethyl-1H-pyrazole-4-carboxamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4W5B _cell.length_a 137.1 _cell.length_b 137.1 _cell.length_c 109.8 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4W5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf3 A SG CYS 155 A CYS 155 1_555 A SG CYS 203 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 B SG CYS 22 B CYS 22 1_555 B SG CYS 63 B CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 B SG CYS 56 B CYS 56 1_555 B SG CYS 101 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 155 B CYS 155 1_555 B SG CYS 203 B CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 C SG CYS 22 C CYS 22 1_555 C SG CYS 63 C CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 C SG CYS 56 C CYS 56 1_555 C SG CYS 101 C CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf9 C SG CYS 155 C CYS 155 1_555 C SG CYS 203 C CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C13 H13 N5 O' _chem_comp.formula_weight 255.275 _chem_comp.id 3H5 _chem_comp.mon_nstd_flag . _chem_comp.name N-(1H-benzimidazol-2-yl)-1,3-dimethyl-1H-pyrazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C14 3H5 doub 1 n y C15 C16 3H5 sing 2 n y C14 C13 3H5 sing 3 n y C16 C17 3H5 doub 4 n y C13 C18 3H5 doub 5 n y C13 N12 3H5 sing 6 n y C17 C18 3H5 sing 7 n y C18 N19 3H5 sing 8 n y N12 C11 3H5 sing 9 n y N19 C11 3H5 doub 10 n y C11 N10 3H5 sing 11 n n O09 C08 3H5 doub 12 n n N10 C08 3H5 sing 13 n n C08 C07 3H5 sing 14 n n C01 C02 3H5 sing 15 n n C07 C02 3H5 sing 16 n y C07 C06 3H5 doub 17 n y C02 N03 3H5 doub 18 n y N03 N04 3H5 sing 19 n y C06 N04 3H5 sing 20 n y N04 C05 3H5 sing 21 n n C14 H1 3H5 sing 22 n n C15 H2 3H5 sing 23 n n C16 H3 3H5 sing 24 n n C01 H4 3H5 sing 25 n n C01 H5 3H5 sing 26 n n C01 H6 3H5 sing 27 n n C05 H7 3H5 sing 28 n n C05 H8 3H5 sing 29 n n C05 H9 3H5 sing 30 n n C06 H10 3H5 sing 31 n n N10 H11 3H5 sing 32 n n N12 H12 3H5 sing 33 n n C17 H13 3H5 sing 34 n n # _atom_sites.entry_id 4W5B _atom_sites.fract_transf_matrix[1][1] 0.007294 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007294 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009107 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 3H5 A 1 301 1 3H5 INH . E 2 3H5 B 1 301 3 3H5 INH . F 2 3H5 C 1 301 2 3H5 INH . G 3 HOH A 1 401 71 HOH HOH . G 3 HOH A 2 402 73 HOH HOH . G 3 HOH A 3 403 57 HOH HOH . G 3 HOH A 4 404 29 HOH HOH . G 3 HOH A 5 405 51 HOH HOH . G 3 HOH A 6 406 53 HOH HOH . G 3 HOH A 7 407 8 HOH HOH . G 3 HOH A 8 408 30 HOH HOH . G 3 HOH A 9 409 4 HOH HOH . G 3 HOH A 10 410 15 HOH HOH . G 3 HOH A 11 411 70 HOH HOH . G 3 HOH A 12 412 10 HOH HOH . G 3 HOH A 13 413 58 HOH HOH . G 3 HOH A 14 414 72 HOH HOH . G 3 HOH A 15 415 56 HOH HOH . G 3 HOH A 16 416 6 HOH HOH . G 3 HOH A 17 417 9 HOH HOH . G 3 HOH A 18 418 13 HOH HOH . G 3 HOH A 19 419 18 HOH HOH . G 3 HOH A 20 420 19 HOH HOH . G 3 HOH A 21 421 20 HOH HOH . G 3 HOH A 22 422 22 HOH HOH . G 3 HOH A 23 423 25 HOH HOH . G 3 HOH A 24 424 27 HOH HOH . G 3 HOH A 25 425 31 HOH HOH . G 3 HOH A 26 426 34 HOH HOH . G 3 HOH A 27 427 36 HOH HOH . G 3 HOH A 28 428 37 HOH HOH . G 3 HOH A 29 429 39 HOH HOH . G 3 HOH A 30 430 41 HOH HOH . G 3 HOH A 31 431 43 HOH HOH . G 3 HOH A 32 432 45 HOH HOH . G 3 HOH A 33 433 54 HOH HOH . G 3 HOH A 34 434 55 HOH HOH . G 3 HOH A 35 435 59 HOH HOH . G 3 HOH A 36 436 69 HOH HOH . G 3 HOH A 37 437 74 HOH HOH . G 3 HOH A 38 438 75 HOH HOH . G 3 HOH A 39 439 88 HOH HOH . H 3 HOH B 1 401 81 HOH HOH . H 3 HOH B 2 402 83 HOH HOH . H 3 HOH B 3 403 78 HOH HOH . H 3 HOH B 4 404 82 HOH HOH . H 3 HOH B 5 405 79 HOH HOH . H 3 HOH B 6 406 77 HOH HOH . H 3 HOH B 7 407 24 HOH HOH . H 3 HOH B 8 408 80 HOH HOH . H 3 HOH B 9 409 5 HOH HOH . H 3 HOH B 10 410 2 HOH HOH . H 3 HOH B 11 411 3 HOH HOH . H 3 HOH B 12 412 7 HOH HOH . H 3 HOH B 13 413 11 HOH HOH . H 3 HOH B 14 414 12 HOH HOH . H 3 HOH B 15 415 14 HOH HOH . H 3 HOH B 16 416 16 HOH HOH . H 3 HOH B 17 417 17 HOH HOH . H 3 HOH B 18 418 23 HOH HOH . H 3 HOH B 19 419 28 HOH HOH . H 3 HOH B 20 420 32 HOH HOH . H 3 HOH B 21 421 40 HOH HOH . H 3 HOH B 22 422 42 HOH HOH . H 3 HOH B 23 423 44 HOH HOH . H 3 HOH B 24 424 49 HOH HOH . H 3 HOH B 25 425 52 HOH HOH . H 3 HOH B 26 426 60 HOH HOH . H 3 HOH B 27 427 61 HOH HOH . H 3 HOH B 28 428 67 HOH HOH . H 3 HOH B 29 429 76 HOH HOH . I 3 HOH C 1 401 63 HOH HOH . I 3 HOH C 2 402 86 HOH HOH . I 3 HOH C 3 403 87 HOH HOH . I 3 HOH C 4 404 64 HOH HOH . I 3 HOH C 5 405 1 HOH HOH . I 3 HOH C 6 406 21 HOH HOH . I 3 HOH C 7 407 26 HOH HOH . I 3 HOH C 8 408 33 HOH HOH . I 3 HOH C 9 409 35 HOH HOH . I 3 HOH C 10 410 38 HOH HOH . I 3 HOH C 11 411 46 HOH HOH . I 3 HOH C 12 412 47 HOH HOH . I 3 HOH C 13 413 48 HOH HOH . I 3 HOH C 14 414 50 HOH HOH . I 3 HOH C 15 415 62 HOH HOH . I 3 HOH C 16 416 65 HOH HOH . I 3 HOH C 17 417 66 HOH HOH . I 3 HOH C 18 418 68 HOH HOH . I 3 HOH C 19 419 84 HOH HOH . I 3 HOH C 20 420 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 3H5 . . . D 2 -11.078 -51.399 -16.338 0.8 71.03 ? C11 3H5 301 A 1 HETATM 2 C C13 3H5 . . . D 2 -9.851 -51.912 -18.146 0.8 76.24 ? C13 3H5 301 A 1 HETATM 3 C C14 3H5 . . . D 2 -9.28 -52.46 -19.352 0.8 68.42 ? C14 3H5 301 A 1 HETATM 4 C C15 3H5 . . . D 2 -8.042 -51.982 -19.847 0.8 60.13 ? C15 3H5 301 A 1 HETATM 5 C C16 3H5 . . . D 2 -7.379 -50.962 -19.159 0.8 61.56 ? C16 3H5 301 A 1 HETATM 6 C C01 3H5 . . . D 2 -16.567 -52.875 -15.137 0.8 69.23 ? C01 3H5 301 A 1 HETATM 7 C C02 3H5 . . . D 2 -15.753 -52.031 -14.186 0.8 72.02 ? C02 3H5 301 A 1 HETATM 8 N N03 3H5 . . . D 2 -16.285 -51.413 -13.121 0.8 73.7 ? N03 3H5 301 A 1 HETATM 9 N N04 3H5 . . . D 2 -15.281 -50.725 -12.453 0.8 72.57 ? N04 3H5 301 A 1 HETATM 10 C C05 3H5 . . . D 2 -15.444 -49.936 -11.245 0.8 58.61 ? C05 3H5 301 A 1 HETATM 11 C C06 3H5 . . . D 2 -14.129 -50.915 -13.117 0.8 76.21 ? C06 3H5 301 A 1 HETATM 12 C C07 3H5 . . . D 2 -14.364 -51.759 -14.214 0.8 74.76 ? C07 3H5 301 A 1 HETATM 13 C C08 3H5 . . . D 2 -13.324 -52.16 -15.229 0.8 76.91 ? C08 3H5 301 A 1 HETATM 14 O O09 3H5 . . . D 2 -13.445 -53.143 -15.939 0.8 78.72 ? O09 3H5 301 A 1 HETATM 15 N N10 3H5 . . . D 2 -12.162 -51.295 -15.366 0.8 76.28 ? N10 3H5 301 A 1 HETATM 16 N N12 3H5 . . . D 2 -11.039 -52.188 -17.428 0.8 75.96 ? N12 3H5 301 A 1 HETATM 17 C C17 3H5 . . . D 2 -7.931 -50.409 -17.988 0.8 64.79 ? C17 3H5 301 A 1 HETATM 18 C C18 3H5 . . . D 2 -9.191 -50.907 -17.473 0.8 70.83 ? C18 3H5 301 A 1 HETATM 19 N N19 3H5 . . . D 2 -9.979 -50.593 -16.362 0.8 66.4 ? N19 3H5 301 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #