data_4W7P
#
_model_server_result.job_id            YPsdN4KlEy8DW6JxFetr1A 
_model_server_result.datetime_utc      '2024-11-18 03:35:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4w7p 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":501}' 
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_entry.id    4W7P 
#
_exptl.entry_id    4W7P 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              333.39 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~1~-[2-(1H-indazol-5-yl)pyrido[3,4-d]pyrimidin-4-yl]-2-methylpropane-1,2-diamine 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          104.59 
_cell.angle_gamma         90 
_cell.entry_id            4W7P 
_cell.length_a            61.545 
_cell.length_b            179.659 
_cell.length_c            89.269 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 4W7P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
A,B,C,D,E,F,G,H,I,J,K,L 3 1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C18 H19 N7' 
_chem_comp.formula_weight    333.39 
_chem_comp.id                3J7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~1~-[2-(1H-indazol-5-yl)pyrido[3,4-d]pyrimidin-4-yl]-2-methylpropane-1,2-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N1 3J7 doub 1 n y 
C1 C2 3J7 sing 2 n y 
C1 H1 3J7 sing 3 n n 
C2 C5 3J7 doub 4 n y 
C2 H2 3J7 sing 5 n n 
C3 C4 3J7 doub 6 n y 
C3 H3 3J7 sing 7 n n 
C11 C10 3J7 doub 8 n y 
C11 H4 3J7 sing 9 n n 
C12 N5 3J7 sing 10 n y 
C13 C12 3J7 doub 11 n y 
C13 C14 3J7 sing 12 n y 
C14 N4 3J7 doub 13 n y 
C14 H5 3J7 sing 14 n n 
C15 C16 3J7 sing 15 n n 
C15 H6 3J7 sing 16 n n 
C15 H7 3J7 sing 17 n n 
C16 C17 3J7 sing 18 n n 
C16 C18 3J7 sing 19 n n 
C17 H8 3J7 sing 20 n n 
C17 H9 3J7 sing 21 n n 
C17 H10 3J7 sing 22 n n 
C18 H11 3J7 sing 23 n n 
C18 H12 3J7 sing 24 n n 
C18 H13 3J7 sing 25 n n 
N1 C3 3J7 sing 26 n y 
C4 N3 3J7 sing 27 n y 
C5 C4 3J7 sing 28 n y 
C5 C6 3J7 sing 29 n y 
C6 N2 3J7 doub 30 n y 
N2 C7 3J7 sing 31 n y 
C7 C8 3J7 sing 32 n n 
N3 C7 3J7 doub 33 n y 
C8 C11 3J7 sing 34 n y 
C8 C9 3J7 doub 35 n y 
C9 C13 3J7 sing 36 n y 
C9 H14 3J7 sing 37 n n 
C10 C12 3J7 sing 38 n y 
C10 H15 3J7 sing 39 n n 
N5 N4 3J7 sing 40 n y 
N6 C6 3J7 sing 41 n n 
N6 C15 3J7 sing 42 n n 
N6 H17 3J7 sing 43 n n 
N7 C16 3J7 sing 44 n n 
N7 H18 3J7 sing 45 n n 
N7 H19 3J7 sing 46 n n 
N5 H191 3J7 sing 47 n n 
#
_atom_sites.entry_id                     4W7P 
_atom_sites.fract_transf_matrix[1][1]    0.016248 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004229 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005566 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011575 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 3J7 A 1 501 1 3J7 LI1 . 
F 2 3J7 B 1 501 1 3J7 LI1 . 
G 2 3J7 C 1 501 1 3J7 LI1 . 
H 2 3J7 D 1 501 1 3J7 LI1 . 
I 3 HOH A 1 601 34 HOH HOH . 
I 3 HOH A 2 602 6 HOH HOH . 
I 3 HOH A 3 603 14 HOH HOH . 
I 3 HOH A 4 604 16 HOH HOH . 
I 3 HOH A 5 605 24 HOH HOH . 
J 3 HOH B 1 601 31 HOH HOH . 
J 3 HOH B 2 602 2 HOH HOH . 
J 3 HOH B 3 603 1 HOH HOH . 
J 3 HOH B 4 604 8 HOH HOH . 
J 3 HOH B 5 605 19 HOH HOH . 
J 3 HOH B 6 606 28 HOH HOH . 
J 3 HOH B 7 607 29 HOH HOH . 
J 3 HOH B 8 608 32 HOH HOH . 
K 3 HOH C 1 601 3 HOH HOH . 
K 3 HOH C 2 602 5 HOH HOH . 
K 3 HOH C 3 603 9 HOH HOH . 
K 3 HOH C 4 604 10 HOH HOH . 
K 3 HOH C 5 605 11 HOH HOH . 
K 3 HOH C 6 606 12 HOH HOH . 
K 3 HOH C 7 607 13 HOH HOH . 
K 3 HOH C 8 608 17 HOH HOH . 
K 3 HOH C 9 609 27 HOH HOH . 
K 3 HOH C 10 610 30 HOH HOH . 
K 3 HOH C 11 611 33 HOH HOH . 
L 3 HOH D 1 601 35 HOH HOH . 
L 3 HOH D 2 602 7 HOH HOH . 
L 3 HOH D 3 603 36 HOH HOH . 
L 3 HOH D 4 604 4 HOH HOH . 
L 3 HOH D 5 605 15 HOH HOH . 
L 3 HOH D 6 606 18 HOH HOH . 
L 3 HOH D 7 607 20 HOH HOH . 
L 3 HOH D 8 608 21 HOH HOH . 
L 3 HOH D 9 609 22 HOH HOH . 
L 3 HOH D 10 610 23 HOH HOH . 
L 3 HOH D 11 611 25 HOH HOH . 
L 3 HOH D 12 612 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 3J7 . . . H 2 -51.217 -11.447 26.623 1 47.99 ? C1 3J7 501 D 1 
HETATM 2 C C2 3J7 . . . H 2 -51.292 -12.589 27.442 1 50.71 ? C2 3J7 501 D 1 
HETATM 3 C C3 3J7 . . . H 2 -51.433 -10.007 28.438 1 48.59 ? C3 3J7 501 D 1 
HETATM 4 C C11 3J7 . . . H 2 -52.161 -10.396 33.561 1 41.3 ? C11 3J7 501 D 1 
HETATM 5 C C12 3J7 . . . H 2 -52.17 -11.393 35.783 1 40.94 ? C12 3J7 501 D 1 
HETATM 6 C C13 3J7 . . . H 2 -51.864 -12.687 35.261 1 41.86 ? C13 3J7 501 D 1 
HETATM 7 C C14 3J7 . . . H 2 -51.751 -13.551 36.389 1 38.94 ? C14 3J7 501 D 1 
HETATM 8 C C15 3J7 . . . H 2 -51.336 -15.851 30.482 1 44.47 ? C15 3J7 501 D 1 
HETATM 9 C C16 3J7 . . . H 2 -52.657 -16.536 30.948 1 41.43 ? C16 3J7 501 D 1 
HETATM 10 C C17 3J7 . . . H 2 -52.444 -17.952 31.502 1 38.79 ? C17 3J7 501 D 1 
HETATM 11 C C18 3J7 . . . H 2 -53.413 -15.659 31.96 1 41.85 ? C18 3J7 501 D 1 
HETATM 12 N N1 3J7 . . . H 2 -51.283 -10.186 27.108 1 46.75 ? N1 3J7 501 D 1 
HETATM 13 C C4 3J7 . . . H 2 -51.559 -11.065 29.37 1 49.06 ? C4 3J7 501 D 1 
HETATM 14 C C5 3J7 . . . H 2 -51.475 -12.391 28.844 1 50.76 ? C5 3J7 501 D 1 
HETATM 15 C C6 3J7 . . . H 2 -51.505 -13.43 29.813 1 50.02 ? C6 3J7 501 D 1 
HETATM 16 N N2 3J7 . . . H 2 -51.629 -13.132 31.115 1 50.95 ? N2 3J7 501 D 1 
HETATM 17 C C7 3J7 . . . H 2 -51.759 -11.867 31.519 1 47.66 ? C7 3J7 501 D 1 
HETATM 18 N N3 3J7 . . . H 2 -51.713 -10.825 30.689 1 47.71 ? N3 3J7 501 D 1 
HETATM 19 C C8 3J7 . . . H 2 -51.903 -11.669 32.987 1 44.2 ? C8 3J7 501 D 1 
HETATM 20 C C9 3J7 . . . H 2 -51.735 -12.796 33.856 1 44.83 ? C9 3J7 501 D 1 
HETATM 21 C C10 3J7 . . . H 2 -52.261 -10.247 34.961 1 41.86 ? C10 3J7 501 D 1 
HETATM 22 N N4 3J7 . . . H 2 -51.935 -12.881 37.501 1 39.5 ? N4 3J7 501 D 1 
HETATM 23 N N5 3J7 . . . H 2 -52.222 -11.601 37.14 1 38.25 ? N5 3J7 501 D 1 
HETATM 24 N N6 3J7 . . . H 2 -51.471 -14.796 29.466 1 46.64 ? N6 3J7 501 D 1 
HETATM 25 N N7 3J7 . . . H 2 -53.551 -16.689 29.829 1 39.26 ? N7 3J7 501 D 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           25 
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