data_4W86 # _model_server_result.job_id OD9pUmfSc5jipLM7-YoIvg _model_server_result.datetime_utc '2024-11-01 05:36:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4w86 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 4W86 # _exptl.entry_id 4W86 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4W86 _cell.length_a 96.95 _cell.length_b 96.95 _cell.length_c 95.785 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4W86 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 95 A GLY 186 1_555 A N MSE 96 A MSE 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 96 A MSE 187 1_555 A N TYR 97 A TYR 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C LEU 142 A LEU 233 1_555 A N MSE 143 A MSE 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 143 A MSE 234 1_555 A N PHE 144 A PHE 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A C GLY 146 A GLY 237 1_555 A N MSE 147 A MSE 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 147 A MSE 238 1_555 A N ASN 148 A ASN 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 A C ARG 151 A ARG 242 1_555 A N MSE 152 A MSE 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C MSE 152 A MSE 243 1_555 A N ALA 153 A ALA 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C ALA 172 A ALA 263 1_555 A N MSE 173 A MSE 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 A C MSE 173 A MSE 264 1_555 A N ASN 174 A ASN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 B C GLY 95 B GLY 186 1_555 B N MSE 96 B MSE 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 B C MSE 96 B MSE 187 1_555 B N TYR 97 B TYR 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 B C LEU 142 B LEU 233 1_555 B N MSE 143 B MSE 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 B C MSE 143 B MSE 234 1_555 B N PHE 144 B PHE 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale15 B C GLY 146 B GLY 237 1_555 B N MSE 147 B MSE 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 B C MSE 147 B MSE 238 1_555 B N ASN 148 B ASN 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale17 B C ARG 151 B ARG 242 1_555 B N MSE 152 B MSE 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 B C MSE 152 B MSE 243 1_555 B N ALA 153 B ALA 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 B C ALA 172 B ALA 263 1_555 B N MSE 173 B MSE 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale20 B C MSE 173 B MSE 264 1_555 B N ASN 174 B ASN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 E MG MG . A MG 503 1_555 I O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc2 E MG MG . A MG 503 1_555 I O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc3 E MG MG . A MG 503 1_555 I O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc4 E MG MG . A MG 503 1_555 I O HOH . A HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc5 E MG MG . A MG 503 1_555 J O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc6 E MG MG . A MG 503 1_555 J O HOH . B HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc7 I O HOH . A HOH 601 1_555 H MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc8 H MG MG . B MG 503 1_555 J O HOH . B HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc9 H MG MG . B MG 503 1_555 J O HOH . B HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc10 H MG MG . B MG 503 1_555 J O HOH . B HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc11 H MG MG . B MG 503 1_555 J O HOH . B HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc12 H MG MG . B MG 503 1_555 J O HOH . B HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BGC _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 BGC sing 70 n n C2 C1 BGC sing 71 n n C2 O2 BGC sing 72 n n C2 H2 BGC sing 73 n n C3 C4 BGC sing 74 n n C3 O3 BGC sing 75 n n C3 H3 BGC sing 76 n n C4 C5 BGC sing 77 n n C4 O4 BGC sing 78 n n C4 H4 BGC sing 79 n n C5 C6 BGC sing 80 n n C5 O5 BGC sing 81 n n C5 H5 BGC sing 82 n n C6 O6 BGC sing 83 n n C6 H61 BGC sing 84 n n C6 H62 BGC sing 85 n n C1 O1 BGC sing 86 n n C1 O5 BGC sing 87 n n C1 H1 BGC sing 88 n n O1 HO1 BGC sing 89 n n O2 HO2 BGC sing 90 n n O3 HO3 BGC sing 91 n n O4 HO4 BGC sing 92 n n O6 HO6 BGC sing 93 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BGC DGlcpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BGC b-D-glucopyranose 'COMMON NAME' GMML 1 BGC b-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BGC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4W86 _atom_sites.fract_transf_matrix[1][1] 0.010315 _atom_sites.fract_transf_matrix[1][2] 0.005955 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01191 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TRS A 1 501 1 TRS TRS . D 3 BGC A 1 502 1 BGC BGC . E 4 MG A 1 503 1 MG MG . F 2 TRS B 1 501 2 TRS TRS . G 3 BGC B 1 502 2 BGC BGC . H 4 MG B 1 503 2 MG MG . I 5 HOH A 1 601 41 HOH HOH . I 5 HOH A 2 602 21 HOH HOH . I 5 HOH A 3 603 27 HOH HOH . I 5 HOH A 4 604 30 HOH HOH . I 5 HOH A 5 605 25 HOH HOH . I 5 HOH A 6 606 29 HOH HOH . I 5 HOH A 7 607 3 HOH HOH . I 5 HOH A 8 608 4 HOH HOH . I 5 HOH A 9 609 8 HOH HOH . I 5 HOH A 10 610 12 HOH HOH . I 5 HOH A 11 611 13 HOH HOH . I 5 HOH A 12 612 14 HOH HOH . I 5 HOH A 13 613 16 HOH HOH . I 5 HOH A 14 614 17 HOH HOH . I 5 HOH A 15 615 18 HOH HOH . I 5 HOH A 16 616 20 HOH HOH . I 5 HOH A 17 617 23 HOH HOH . I 5 HOH A 18 618 31 HOH HOH . I 5 HOH A 19 619 45 HOH HOH . I 5 HOH A 20 620 46 HOH HOH . I 5 HOH A 21 621 47 HOH HOH . I 5 HOH A 22 622 52 HOH HOH . I 5 HOH A 23 623 53 HOH HOH . I 5 HOH A 24 624 55 HOH HOH . I 5 HOH A 25 625 57 HOH HOH . I 5 HOH A 26 626 61 HOH HOH . I 5 HOH A 27 627 62 HOH HOH . I 5 HOH A 28 628 63 HOH HOH . J 5 HOH B 1 601 32 HOH HOH . J 5 HOH B 2 602 36 HOH HOH . J 5 HOH B 3 603 38 HOH HOH . J 5 HOH B 4 604 22 HOH HOH . J 5 HOH B 5 605 50 HOH HOH . J 5 HOH B 6 606 40 HOH HOH . J 5 HOH B 7 607 39 HOH HOH . J 5 HOH B 8 608 1 HOH HOH . J 5 HOH B 9 609 2 HOH HOH . J 5 HOH B 10 610 5 HOH HOH . J 5 HOH B 11 611 6 HOH HOH . J 5 HOH B 12 612 7 HOH HOH . J 5 HOH B 13 613 9 HOH HOH . J 5 HOH B 14 614 10 HOH HOH . J 5 HOH B 15 615 11 HOH HOH . J 5 HOH B 16 616 15 HOH HOH . J 5 HOH B 17 617 19 HOH HOH . J 5 HOH B 18 618 24 HOH HOH . J 5 HOH B 19 619 26 HOH HOH . J 5 HOH B 20 620 28 HOH HOH . J 5 HOH B 21 621 33 HOH HOH . J 5 HOH B 22 622 34 HOH HOH . J 5 HOH B 23 623 35 HOH HOH . J 5 HOH B 24 624 37 HOH HOH . J 5 HOH B 25 625 42 HOH HOH . J 5 HOH B 26 626 43 HOH HOH . J 5 HOH B 27 627 44 HOH HOH . J 5 HOH B 28 628 48 HOH HOH . J 5 HOH B 29 629 49 HOH HOH . J 5 HOH B 30 630 51 HOH HOH . J 5 HOH B 31 631 54 HOH HOH . J 5 HOH B 32 632 56 HOH HOH . J 5 HOH B 33 633 58 HOH HOH . J 5 HOH B 34 634 59 HOH HOH . J 5 HOH B 35 635 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BGC . . . D 3 30.563 -29.189 -20.897 1 98.45 ? C2 BGC 502 A 1 HETATM 2 C C3 BGC . . . D 3 31.921 -28.684 -21.375 1 96.07 ? C3 BGC 502 A 1 HETATM 3 C C4 BGC . . . D 3 31.842 -28.189 -22.817 1 94.96 ? C4 BGC 502 A 1 HETATM 4 C C5 BGC . . . D 3 30.589 -27.322 -23.03 1 94.31 ? C5 BGC 502 A 1 HETATM 5 C C6 BGC . . . D 3 30.548 -26.218 -24.096 1 92.94 ? C6 BGC 502 A 1 HETATM 6 C C1 BGC . . . D 3 29.492 -28.111 -21.073 1 97.53 ? C1 BGC 502 A 1 HETATM 7 O O1 BGC . . . D 3 28.233 -28.56 -20.553 1 96.98 ? O1 BGC 502 A 1 HETATM 8 O O2 BGC . . . D 3 30.656 -29.588 -19.521 1 101.73 ? O2 BGC 502 A 1 HETATM 9 O O3 BGC . . . D 3 32.884 -29.74 -21.277 1 94.57 ? O3 BGC 502 A 1 HETATM 10 O O4 BGC . . . D 3 33.029 -27.458 -23.14 1 93.71 ? O4 BGC 502 A 1 HETATM 11 O O5 BGC . . . D 3 29.356 -27.8 -22.461 1 95.22 ? O5 BGC 502 A 1 HETATM 12 O O6 BGC . . . D 3 30.655 -24.928 -23.483 1 91.18 ? O6 BGC 502 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #