data_4W6J
#
_model_server_result.job_id            2PWQqUdadByCqa6vGYrUCw 
_model_server_result.datetime_utc      '2024-11-14 23:04:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4w6j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    4W6J 
#
_exptl.entry_id    4W6J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4W6J 
_cell.length_a            113.74 
_cell.length_b            113.74 
_cell.length_c            82.46 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4W6J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 115 A CYS 117 1_555 B SG CYS 115 B CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
covale ? covale1 A C LEU 64 A LEU 64 1_555 A N1 CRO 65 A CRO 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale2 A C3 CRO 65 A CRO 66 1_555 A N VAL 66 A VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale3 B C LEU 64 B LEU 64 1_555 B N1 CRO 65 B CRO 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? 
covale ? covale4 B C3 CRO 65 B CRO 66 1_555 B N VAL 66 B VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 284 n n 
C1 H11 MPD sing 285 n n 
C1 H12 MPD sing 286 n n 
C1 H13 MPD sing 287 n n 
C2 O2 MPD sing 288 n n 
C2 CM MPD sing 289 n n 
C2 C3 MPD sing 290 n n 
O2 HO2 MPD sing 291 n n 
CM HM1 MPD sing 292 n n 
CM HM2 MPD sing 293 n n 
CM HM3 MPD sing 294 n n 
C3 C4 MPD sing 295 n n 
C3 H31 MPD sing 296 n n 
C3 H32 MPD sing 297 n n 
C4 O4 MPD sing 298 n n 
C4 C5 MPD sing 299 n n 
C4 H4 MPD sing 300 n n 
O4 HO4 MPD sing 301 n n 
C5 H51 MPD sing 302 n n 
C5 H52 MPD sing 303 n n 
C5 H53 MPD sing 304 n n 
#
_atom_sites.entry_id                     4W6J 
_atom_sites.fract_transf_matrix[1][1]    0.008792 
_atom_sites.fract_transf_matrix[1][2]    0.005076 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010152 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012127 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MPD A 1 301 301 MPD MPD . 
D 2 MPD A 1 302 302 MPD MPD . 
E 2 MPD A 1 303 303 MPD MPD . 
F 2 MPD A 1 304 304 MPD MPD . 
G 3 ACT A 1 305 305 ACT ACT . 
H 3 ACT A 1 306 306 ACT ACT . 
I 2 MPD B 1 301 301 MPD MPD . 
J 3 ACT B 1 302 302 ACT ACT . 
K 4 HOH A 1 401 401 HOH HOH . 
K 4 HOH A 2 402 403 HOH HOH . 
K 4 HOH A 3 403 404 HOH HOH . 
K 4 HOH A 4 404 405 HOH HOH . 
K 4 HOH A 5 405 406 HOH HOH . 
K 4 HOH A 6 406 407 HOH HOH . 
K 4 HOH A 7 407 402 HOH HOH . 
K 4 HOH A 8 408 408 HOH HOH . 
K 4 HOH A 9 409 409 HOH HOH . 
K 4 HOH A 10 410 410 HOH HOH . 
K 4 HOH A 11 411 411 HOH HOH . 
K 4 HOH A 12 412 412 HOH HOH . 
K 4 HOH A 13 413 413 HOH HOH . 
K 4 HOH A 14 414 414 HOH HOH . 
K 4 HOH A 15 415 415 HOH HOH . 
K 4 HOH A 16 416 416 HOH HOH . 
K 4 HOH A 17 417 417 HOH HOH . 
K 4 HOH A 18 418 418 HOH HOH . 
K 4 HOH A 19 419 419 HOH HOH . 
K 4 HOH A 20 420 420 HOH HOH . 
K 4 HOH A 21 421 421 HOH HOH . 
K 4 HOH A 22 422 422 HOH HOH . 
K 4 HOH A 23 423 423 HOH HOH . 
K 4 HOH A 24 424 424 HOH HOH . 
K 4 HOH A 25 425 425 HOH HOH . 
K 4 HOH A 26 426 427 HOH HOH . 
K 4 HOH A 27 427 428 HOH HOH . 
K 4 HOH A 28 428 429 HOH HOH . 
K 4 HOH A 29 429 430 HOH HOH . 
K 4 HOH A 30 430 432 HOH HOH . 
K 4 HOH A 31 431 431 HOH HOH . 
K 4 HOH A 32 432 434 HOH HOH . 
K 4 HOH A 33 433 435 HOH HOH . 
K 4 HOH A 34 434 436 HOH HOH . 
K 4 HOH A 35 435 437 HOH HOH . 
K 4 HOH A 36 436 438 HOH HOH . 
K 4 HOH A 37 437 433 HOH HOH . 
K 4 HOH A 38 438 439 HOH HOH . 
K 4 HOH A 39 439 441 HOH HOH . 
K 4 HOH A 40 440 442 HOH HOH . 
K 4 HOH A 41 441 443 HOH HOH . 
K 4 HOH A 42 442 445 HOH HOH . 
K 4 HOH A 43 443 446 HOH HOH . 
K 4 HOH A 44 444 448 HOH HOH . 
K 4 HOH A 45 445 449 HOH HOH . 
K 4 HOH A 46 446 450 HOH HOH . 
K 4 HOH A 47 447 451 HOH HOH . 
K 4 HOH A 48 448 452 HOH HOH . 
K 4 HOH A 49 449 453 HOH HOH . 
K 4 HOH A 50 450 454 HOH HOH . 
K 4 HOH A 51 451 455 HOH HOH . 
K 4 HOH A 52 452 456 HOH HOH . 
K 4 HOH A 53 453 457 HOH HOH . 
K 4 HOH A 54 454 458 HOH HOH . 
K 4 HOH A 55 455 459 HOH HOH . 
K 4 HOH A 56 456 460 HOH HOH . 
K 4 HOH A 57 457 461 HOH HOH . 
K 4 HOH A 58 458 462 HOH HOH . 
K 4 HOH A 59 459 463 HOH HOH . 
K 4 HOH A 60 460 464 HOH HOH . 
K 4 HOH A 61 461 465 HOH HOH . 
K 4 HOH A 62 462 466 HOH HOH . 
K 4 HOH A 63 463 467 HOH HOH . 
K 4 HOH A 64 464 468 HOH HOH . 
K 4 HOH A 65 465 469 HOH HOH . 
K 4 HOH A 66 466 470 HOH HOH . 
K 4 HOH A 67 467 471 HOH HOH . 
K 4 HOH A 68 468 472 HOH HOH . 
K 4 HOH A 69 469 473 HOH HOH . 
K 4 HOH A 70 470 474 HOH HOH . 
K 4 HOH A 71 471 475 HOH HOH . 
K 4 HOH A 72 472 476 HOH HOH . 
K 4 HOH A 73 473 477 HOH HOH . 
K 4 HOH A 74 474 478 HOH HOH . 
K 4 HOH A 75 475 479 HOH HOH . 
K 4 HOH A 76 476 480 HOH HOH . 
K 4 HOH A 77 477 481 HOH HOH . 
K 4 HOH A 78 478 482 HOH HOH . 
K 4 HOH A 79 479 483 HOH HOH . 
K 4 HOH A 80 480 484 HOH HOH . 
K 4 HOH A 81 481 485 HOH HOH . 
K 4 HOH A 82 482 486 HOH HOH . 
K 4 HOH A 83 483 487 HOH HOH . 
K 4 HOH A 84 484 488 HOH HOH . 
K 4 HOH A 85 485 489 HOH HOH . 
K 4 HOH A 86 486 490 HOH HOH . 
K 4 HOH A 87 487 491 HOH HOH . 
K 4 HOH A 88 488 492 HOH HOH . 
K 4 HOH A 89 489 493 HOH HOH . 
K 4 HOH A 90 490 494 HOH HOH . 
K 4 HOH A 91 491 495 HOH HOH . 
K 4 HOH A 92 492 496 HOH HOH . 
K 4 HOH A 93 493 497 HOH HOH . 
K 4 HOH A 94 494 498 HOH HOH . 
K 4 HOH A 95 495 499 HOH HOH . 
K 4 HOH A 96 496 500 HOH HOH . 
K 4 HOH A 97 497 501 HOH HOH . 
K 4 HOH A 98 498 502 HOH HOH . 
K 4 HOH A 99 499 503 HOH HOH . 
K 4 HOH A 100 500 504 HOH HOH . 
K 4 HOH A 101 501 505 HOH HOH . 
K 4 HOH A 102 502 506 HOH HOH . 
K 4 HOH A 103 503 507 HOH HOH . 
K 4 HOH A 104 504 508 HOH HOH . 
K 4 HOH A 105 505 509 HOH HOH . 
K 4 HOH A 106 506 510 HOH HOH . 
K 4 HOH A 107 507 511 HOH HOH . 
K 4 HOH A 108 508 512 HOH HOH . 
K 4 HOH A 109 509 513 HOH HOH . 
K 4 HOH A 110 510 514 HOH HOH . 
K 4 HOH A 111 511 515 HOH HOH . 
K 4 HOH A 112 512 516 HOH HOH . 
K 4 HOH A 113 513 517 HOH HOH . 
K 4 HOH A 114 514 518 HOH HOH . 
K 4 HOH A 115 515 519 HOH HOH . 
K 4 HOH A 116 516 520 HOH HOH . 
K 4 HOH A 117 517 521 HOH HOH . 
K 4 HOH A 118 518 522 HOH HOH . 
K 4 HOH A 119 519 523 HOH HOH . 
K 4 HOH A 120 520 524 HOH HOH . 
K 4 HOH A 121 521 525 HOH HOH . 
K 4 HOH A 122 522 526 HOH HOH . 
K 4 HOH A 123 523 527 HOH HOH . 
K 4 HOH A 124 524 528 HOH HOH . 
K 4 HOH A 125 525 529 HOH HOH . 
K 4 HOH A 126 526 530 HOH HOH . 
K 4 HOH A 127 527 531 HOH HOH . 
K 4 HOH A 128 528 532 HOH HOH . 
K 4 HOH A 129 529 533 HOH HOH . 
K 4 HOH A 130 530 534 HOH HOH . 
K 4 HOH A 131 531 535 HOH HOH . 
K 4 HOH A 132 532 536 HOH HOH . 
K 4 HOH A 133 533 537 HOH HOH . 
L 4 HOH B 1 401 401 HOH HOH . 
L 4 HOH B 2 402 402 HOH HOH . 
L 4 HOH B 3 403 403 HOH HOH . 
L 4 HOH B 4 404 404 HOH HOH . 
L 4 HOH B 5 405 405 HOH HOH . 
L 4 HOH B 6 406 406 HOH HOH . 
L 4 HOH B 7 407 407 HOH HOH . 
L 4 HOH B 8 408 408 HOH HOH . 
L 4 HOH B 9 409 409 HOH HOH . 
L 4 HOH B 10 410 410 HOH HOH . 
L 4 HOH B 11 411 411 HOH HOH . 
L 4 HOH B 12 412 412 HOH HOH . 
L 4 HOH B 13 413 413 HOH HOH . 
L 4 HOH B 14 414 414 HOH HOH . 
L 4 HOH B 15 415 415 HOH HOH . 
L 4 HOH B 16 416 416 HOH HOH . 
L 4 HOH B 17 417 417 HOH HOH . 
L 4 HOH B 18 418 418 HOH HOH . 
L 4 HOH B 19 419 419 HOH HOH . 
L 4 HOH B 20 420 420 HOH HOH . 
L 4 HOH B 21 421 421 HOH HOH . 
L 4 HOH B 22 422 422 HOH HOH . 
L 4 HOH B 23 423 424 HOH HOH . 
L 4 HOH B 24 424 425 HOH HOH . 
L 4 HOH B 25 425 426 HOH HOH . 
L 4 HOH B 26 426 427 HOH HOH . 
L 4 HOH B 27 427 428 HOH HOH . 
L 4 HOH B 28 428 429 HOH HOH . 
L 4 HOH B 29 429 430 HOH HOH . 
L 4 HOH B 30 430 431 HOH HOH . 
L 4 HOH B 31 431 432 HOH HOH . 
L 4 HOH B 32 432 433 HOH HOH . 
L 4 HOH B 33 433 434 HOH HOH . 
L 4 HOH B 34 434 435 HOH HOH . 
L 4 HOH B 35 435 436 HOH HOH . 
L 4 HOH B 36 436 437 HOH HOH . 
L 4 HOH B 37 437 438 HOH HOH . 
L 4 HOH B 38 438 439 HOH HOH . 
L 4 HOH B 39 439 440 HOH HOH . 
L 4 HOH B 40 440 441 HOH HOH . 
L 4 HOH B 41 441 442 HOH HOH . 
L 4 HOH B 42 442 443 HOH HOH . 
L 4 HOH B 43 443 444 HOH HOH . 
L 4 HOH B 44 444 445 HOH HOH . 
L 4 HOH B 45 445 446 HOH HOH . 
L 4 HOH B 46 446 447 HOH HOH . 
L 4 HOH B 47 447 448 HOH HOH . 
L 4 HOH B 48 448 449 HOH HOH . 
L 4 HOH B 49 449 450 HOH HOH . 
L 4 HOH B 50 450 451 HOH HOH . 
L 4 HOH B 51 451 452 HOH HOH . 
L 4 HOH B 52 452 453 HOH HOH . 
L 4 HOH B 53 453 454 HOH HOH . 
L 4 HOH B 54 454 455 HOH HOH . 
L 4 HOH B 55 455 456 HOH HOH . 
L 4 HOH B 56 456 457 HOH HOH . 
L 4 HOH B 57 457 458 HOH HOH . 
L 4 HOH B 58 458 459 HOH HOH . 
L 4 HOH B 59 459 460 HOH HOH . 
L 4 HOH B 60 460 461 HOH HOH . 
L 4 HOH B 61 461 462 HOH HOH . 
L 4 HOH B 62 462 463 HOH HOH . 
L 4 HOH B 63 463 464 HOH HOH . 
L 4 HOH B 64 464 465 HOH HOH . 
L 4 HOH B 65 465 466 HOH HOH . 
L 4 HOH B 66 466 467 HOH HOH . 
L 4 HOH B 67 467 468 HOH HOH . 
L 4 HOH B 68 468 469 HOH HOH . 
L 4 HOH B 69 469 470 HOH HOH . 
L 4 HOH B 70 470 471 HOH HOH . 
L 4 HOH B 71 471 472 HOH HOH . 
L 4 HOH B 72 472 473 HOH HOH . 
L 4 HOH B 73 473 474 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . D 2 81.762 -31.511 -20.853 1 41.85 ? C1 MPD 302 A 1 
HETATM 2 C C2 MPD . . . D 2 82.756 -30.541 -21.35 1 46.1 ? C2 MPD 302 A 1 
HETATM 3 O O2 MPD . . . D 2 83.038 -29.768 -20.209 1 54.42 ? O2 MPD 302 A 1 
HETATM 4 C CM MPD . . . D 2 83.989 -31.255 -21.84 1 46.81 ? CM MPD 302 A 1 
HETATM 5 C C3 MPD . . . D 2 82.275 -29.593 -22.417 1 41.43 ? C3 MPD 302 A 1 
HETATM 6 C C4 MPD . . . D 2 80.853 -29.118 -22.273 1 37.79 ? C4 MPD 302 A 1 
HETATM 7 O O4 MPD . . . D 2 80.524 -29.081 -20.908 1 39.16 ? O4 MPD 302 A 1 
HETATM 8 C C5 MPD . . . D 2 80.806 -27.736 -22.825 1 30.61 ? C5 MPD 302 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
#