data_4W7P # _model_server_result.job_id LK5oKZZLZpiAagkcIOvp0A _model_server_result.datetime_utc '2024-11-18 03:39:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4w7p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 4W7P # _exptl.entry_id 4W7P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 333.39 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~1~-[2-(1H-indazol-5-yl)pyrido[3,4-d]pyrimidin-4-yl]-2-methylpropane-1,2-diamine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.59 _cell.angle_gamma 90 _cell.entry_id 4W7P _cell.length_a 61.545 _cell.length_b 179.659 _cell.length_c 89.269 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4W7P _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 A,B,C,D,E,F,G,H,I,J,K,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C18 H19 N7' _chem_comp.formula_weight 333.39 _chem_comp.id 3J7 _chem_comp.mon_nstd_flag . _chem_comp.name N~1~-[2-(1H-indazol-5-yl)pyrido[3,4-d]pyrimidin-4-yl]-2-methylpropane-1,2-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 3J7 doub 1 n y C1 C2 3J7 sing 2 n y C1 H1 3J7 sing 3 n n C2 C5 3J7 doub 4 n y C2 H2 3J7 sing 5 n n C3 C4 3J7 doub 6 n y C3 H3 3J7 sing 7 n n C11 C10 3J7 doub 8 n y C11 H4 3J7 sing 9 n n C12 N5 3J7 sing 10 n y C13 C12 3J7 doub 11 n y C13 C14 3J7 sing 12 n y C14 N4 3J7 doub 13 n y C14 H5 3J7 sing 14 n n C15 C16 3J7 sing 15 n n C15 H6 3J7 sing 16 n n C15 H7 3J7 sing 17 n n C16 C17 3J7 sing 18 n n C16 C18 3J7 sing 19 n n C17 H8 3J7 sing 20 n n C17 H9 3J7 sing 21 n n C17 H10 3J7 sing 22 n n C18 H11 3J7 sing 23 n n C18 H12 3J7 sing 24 n n C18 H13 3J7 sing 25 n n N1 C3 3J7 sing 26 n y C4 N3 3J7 sing 27 n y C5 C4 3J7 sing 28 n y C5 C6 3J7 sing 29 n y C6 N2 3J7 doub 30 n y N2 C7 3J7 sing 31 n y C7 C8 3J7 sing 32 n n N3 C7 3J7 doub 33 n y C8 C11 3J7 sing 34 n y C8 C9 3J7 doub 35 n y C9 C13 3J7 sing 36 n y C9 H14 3J7 sing 37 n n C10 C12 3J7 sing 38 n y C10 H15 3J7 sing 39 n n N5 N4 3J7 sing 40 n y N6 C6 3J7 sing 41 n n N6 C15 3J7 sing 42 n n N6 H17 3J7 sing 43 n n N7 C16 3J7 sing 44 n n N7 H18 3J7 sing 45 n n N7 H19 3J7 sing 46 n n N5 H191 3J7 sing 47 n n # _atom_sites.entry_id 4W7P _atom_sites.fract_transf_matrix[1][1] 0.016248 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004229 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005566 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011575 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 3J7 A 1 501 1 3J7 LI1 . F 2 3J7 B 1 501 1 3J7 LI1 . G 2 3J7 C 1 501 1 3J7 LI1 . H 2 3J7 D 1 501 1 3J7 LI1 . I 3 HOH A 1 601 34 HOH HOH . I 3 HOH A 2 602 6 HOH HOH . I 3 HOH A 3 603 14 HOH HOH . I 3 HOH A 4 604 16 HOH HOH . I 3 HOH A 5 605 24 HOH HOH . J 3 HOH B 1 601 31 HOH HOH . J 3 HOH B 2 602 2 HOH HOH . J 3 HOH B 3 603 1 HOH HOH . J 3 HOH B 4 604 8 HOH HOH . J 3 HOH B 5 605 19 HOH HOH . J 3 HOH B 6 606 28 HOH HOH . J 3 HOH B 7 607 29 HOH HOH . J 3 HOH B 8 608 32 HOH HOH . K 3 HOH C 1 601 3 HOH HOH . K 3 HOH C 2 602 5 HOH HOH . K 3 HOH C 3 603 9 HOH HOH . K 3 HOH C 4 604 10 HOH HOH . K 3 HOH C 5 605 11 HOH HOH . K 3 HOH C 6 606 12 HOH HOH . K 3 HOH C 7 607 13 HOH HOH . K 3 HOH C 8 608 17 HOH HOH . K 3 HOH C 9 609 27 HOH HOH . K 3 HOH C 10 610 30 HOH HOH . K 3 HOH C 11 611 33 HOH HOH . L 3 HOH D 1 601 35 HOH HOH . L 3 HOH D 2 602 7 HOH HOH . L 3 HOH D 3 603 36 HOH HOH . L 3 HOH D 4 604 4 HOH HOH . L 3 HOH D 5 605 15 HOH HOH . L 3 HOH D 6 606 18 HOH HOH . L 3 HOH D 7 607 20 HOH HOH . L 3 HOH D 8 608 21 HOH HOH . L 3 HOH D 9 609 22 HOH HOH . L 3 HOH D 10 610 23 HOH HOH . L 3 HOH D 11 611 25 HOH HOH . L 3 HOH D 12 612 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3J7 . . . E 2 -13.896 42.656 -9.537 1 42.94 ? C1 3J7 501 A 1 HETATM 2 C C2 3J7 . . . E 2 -14.212 43.815 -8.796 1 43.12 ? C2 3J7 501 A 1 HETATM 3 C C3 3J7 . . . E 2 -14.495 41.24 -7.76 1 44.25 ? C3 3J7 501 A 1 HETATM 4 C C11 3J7 . . . E 2 -16.294 41.708 -2.954 1 44.66 ? C11 3J7 501 A 1 HETATM 5 C C12 3J7 . . . E 2 -17.469 42.674 -1.04 1 43.54 ? C12 3J7 501 A 1 HETATM 6 C C13 3J7 . . . E 2 -17.514 43.965 -1.664 1 43.52 ? C13 3J7 501 A 1 HETATM 7 C C14 3J7 . . . E 2 -18.209 44.796 -0.744 1 40.11 ? C14 3J7 501 A 1 HETATM 8 C C15 3J7 . . . E 2 -15.645 47.174 -6.337 1 44.08 ? C15 3J7 501 A 1 HETATM 9 C C16 3J7 . . . E 2 -14.696 47.96 -5.379 1 45.88 ? C16 3J7 501 A 1 HETATM 10 C C17 3J7 . . . E 2 -15.144 49.388 -5.049 1 45.84 ? C17 3J7 501 A 1 HETATM 11 C C18 3J7 . . . E 2 -14.457 47.225 -4.051 1 47.08 ? C18 3J7 501 A 1 HETATM 12 N N1 3J7 . . . E 2 -14.046 41.4 -9.037 1 44.16 ? N1 3J7 501 A 1 HETATM 13 C C4 3J7 . . . E 2 -14.857 42.323 -6.92 1 43.81 ? C4 3J7 501 A 1 HETATM 14 C C5 3J7 . . . E 2 -14.688 43.646 -7.458 1 43.98 ? C5 3J7 501 A 1 HETATM 15 C C6 3J7 . . . E 2 -15.067 44.715 -6.597 1 44.79 ? C6 3J7 501 A 1 HETATM 16 N N2 3J7 . . . E 2 -15.528 44.453 -5.36 1 47.34 ? N2 3J7 501 A 1 HETATM 17 C C7 3J7 . . . E 2 -15.668 43.186 -4.942 1 46.22 ? C7 3J7 501 A 1 HETATM 18 N N3 3J7 . . . E 2 -15.347 42.111 -5.68 1 44.21 ? N3 3J7 501 A 1 HETATM 19 C C8 3J7 . . . E 2 -16.259 42.995 -3.59 1 45.73 ? C8 3J7 501 A 1 HETATM 20 C C9 3J7 . . . E 2 -16.905 44.106 -2.945 1 45.77 ? C9 3J7 501 A 1 HETATM 21 C C10 3J7 . . . E 2 -16.881 41.544 -1.668 1 44.03 ? C10 3J7 501 A 1 HETATM 22 N N4 3J7 . . . E 2 -18.564 44.13 0.328 1 38.96 ? N4 3J7 501 A 1 HETATM 23 N N5 3J7 . . . E 2 -18.122 42.872 0.156 1 39.36 ? N5 3J7 501 A 1 HETATM 24 N N6 3J7 . . . E 2 -14.988 46.058 -7.013 1 43.34 ? N6 3J7 501 A 1 HETATM 25 N N7 3J7 . . . E 2 -13.419 48.113 -6.034 1 43.5 ? N7 3J7 501 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #