data_4W5U
#
_model_server_result.job_id            uIUpnoab3E_fEcmzlZPz9A 
_model_server_result.datetime_utc      '2024-11-05 00:26:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4w5u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    4W5U 
#
_exptl.entry_id    4W5U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.046 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4W5U 
_cell.length_a            183.15 
_cell.length_b            183.15 
_cell.length_c            130.814 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4W5U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? Monomeric 1 author_and_software_defined_assembly 1 
? Monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 86 B CYS 86 1_555 A SG CYS 162 B CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 A SG CYS 188 B CYS 188 1_555 A SG CYS 192 B CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf3 A SG CYS 343 B CYS 343 1_555 A SG CYS 357 B CYS 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf4 B SG CYS 86 A CYS 86 1_555 B SG CYS 162 A CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
disulf ? disulf5 B SG CYS 188 A CYS 188 1_555 B SG CYS 192 A CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 B SG CYS 343 A CYS 343 1_555 B SG CYS 357 A CYS 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
#
_chem_comp.formula           'C3 H2 O4 -2' 
_chem_comp.formula_weight    102.046 
_chem_comp.id                MLI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MLI sing 237 n n 
C1 C3 MLI sing 238 n n 
C1 H11 MLI sing 239 n n 
C1 H12 MLI sing 240 n n 
C2 O6 MLI doub 241 n n 
C2 O7 MLI sing 242 n n 
C3 O8 MLI doub 243 n n 
C3 O9 MLI sing 244 n n 
#
_atom_sites.entry_id                     4W5U 
_atom_sites.fract_transf_matrix[1][1]    0.00546 
_atom_sites.fract_transf_matrix[1][2]    0.003152 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006305 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007644 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MLI B 1 501 1 MLI MLI . 
D 2 MLI A 1 501 2 MLI MLI . 
E 3 HOH B 1 601 125 HOH HOH . 
E 3 HOH B 2 602 35 HOH HOH . 
E 3 HOH B 3 603 112 HOH HOH . 
E 3 HOH B 4 604 126 HOH HOH . 
E 3 HOH B 5 605 113 HOH HOH . 
E 3 HOH B 6 606 5 HOH HOH . 
E 3 HOH B 7 607 12 HOH HOH . 
E 3 HOH B 8 608 17 HOH HOH . 
E 3 HOH B 9 609 19 HOH HOH . 
E 3 HOH B 10 610 26 HOH HOH . 
E 3 HOH B 11 611 27 HOH HOH . 
E 3 HOH B 12 612 28 HOH HOH . 
E 3 HOH B 13 613 29 HOH HOH . 
E 3 HOH B 14 614 30 HOH HOH . 
E 3 HOH B 15 615 33 HOH HOH . 
E 3 HOH B 16 616 34 HOH HOH . 
E 3 HOH B 17 617 36 HOH HOH . 
E 3 HOH B 18 618 39 HOH HOH . 
E 3 HOH B 19 619 40 HOH HOH . 
E 3 HOH B 20 620 54 HOH HOH . 
E 3 HOH B 21 621 55 HOH HOH . 
E 3 HOH B 22 622 62 HOH HOH . 
E 3 HOH B 23 623 64 HOH HOH . 
E 3 HOH B 24 624 66 HOH HOH . 
E 3 HOH B 25 625 90 HOH HOH . 
E 3 HOH B 26 626 91 HOH HOH . 
E 3 HOH B 27 627 145 HOH HOH . 
F 3 HOH A 1 601 67 HOH HOH . 
F 3 HOH A 2 602 142 HOH HOH . 
F 3 HOH A 3 603 6 HOH HOH . 
F 3 HOH A 4 604 10 HOH HOH . 
F 3 HOH A 5 605 48 HOH HOH . 
F 3 HOH A 6 606 52 HOH HOH . 
F 3 HOH A 7 607 87 HOH HOH . 
F 3 HOH A 8 608 2 HOH HOH . 
F 3 HOH A 9 609 3 HOH HOH . 
F 3 HOH A 10 610 4 HOH HOH . 
F 3 HOH A 11 611 8 HOH HOH . 
F 3 HOH A 12 612 14 HOH HOH . 
F 3 HOH A 13 613 15 HOH HOH . 
F 3 HOH A 14 614 16 HOH HOH . 
F 3 HOH A 15 615 18 HOH HOH . 
F 3 HOH A 16 616 25 HOH HOH . 
F 3 HOH A 17 617 31 HOH HOH . 
F 3 HOH A 18 618 42 HOH HOH . 
F 3 HOH A 19 619 43 HOH HOH . 
F 3 HOH A 20 620 44 HOH HOH . 
F 3 HOH A 21 621 46 HOH HOH . 
F 3 HOH A 22 622 47 HOH HOH . 
F 3 HOH A 23 623 50 HOH HOH . 
F 3 HOH A 24 624 51 HOH HOH . 
F 3 HOH A 25 625 53 HOH HOH . 
F 3 HOH A 26 626 57 HOH HOH . 
F 3 HOH A 27 627 58 HOH HOH . 
F 3 HOH A 28 628 59 HOH HOH . 
F 3 HOH A 29 629 60 HOH HOH . 
F 3 HOH A 30 630 63 HOH HOH . 
F 3 HOH A 31 631 68 HOH HOH . 
F 3 HOH A 32 632 70 HOH HOH . 
F 3 HOH A 33 633 72 HOH HOH . 
F 3 HOH A 34 634 74 HOH HOH . 
F 3 HOH A 35 635 79 HOH HOH . 
F 3 HOH A 36 636 82 HOH HOH . 
F 3 HOH A 37 637 84 HOH HOH . 
F 3 HOH A 38 638 85 HOH HOH . 
F 3 HOH A 39 639 86 HOH HOH . 
F 3 HOH A 40 640 88 HOH HOH . 
F 3 HOH A 41 641 89 HOH HOH . 
F 3 HOH A 42 642 100 HOH HOH . 
F 3 HOH A 43 643 114 HOH HOH . 
F 3 HOH A 44 644 121 HOH HOH . 
F 3 HOH A 45 645 122 HOH HOH . 
F 3 HOH A 46 646 128 HOH HOH . 
F 3 HOH A 47 647 137 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLI . . . D 2 80.462 82.197 17.581 1 86.95 ? C1 MLI 501 A 1 
HETATM 2 C C2 MLI . . . D 2 81.41 81.067 17.896 1 103.7 ? C2 MLI 501 A 1 
HETATM 3 C C3 MLI . . . D 2 79.184 81.742 16.94 1 87.08 ? C3 MLI 501 A 1 
HETATM 4 O O6 MLI . . . D 2 82.628 81.311 17.89 1 106.05 ? O6 MLI 501 A 1 
HETATM 5 O O7 MLI . . . D 2 80.972 79.939 18.175 1 107.38 ? O7 MLI 501 A 1 
HETATM 6 O O8 MLI . . . D 2 78.596 82.531 16.209 1 83.08 ? O8 MLI 501 A 1 
HETATM 7 O O9 MLI . . . D 2 78.736 80.615 17.153 1 92.57 ? O9 MLI 501 A 1 
#
_model_server_stats.io_time_ms              114 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           7 
#