data_4W5C
#
_model_server_result.job_id            VxcuZo_I_BONDWTW4k9OqA 
_model_server_result.datetime_utc      '2024-12-23 19:40:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4w5c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":302}' 
#
_entry.id    4W5C 
#
_exptl.entry_id    4W5C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              255.275 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(1H-benzimidazol-2-yl)-1,3-dimethyl-1H-pyrazole-4-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4W5C 
_cell.length_a            137.79 
_cell.length_b            137.79 
_cell.length_c            166.48 
_cell.Z_PDB               40 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4W5C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
PISA monomeric 1 software_defined_assembly 4 
PISA monomeric 1 software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,F,G,L 1 1 
B,H,M 2 1 
C,I,J,N 3 1 
D,K,O 4 1 
E,P 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 A CYS 22 1_555 A SG CYS 64 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 57 A CYS 56 1_555 A SG CYS 102 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 156 A CYS 155 1_555 A SG CYS 204 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 B SG CYS 23 B CYS 22 1_555 B SG CYS 64 B CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf5 B SG CYS 57 B CYS 56 1_555 B SG CYS 102 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf6 B SG CYS 156 B CYS 155 1_555 B SG CYS 204 B CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf7 C SG CYS 23 C CYS 22 1_555 C SG CYS 64 C CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf8 C SG CYS 57 C CYS 56 1_555 C SG CYS 102 C CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 C SG CYS 156 C CYS 155 1_555 C SG CYS 204 C CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf10 D SG CYS 23 D CYS 22 1_555 D SG CYS 64 D CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf11 D SG CYS 57 D CYS 56 1_555 D SG CYS 102 D CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 D SG CYS 156 D CYS 155 1_555 D SG CYS 204 D CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf13 E SG CYS 23 E CYS 22 1_555 E SG CYS 64 E CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf14 E SG CYS 57 E CYS 56 1_555 E SG CYS 102 E CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf15 E SG CYS 156 E CYS 155 1_555 E SG CYS 204 E CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C13 H13 N5 O' 
_chem_comp.formula_weight    255.275 
_chem_comp.id                3H5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(1H-benzimidazol-2-yl)-1,3-dimethyl-1H-pyrazole-4-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 C14 3H5 doub 1 n y 
C15 C16 3H5 sing 2 n y 
C14 C13 3H5 sing 3 n y 
C16 C17 3H5 doub 4 n y 
C13 C18 3H5 doub 5 n y 
C13 N12 3H5 sing 6 n y 
C17 C18 3H5 sing 7 n y 
C18 N19 3H5 sing 8 n y 
N12 C11 3H5 sing 9 n y 
N19 C11 3H5 doub 10 n y 
C11 N10 3H5 sing 11 n n 
O09 C08 3H5 doub 12 n n 
N10 C08 3H5 sing 13 n n 
C08 C07 3H5 sing 14 n n 
C01 C02 3H5 sing 15 n n 
C07 C02 3H5 sing 16 n y 
C07 C06 3H5 doub 17 n y 
C02 N03 3H5 doub 18 n y 
N03 N04 3H5 sing 19 n y 
C06 N04 3H5 sing 20 n y 
N04 C05 3H5 sing 21 n n 
C14 H1 3H5 sing 22 n n 
C15 H2 3H5 sing 23 n n 
C16 H3 3H5 sing 24 n n 
C01 H4 3H5 sing 25 n n 
C01 H5 3H5 sing 26 n n 
C01 H6 3H5 sing 27 n n 
C05 H7 3H5 sing 28 n n 
C05 H8 3H5 sing 29 n n 
C05 H9 3H5 sing 30 n n 
C06 H10 3H5 sing 31 n n 
N10 H11 3H5 sing 32 n n 
N12 H12 3H5 sing 33 n n 
C17 H13 3H5 sing 34 n n 
#
_atom_sites.entry_id                     4W5C 
_atom_sites.fract_transf_matrix[1][1]    0.007257 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007257 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006007 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 3H5 A 1 301 301 3H5 3H5 . 
G 3 3H6 A 1 302 302 3H6 3H6 . 
H 4 3H7 B 1 301 301 3H7 3H7 . 
I 4 3H7 C 1 301 301 3H7 3H7 . 
J 2 3H5 C 1 302 302 3H5 3H5 . 
K 4 3H7 D 1 301 301 3H7 3H7 . 
L 5 HOH A 1 401 401 HOH HOH . 
L 5 HOH A 2 402 404 HOH HOH . 
L 5 HOH A 3 403 405 HOH HOH . 
L 5 HOH A 4 404 403 HOH HOH . 
L 5 HOH A 5 405 406 HOH HOH . 
L 5 HOH A 6 406 402 HOH HOH . 
M 5 HOH B 1 401 402 HOH HOH . 
M 5 HOH B 2 402 401 HOH HOH . 
M 5 HOH B 3 403 404 HOH HOH . 
M 5 HOH B 4 404 403 HOH HOH . 
N 5 HOH C 1 401 401 HOH HOH . 
N 5 HOH C 2 402 402 HOH HOH . 
N 5 HOH C 3 403 403 HOH HOH . 
N 5 HOH C 4 404 404 HOH HOH . 
O 5 HOH D 1 401 401 HOH HOH . 
O 5 HOH D 2 402 402 HOH HOH . 
O 5 HOH D 3 403 404 HOH HOH . 
O 5 HOH D 4 404 403 HOH HOH . 
P 5 HOH E 1 301 302 HOH HOH . 
P 5 HOH E 2 302 301 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 3H5 . . . J 2 -36.806 4.828 23.646 0.68 110.05 ? C11 3H5 302 C 1 
HETATM 2 C C13 3H5 . . . J 2 -37.461 4.99 25.769 0.68 106.13 ? C13 3H5 302 C 1 
HETATM 3 C C14 3H5 . . . J 2 -37.565 4.985 27.194 0.68 80.13 ? C14 3H5 302 C 1 
HETATM 4 C C15 3H5 . . . J 2 -38.758 5.409 27.81 0.68 85.85 ? C15 3H5 302 C 1 
HETATM 5 C C16 3H5 . . . J 2 -39.822 5.831 27.008 0.68 107.21 ? C16 3H5 302 C 1 
HETATM 6 C C01 3H5 . . . J 2 -33.148 3.802 21.153 0.68 83.27 ? C01 3H5 302 C 1 
HETATM 7 C C02 3H5 . . . J 2 -34.101 2.89 20.436 0.68 100.19 ? C02 3H5 302 C 1 
HETATM 8 N N03 3H5 . . . J 2 -33.786 2.141 19.374 0.68 118.18 ? N03 3H5 302 C 1 
HETATM 9 N N04 3H5 . . . J 2 -34.922 1.441 18.993 0.68 124.31 ? N04 3H5 302 C 1 
HETATM 10 C C05 3H5 . . . J 2 -35.019 0.522 17.877 0.68 110.59 ? C05 3H5 302 C 1 
HETATM 11 C C06 3H5 . . . J 2 -35.928 1.751 19.818 0.68 115.49 ? C06 3H5 302 C 1 
HETATM 12 C C07 3H5 . . . J 2 -35.455 2.689 20.736 0.68 102.93 ? C07 3H5 302 C 1 
HETATM 13 C C08 3H5 . . . J 2 -36.271 3.266 21.845 0.68 109.51 ? C08 3H5 302 C 1 
HETATM 14 O O09 3H5 . . . J 2 -37.277 2.676 22.179 0.68 111.41 ? O09 3H5 302 C 1 
HETATM 15 N N10 3H5 . . . J 2 -35.919 4.486 22.548 0.68 112.07 ? N10 3H5 302 C 1 
HETATM 16 N N12 3H5 . . . J 2 -36.421 4.628 24.919 0.68 108.54 ? N12 3H5 302 C 1 
HETATM 17 C C17 3H5 . . . J 2 -39.718 5.837 25.606 0.68 114.63 ? C17 3H5 302 C 1 
HETATM 18 C C18 3H5 . . . J 2 -38.502 5.402 24.973 0.68 116.27 ? C18 3H5 302 C 1 
HETATM 19 N N19 3H5 . . . J 2 -38.089 5.288 23.638 0.68 106.76 ? N19 3H5 302 C 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           439 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#