data_4W89 # _model_server_result.job_id tgwJnfCl4fp1o2yGJGGRxw _model_server_result.datetime_utc '2024-11-01 05:25:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4w89 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 4W89 # _exptl.entry_id 4W89 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4W89 _cell.length_a 96.704 _cell.length_b 96.704 _cell.length_c 95.719 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4W89 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G 1 1 B,D,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 BGC GLC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BGC BGC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC E 2 CTR 2 n C BGC 2 C 2 BGC E 2 CTR 2 n C BGC 3 C 3 BGC E 2 CTR 2 n D GLC 1 D 1 GLC E 1 CTR 2 n D BGC 2 D 2 BGC E 1 CTR 2 n D BGC 3 D 3 BGC E 1 CTR # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O4 GLC . C GLC 1 1_555 C C1 BGC . C BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 sing covale ? covale2 C O4 BGC . C BGC 2 1_555 C C1 BGC . C BGC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 sing covale ? covale3 D O4 GLC . D GLC 1 1_555 D C1 BGC . D BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 sing covale ? covale4 D O4 BGC . D BGC 2 1_555 D C1 BGC . D BGC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 sing metalc ? metalc1 E MG MG . A MG 501 1_555 G O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc2 E MG MG . A MG 501 1_555 G O HOH . A HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc3 E MG MG . A MG 501 1_555 G O HOH . A HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc4 E MG MG . A MG 501 1_555 G O HOH . A HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc5 E MG MG . A MG 501 1_555 H O HOH . B HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc6 E MG MG . A MG 501 1_555 H O HOH . B HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc7 G O HOH . A HOH 620 1_555 F MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc8 G O HOH . A HOH 621 1_555 F MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc9 F MG MG . B MG 501 1_555 H O HOH . B HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc10 F MG MG . B MG 501 1_555 H O HOH . B HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? metalc ? metalc11 F MG MG . B MG 501 1_555 H O HOH . B HOH 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc12 F MG MG . B MG 501 1_555 H O HOH . B HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4W89 _atom_sites.fract_transf_matrix[1][1] 0.010341 _atom_sites.fract_transf_matrix[1][2] 0.00597 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011941 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 501 2 MG MG . F 3 MG B 1 501 1 MG MG . G 4 HOH A 1 601 362 HOH HOH . G 4 HOH A 2 602 328 HOH HOH . G 4 HOH A 3 603 361 HOH HOH . G 4 HOH A 4 604 8 HOH HOH . G 4 HOH A 5 605 367 HOH HOH . G 4 HOH A 6 606 346 HOH HOH . G 4 HOH A 7 607 364 HOH HOH . G 4 HOH A 8 608 317 HOH HOH . G 4 HOH A 9 609 45 HOH HOH . G 4 HOH A 10 610 73 HOH HOH . G 4 HOH A 11 611 95 HOH HOH . G 4 HOH A 12 612 160 HOH HOH . G 4 HOH A 13 613 178 HOH HOH . G 4 HOH A 14 614 195 HOH HOH . G 4 HOH A 15 615 232 HOH HOH . G 4 HOH A 16 616 315 HOH HOH . G 4 HOH A 17 617 325 HOH HOH . G 4 HOH A 18 618 326 HOH HOH . G 4 HOH A 19 619 327 HOH HOH . G 4 HOH A 20 620 332 HOH HOH . G 4 HOH A 21 621 333 HOH HOH . G 4 HOH A 22 622 336 HOH HOH . G 4 HOH A 23 623 337 HOH HOH . G 4 HOH A 24 624 340 HOH HOH . G 4 HOH A 25 625 341 HOH HOH . G 4 HOH A 26 626 344 HOH HOH . G 4 HOH A 27 627 349 HOH HOH . G 4 HOH A 28 628 352 HOH HOH . G 4 HOH A 29 629 355 HOH HOH . G 4 HOH A 30 630 357 HOH HOH . G 4 HOH A 31 631 360 HOH HOH . G 4 HOH A 32 632 368 HOH HOH . G 4 HOH A 33 633 369 HOH HOH . G 4 HOH A 34 634 370 HOH HOH . G 4 HOH A 35 635 373 HOH HOH . G 4 HOH A 36 636 377 HOH HOH . G 4 HOH A 37 637 378 HOH HOH . G 4 HOH A 38 638 379 HOH HOH . G 4 HOH A 39 639 380 HOH HOH . G 4 HOH A 40 640 382 HOH HOH . G 4 HOH A 41 641 386 HOH HOH . G 4 HOH A 42 642 388 HOH HOH . H 4 HOH B 1 601 354 HOH HOH . H 4 HOH B 2 602 347 HOH HOH . H 4 HOH B 3 603 358 HOH HOH . H 4 HOH B 4 604 363 HOH HOH . H 4 HOH B 5 605 194 HOH HOH . H 4 HOH B 6 606 331 HOH HOH . H 4 HOH B 7 607 329 HOH HOH . H 4 HOH B 8 608 2 HOH HOH . H 4 HOH B 9 609 31 HOH HOH . H 4 HOH B 10 610 35 HOH HOH . H 4 HOH B 11 611 42 HOH HOH . H 4 HOH B 12 612 44 HOH HOH . H 4 HOH B 13 613 55 HOH HOH . H 4 HOH B 14 614 66 HOH HOH . H 4 HOH B 15 615 71 HOH HOH . H 4 HOH B 16 616 94 HOH HOH . H 4 HOH B 17 617 105 HOH HOH . H 4 HOH B 18 618 117 HOH HOH . H 4 HOH B 19 619 129 HOH HOH . H 4 HOH B 20 620 140 HOH HOH . H 4 HOH B 21 621 142 HOH HOH . H 4 HOH B 22 622 170 HOH HOH . H 4 HOH B 23 623 243 HOH HOH . H 4 HOH B 24 624 321 HOH HOH . H 4 HOH B 25 625 323 HOH HOH . H 4 HOH B 26 626 324 HOH HOH . H 4 HOH B 27 627 330 HOH HOH . H 4 HOH B 28 628 334 HOH HOH . H 4 HOH B 29 629 335 HOH HOH . H 4 HOH B 30 630 338 HOH HOH . H 4 HOH B 31 631 339 HOH HOH . H 4 HOH B 32 632 342 HOH HOH . H 4 HOH B 33 633 343 HOH HOH . H 4 HOH B 34 634 345 HOH HOH . H 4 HOH B 35 635 348 HOH HOH . H 4 HOH B 36 636 350 HOH HOH . H 4 HOH B 37 637 351 HOH HOH . H 4 HOH B 38 638 353 HOH HOH . H 4 HOH B 39 639 359 HOH HOH . H 4 HOH B 40 640 365 HOH HOH . H 4 HOH B 41 641 366 HOH HOH . H 4 HOH B 42 642 371 HOH HOH . H 4 HOH B 43 643 372 HOH HOH . H 4 HOH B 44 644 374 HOH HOH . H 4 HOH B 45 645 375 HOH HOH . H 4 HOH B 46 646 376 HOH HOH . H 4 HOH B 47 647 381 HOH HOH . H 4 HOH B 48 648 383 HOH HOH . H 4 HOH B 49 649 384 HOH HOH . H 4 HOH B 50 650 385 HOH HOH . H 4 HOH B 51 651 387 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 24.442 _atom_site.Cartn_y 20.005 _atom_site.Cartn_z 7.879 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 55.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #