data_4W5T # _model_server_result.job_id 5ymlH3LPF1KMcHJe32lZag _model_server_result.datetime_utc '2025-01-20 12:12:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4w5t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":902}' # _entry.id 4W5T # _exptl.entry_id 4W5T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.111 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHENOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.33 _cell.angle_gamma 90 _cell.entry_id 4W5T _cell.length_a 55.636 _cell.length_b 116.468 _cell.length_c 69.822 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4W5T _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 597 A ASP 597 1_555 D MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc2 A O VAL 598 A VAL 598 1_555 D MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc3 D MG MG . A MG 901 1_555 J O HOH . A HOH 1032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc4 D MG MG . A MG 901 1_555 J O HOH . A HOH 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc5 D MG MG . A MG 901 1_555 J O HOH . A HOH 1034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc6 D MG MG . A MG 901 1_555 J O HOH . A HOH 1124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc7 C O4 U 4 D U 4 1_555 I MG MG . D MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc8 I MG MG . D MG 101 1_555 L O HOH . D HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc9 I MG MG . D MG 101 1_555 L O HOH . D HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc10 I MG MG . D MG 101 1_555 L O HOH . D HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? hydrog WATSON-CRICK hydrog1 B N3 U 2 B U 2 1_555 C N1 A 8 D A 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B O4 U 2 B U 2 1_555 C N6 A 8 D A 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N3 C 3 B C 3 1_555 C N1 G 7 D G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N4 C 3 B C 3 1_555 C O6 G 7 D G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O2 C 3 B C 3 1_555 C N2 G 7 D G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 A 4 B A 4 1_555 C N3 U 6 D U 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N6 A 4 B A 4 1_555 C O4 U 6 D U 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 C 5 B C 5 1_555 C N1 G 5 D G 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N4 C 5 B C 5 1_555 C O6 G 5 D G 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O2 C 5 B C 5 1_555 C N2 G 5 D G 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N1 A 6 B A 6 1_555 C N3 U 4 D U 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N6 A 6 B A 6 1_555 C O4 U 4 D U 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N3 U 7 B U 7 1_555 C N1 A 3 D A 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O4 U 7 B U 7 1_555 C N6 A 3 D A 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-A PAIR' hydrog15 B O2 U 8 B U 8 1_555 C N6 A 1 D A 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-C MISPAIR' hydrog16 B O2 U 8 B U 8 1_555 C N4 C 2 D C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H6 O' _chem_comp.formula_weight 94.111 _chem_comp.id IPH _chem_comp.mon_nstd_flag . _chem_comp.name PHENOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IPH doub 288 n y C1 C6 IPH sing 289 n y C1 O1 IPH sing 290 n n C2 C3 IPH sing 291 n y C2 H2 IPH sing 292 n n C3 C4 IPH doub 293 n y C3 H3 IPH sing 294 n n C4 C5 IPH sing 295 n y C4 H4 IPH sing 296 n n C5 C6 IPH doub 297 n y C5 H5 IPH sing 298 n n C6 H6 IPH sing 299 n n O1 HO1 IPH sing 300 n n # _atom_sites.entry_id 4W5T _atom_sites.fract_transf_matrix[1][1] 0.017974 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000733 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014334 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 901 1 MG MG . E 5 IPH A 1 902 901 IPH IPH . F 5 IPH A 1 903 902 IPH IPH . G 5 IPH A 1 904 903 IPH IPH . H 5 IPH A 1 905 904 IPH IPH . I 4 MG D 1 101 2 MG MG . J 6 HOH A 1 1001 23 HOH HOH . J 6 HOH A 2 1002 67 HOH HOH . J 6 HOH A 3 1003 112 HOH HOH . J 6 HOH A 4 1004 75 HOH HOH . J 6 HOH A 5 1005 44 HOH HOH . J 6 HOH A 6 1006 36 HOH HOH . J 6 HOH A 7 1007 129 HOH HOH . J 6 HOH A 8 1008 38 HOH HOH . J 6 HOH A 9 1009 137 HOH HOH . J 6 HOH A 10 1010 32 HOH HOH . J 6 HOH A 11 1011 100 HOH HOH . J 6 HOH A 12 1012 43 HOH HOH . J 6 HOH A 13 1013 69 HOH HOH . J 6 HOH A 14 1014 68 HOH HOH . J 6 HOH A 15 1015 51 HOH HOH . J 6 HOH A 16 1016 99 HOH HOH . J 6 HOH A 17 1017 134 HOH HOH . J 6 HOH A 18 1018 122 HOH HOH . J 6 HOH A 19 1019 158 HOH HOH . J 6 HOH A 20 1020 65 HOH HOH . J 6 HOH A 21 1021 133 HOH HOH . J 6 HOH A 22 1022 101 HOH HOH . J 6 HOH A 23 1023 97 HOH HOH . J 6 HOH A 24 1024 98 HOH HOH . J 6 HOH A 25 1025 167 HOH HOH . J 6 HOH A 26 1026 102 HOH HOH . J 6 HOH A 27 1027 139 HOH HOH . J 6 HOH A 28 1028 121 HOH HOH . J 6 HOH A 29 1029 140 HOH HOH . J 6 HOH A 30 1030 48 HOH HOH . J 6 HOH A 31 1031 9 HOH HOH . J 6 HOH A 32 1032 1 HOH HOH . J 6 HOH A 33 1033 2 HOH HOH . J 6 HOH A 34 1034 3 HOH HOH . J 6 HOH A 35 1035 7 HOH HOH . J 6 HOH A 36 1036 8 HOH HOH . J 6 HOH A 37 1037 10 HOH HOH . J 6 HOH A 38 1038 13 HOH HOH . J 6 HOH A 39 1039 14 HOH HOH . J 6 HOH A 40 1040 15 HOH HOH . J 6 HOH A 41 1041 16 HOH HOH . J 6 HOH A 42 1042 17 HOH HOH . J 6 HOH A 43 1043 20 HOH HOH . J 6 HOH A 44 1044 22 HOH HOH . J 6 HOH A 45 1045 24 HOH HOH . J 6 HOH A 46 1046 25 HOH HOH . J 6 HOH A 47 1047 26 HOH HOH . J 6 HOH A 48 1048 27 HOH HOH . J 6 HOH A 49 1049 28 HOH HOH . J 6 HOH A 50 1050 29 HOH HOH . J 6 HOH A 51 1051 30 HOH HOH . J 6 HOH A 52 1052 31 HOH HOH . J 6 HOH A 53 1053 33 HOH HOH . J 6 HOH A 54 1054 34 HOH HOH . J 6 HOH A 55 1055 35 HOH HOH . J 6 HOH A 56 1056 37 HOH HOH . J 6 HOH A 57 1057 39 HOH HOH . J 6 HOH A 58 1058 40 HOH HOH . J 6 HOH A 59 1059 41 HOH HOH . J 6 HOH A 60 1060 42 HOH HOH . J 6 HOH A 61 1061 45 HOH HOH . J 6 HOH A 62 1062 46 HOH HOH . J 6 HOH A 63 1063 47 HOH HOH . J 6 HOH A 64 1064 49 HOH HOH . J 6 HOH A 65 1065 50 HOH HOH . J 6 HOH A 66 1066 52 HOH HOH . J 6 HOH A 67 1067 54 HOH HOH . J 6 HOH A 68 1068 55 HOH HOH . J 6 HOH A 69 1069 56 HOH HOH . J 6 HOH A 70 1070 57 HOH HOH . J 6 HOH A 71 1071 58 HOH HOH . J 6 HOH A 72 1072 59 HOH HOH . J 6 HOH A 73 1073 61 HOH HOH . J 6 HOH A 74 1074 63 HOH HOH . J 6 HOH A 75 1075 64 HOH HOH . J 6 HOH A 76 1076 66 HOH HOH . J 6 HOH A 77 1077 70 HOH HOH . J 6 HOH A 78 1078 71 HOH HOH . J 6 HOH A 79 1079 73 HOH HOH . J 6 HOH A 80 1080 76 HOH HOH . J 6 HOH A 81 1081 77 HOH HOH . J 6 HOH A 82 1082 78 HOH HOH . J 6 HOH A 83 1083 79 HOH HOH . J 6 HOH A 84 1084 80 HOH HOH . J 6 HOH A 85 1085 81 HOH HOH . J 6 HOH A 86 1086 83 HOH HOH . J 6 HOH A 87 1087 84 HOH HOH . J 6 HOH A 88 1088 85 HOH HOH . J 6 HOH A 89 1089 86 HOH HOH . J 6 HOH A 90 1090 87 HOH HOH . J 6 HOH A 91 1091 88 HOH HOH . J 6 HOH A 92 1092 89 HOH HOH . J 6 HOH A 93 1093 90 HOH HOH . J 6 HOH A 94 1094 91 HOH HOH . J 6 HOH A 95 1095 92 HOH HOH . J 6 HOH A 96 1096 93 HOH HOH . J 6 HOH A 97 1097 94 HOH HOH . J 6 HOH A 98 1098 95 HOH HOH . J 6 HOH A 99 1099 96 HOH HOH . J 6 HOH A 100 1100 104 HOH HOH . J 6 HOH A 101 1101 105 HOH HOH . J 6 HOH A 102 1102 106 HOH HOH . J 6 HOH A 103 1103 107 HOH HOH . J 6 HOH A 104 1104 109 HOH HOH . J 6 HOH A 105 1105 110 HOH HOH . J 6 HOH A 106 1106 111 HOH HOH . J 6 HOH A 107 1107 113 HOH HOH . J 6 HOH A 108 1108 115 HOH HOH . J 6 HOH A 109 1109 116 HOH HOH . J 6 HOH A 110 1110 123 HOH HOH . J 6 HOH A 111 1111 124 HOH HOH . J 6 HOH A 112 1112 125 HOH HOH . J 6 HOH A 113 1113 126 HOH HOH . J 6 HOH A 114 1114 127 HOH HOH . J 6 HOH A 115 1115 128 HOH HOH . J 6 HOH A 116 1116 130 HOH HOH . J 6 HOH A 117 1117 132 HOH HOH . J 6 HOH A 118 1118 135 HOH HOH . J 6 HOH A 119 1119 136 HOH HOH . J 6 HOH A 120 1120 138 HOH HOH . J 6 HOH A 121 1121 143 HOH HOH . J 6 HOH A 122 1122 144 HOH HOH . J 6 HOH A 123 1123 147 HOH HOH . J 6 HOH A 124 1124 148 HOH HOH . J 6 HOH A 125 1125 149 HOH HOH . J 6 HOH A 126 1126 150 HOH HOH . J 6 HOH A 127 1127 152 HOH HOH . J 6 HOH A 128 1128 154 HOH HOH . J 6 HOH A 129 1129 155 HOH HOH . J 6 HOH A 130 1130 156 HOH HOH . J 6 HOH A 131 1131 157 HOH HOH . J 6 HOH A 132 1132 159 HOH HOH . J 6 HOH A 133 1133 162 HOH HOH . J 6 HOH A 134 1134 163 HOH HOH . J 6 HOH A 135 1135 164 HOH HOH . J 6 HOH A 136 1136 165 HOH HOH . J 6 HOH A 137 1137 166 HOH HOH . J 6 HOH A 138 1138 168 HOH HOH . J 6 HOH A 139 1139 169 HOH HOH . J 6 HOH A 140 1140 170 HOH HOH . J 6 HOH A 141 1141 172 HOH HOH . K 6 HOH B 1 101 11 HOH HOH . K 6 HOH B 2 102 12 HOH HOH . K 6 HOH B 3 103 18 HOH HOH . K 6 HOH B 4 104 19 HOH HOH . K 6 HOH B 5 105 21 HOH HOH . K 6 HOH B 6 106 82 HOH HOH . K 6 HOH B 7 107 103 HOH HOH . K 6 HOH B 8 108 118 HOH HOH . K 6 HOH B 9 109 153 HOH HOH . K 6 HOH B 10 110 160 HOH HOH . L 6 HOH D 1 201 4 HOH HOH . L 6 HOH D 2 202 6 HOH HOH . L 6 HOH D 3 203 108 HOH HOH . L 6 HOH D 4 204 151 HOH HOH . L 6 HOH D 5 205 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IPH . . . E 5 69.222 3.045 45.389 1 80.66 ? C1 IPH 902 A 1 HETATM 2 C C2 IPH . . . E 5 68.196 2.305 45.969 1 82.39 ? C2 IPH 902 A 1 HETATM 3 C C3 IPH . . . E 5 67.301 2.927 46.837 1 83.68 ? C3 IPH 902 A 1 HETATM 4 C C4 IPH . . . E 5 67.432 4.284 47.123 1 82.41 ? C4 IPH 902 A 1 HETATM 5 C C5 IPH . . . E 5 68.46 5.023 46.544 1 81 ? C5 IPH 902 A 1 HETATM 6 C C6 IPH . . . E 5 69.354 4.401 45.676 1 80.66 ? C6 IPH 902 A 1 HETATM 7 O O1 IPH . . . E 5 70.1 2.437 44.532 1 78.38 ? O1 IPH 902 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #