data_4W8P # _model_server_result.job_id GJtQjxJ8HK7l6tv34FrluA _model_server_result.datetime_utc '2024-12-02 16:11:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4w8p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1702}' # _entry.id 4W8P # _exptl.entry_id 4W8P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4W8P _cell.length_a 59.722 _cell.length_b 105.884 _cell.length_c 49.027 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4W8P _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4W8P _atom_sites.fract_transf_matrix[1][1] 0.016744 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 1701 1 EDO EDO . D 3 EDO A 1 1702 2 EDO EDO . E 4 HOH A 1 1801 122 HOH HOH . E 4 HOH A 2 1802 243 HOH HOH . E 4 HOH A 3 1803 24 HOH HOH . E 4 HOH A 4 1804 6 HOH HOH . E 4 HOH A 5 1805 205 HOH HOH . E 4 HOH A 6 1806 240 HOH HOH . E 4 HOH A 7 1807 226 HOH HOH . E 4 HOH A 8 1808 27 HOH HOH . E 4 HOH A 9 1809 41 HOH HOH . E 4 HOH A 10 1810 197 HOH HOH . E 4 HOH A 11 1811 102 HOH HOH . E 4 HOH A 12 1812 70 HOH HOH . E 4 HOH A 13 1813 229 HOH HOH . E 4 HOH A 14 1814 268 HOH HOH . E 4 HOH A 15 1815 25 HOH HOH . E 4 HOH A 16 1816 247 HOH HOH . E 4 HOH A 17 1817 218 HOH HOH . E 4 HOH A 18 1818 216 HOH HOH . E 4 HOH A 19 1819 227 HOH HOH . E 4 HOH A 20 1820 168 HOH HOH . E 4 HOH A 21 1821 53 HOH HOH . E 4 HOH A 22 1822 186 HOH HOH . E 4 HOH A 23 1823 148 HOH HOH . E 4 HOH A 24 1824 79 HOH HOH . E 4 HOH A 25 1825 39 HOH HOH . E 4 HOH A 26 1826 141 HOH HOH . E 4 HOH A 27 1827 281 HOH HOH . E 4 HOH A 28 1828 189 HOH HOH . E 4 HOH A 29 1829 49 HOH HOH . E 4 HOH A 30 1830 167 HOH HOH . E 4 HOH A 31 1831 23 HOH HOH . E 4 HOH A 32 1832 32 HOH HOH . E 4 HOH A 33 1833 280 HOH HOH . E 4 HOH A 34 1834 139 HOH HOH . E 4 HOH A 35 1835 233 HOH HOH . E 4 HOH A 36 1836 94 HOH HOH . E 4 HOH A 37 1837 34 HOH HOH . E 4 HOH A 38 1838 283 HOH HOH . E 4 HOH A 39 1839 33 HOH HOH . E 4 HOH A 40 1840 134 HOH HOH . E 4 HOH A 41 1841 98 HOH HOH . E 4 HOH A 42 1842 255 HOH HOH . E 4 HOH A 43 1843 65 HOH HOH . E 4 HOH A 44 1844 10 HOH HOH . E 4 HOH A 45 1845 26 HOH HOH . E 4 HOH A 46 1846 47 HOH HOH . E 4 HOH A 47 1847 165 HOH HOH . E 4 HOH A 48 1848 211 HOH HOH . E 4 HOH A 49 1849 63 HOH HOH . E 4 HOH A 50 1850 116 HOH HOH . E 4 HOH A 51 1851 36 HOH HOH . E 4 HOH A 52 1852 95 HOH HOH . E 4 HOH A 53 1853 73 HOH HOH . E 4 HOH A 54 1854 16 HOH HOH . E 4 HOH A 55 1855 180 HOH HOH . E 4 HOH A 56 1856 222 HOH HOH . E 4 HOH A 57 1857 164 HOH HOH . E 4 HOH A 58 1858 119 HOH HOH . E 4 HOH A 59 1859 35 HOH HOH . E 4 HOH A 60 1860 99 HOH HOH . E 4 HOH A 61 1861 137 HOH HOH . E 4 HOH A 62 1862 261 HOH HOH . E 4 HOH A 63 1863 58 HOH HOH . E 4 HOH A 64 1864 172 HOH HOH . E 4 HOH A 65 1865 246 HOH HOH . E 4 HOH A 66 1866 169 HOH HOH . E 4 HOH A 67 1867 121 HOH HOH . E 4 HOH A 68 1868 62 HOH HOH . E 4 HOH A 69 1869 237 HOH HOH . E 4 HOH A 70 1870 279 HOH HOH . E 4 HOH A 71 1871 126 HOH HOH . E 4 HOH A 72 1872 273 HOH HOH . E 4 HOH A 73 1873 269 HOH HOH . E 4 HOH A 74 1874 284 HOH HOH . E 4 HOH A 75 1875 140 HOH HOH . E 4 HOH A 76 1876 241 HOH HOH . E 4 HOH A 77 1877 282 HOH HOH . E 4 HOH A 78 1878 67 HOH HOH . E 4 HOH A 79 1879 295 HOH HOH . E 4 HOH A 80 1880 267 HOH HOH . E 4 HOH A 81 1881 242 HOH HOH . E 4 HOH A 82 1882 257 HOH HOH . E 4 HOH A 83 1883 194 HOH HOH . E 4 HOH A 84 1884 231 HOH HOH . E 4 HOH A 85 1885 133 HOH HOH . E 4 HOH A 86 1886 248 HOH HOH . E 4 HOH A 87 1887 76 HOH HOH . E 4 HOH A 88 1888 249 HOH HOH . E 4 HOH A 89 1889 224 HOH HOH . E 4 HOH A 90 1890 272 HOH HOH . E 4 HOH A 91 1891 207 HOH HOH . E 4 HOH A 92 1892 214 HOH HOH . E 4 HOH A 93 1893 60 HOH HOH . E 4 HOH A 94 1894 155 HOH HOH . E 4 HOH A 95 1895 199 HOH HOH . E 4 HOH A 96 1896 230 HOH HOH . E 4 HOH A 97 1897 265 HOH HOH . E 4 HOH A 98 1898 1 HOH HOH . E 4 HOH A 99 1899 2 HOH HOH . E 4 HOH A 100 1900 3 HOH HOH . E 4 HOH A 101 1901 5 HOH HOH . E 4 HOH A 102 1902 7 HOH HOH . E 4 HOH A 103 1903 8 HOH HOH . E 4 HOH A 104 1904 9 HOH HOH . E 4 HOH A 105 1905 11 HOH HOH . E 4 HOH A 106 1906 15 HOH HOH . E 4 HOH A 107 1907 17 HOH HOH . E 4 HOH A 108 1908 19 HOH HOH . E 4 HOH A 109 1909 22 HOH HOH . E 4 HOH A 110 1910 28 HOH HOH . E 4 HOH A 111 1911 29 HOH HOH . E 4 HOH A 112 1912 30 HOH HOH . E 4 HOH A 113 1913 37 HOH HOH . E 4 HOH A 114 1914 40 HOH HOH . E 4 HOH A 115 1915 42 HOH HOH . E 4 HOH A 116 1916 44 HOH HOH . E 4 HOH A 117 1917 45 HOH HOH . E 4 HOH A 118 1918 46 HOH HOH . E 4 HOH A 119 1919 48 HOH HOH . E 4 HOH A 120 1920 50 HOH HOH . E 4 HOH A 121 1921 51 HOH HOH . E 4 HOH A 122 1922 52 HOH HOH . E 4 HOH A 123 1923 54 HOH HOH . E 4 HOH A 124 1924 56 HOH HOH . E 4 HOH A 125 1925 59 HOH HOH . E 4 HOH A 126 1926 61 HOH HOH . E 4 HOH A 127 1927 64 HOH HOH . E 4 HOH A 128 1928 66 HOH HOH . E 4 HOH A 129 1929 68 HOH HOH . E 4 HOH A 130 1930 69 HOH HOH . E 4 HOH A 131 1931 71 HOH HOH . E 4 HOH A 132 1932 72 HOH HOH . E 4 HOH A 133 1933 74 HOH HOH . E 4 HOH A 134 1934 75 HOH HOH . E 4 HOH A 135 1935 77 HOH HOH . E 4 HOH A 136 1936 78 HOH HOH . E 4 HOH A 137 1937 80 HOH HOH . E 4 HOH A 138 1938 81 HOH HOH . E 4 HOH A 139 1939 83 HOH HOH . E 4 HOH A 140 1940 84 HOH HOH . E 4 HOH A 141 1941 85 HOH HOH . E 4 HOH A 142 1942 86 HOH HOH . E 4 HOH A 143 1943 87 HOH HOH . E 4 HOH A 144 1944 88 HOH HOH . E 4 HOH A 145 1945 89 HOH HOH . E 4 HOH A 146 1946 90 HOH HOH . E 4 HOH A 147 1947 91 HOH HOH . E 4 HOH A 148 1948 92 HOH HOH . E 4 HOH A 149 1949 93 HOH HOH . E 4 HOH A 150 1950 96 HOH HOH . E 4 HOH A 151 1951 97 HOH HOH . E 4 HOH A 152 1952 100 HOH HOH . E 4 HOH A 153 1953 101 HOH HOH . E 4 HOH A 154 1954 103 HOH HOH . E 4 HOH A 155 1955 104 HOH HOH . E 4 HOH A 156 1956 105 HOH HOH . E 4 HOH A 157 1957 106 HOH HOH . E 4 HOH A 158 1958 107 HOH HOH . E 4 HOH A 159 1959 108 HOH HOH . E 4 HOH A 160 1960 109 HOH HOH . E 4 HOH A 161 1961 111 HOH HOH . E 4 HOH A 162 1962 113 HOH HOH . E 4 HOH A 163 1963 115 HOH HOH . E 4 HOH A 164 1964 117 HOH HOH . E 4 HOH A 165 1965 120 HOH HOH . E 4 HOH A 166 1966 123 HOH HOH . E 4 HOH A 167 1967 124 HOH HOH . E 4 HOH A 168 1968 125 HOH HOH . E 4 HOH A 169 1969 127 HOH HOH . E 4 HOH A 170 1970 128 HOH HOH . E 4 HOH A 171 1971 129 HOH HOH . E 4 HOH A 172 1972 130 HOH HOH . E 4 HOH A 173 1973 131 HOH HOH . E 4 HOH A 174 1974 132 HOH HOH . E 4 HOH A 175 1975 135 HOH HOH . E 4 HOH A 176 1976 136 HOH HOH . E 4 HOH A 177 1977 138 HOH HOH . E 4 HOH A 178 1978 142 HOH HOH . E 4 HOH A 179 1979 143 HOH HOH . E 4 HOH A 180 1980 144 HOH HOH . E 4 HOH A 181 1981 145 HOH HOH . E 4 HOH A 182 1982 146 HOH HOH . E 4 HOH A 183 1983 147 HOH HOH . E 4 HOH A 184 1984 150 HOH HOH . E 4 HOH A 185 1985 152 HOH HOH . E 4 HOH A 186 1986 153 HOH HOH . E 4 HOH A 187 1987 154 HOH HOH . E 4 HOH A 188 1988 156 HOH HOH . E 4 HOH A 189 1989 157 HOH HOH . E 4 HOH A 190 1990 158 HOH HOH . E 4 HOH A 191 1991 159 HOH HOH . E 4 HOH A 192 1992 160 HOH HOH . E 4 HOH A 193 1993 162 HOH HOH . E 4 HOH A 194 1994 163 HOH HOH . E 4 HOH A 195 1995 166 HOH HOH . E 4 HOH A 196 1996 170 HOH HOH . E 4 HOH A 197 1997 171 HOH HOH . E 4 HOH A 198 1998 173 HOH HOH . E 4 HOH A 199 1999 174 HOH HOH . E 4 HOH A 200 2000 176 HOH HOH . E 4 HOH A 201 2001 177 HOH HOH . E 4 HOH A 202 2002 178 HOH HOH . E 4 HOH A 203 2003 179 HOH HOH . E 4 HOH A 204 2004 182 HOH HOH . E 4 HOH A 205 2005 183 HOH HOH . E 4 HOH A 206 2006 184 HOH HOH . E 4 HOH A 207 2007 185 HOH HOH . E 4 HOH A 208 2008 187 HOH HOH . E 4 HOH A 209 2009 188 HOH HOH . E 4 HOH A 210 2010 190 HOH HOH . E 4 HOH A 211 2011 191 HOH HOH . E 4 HOH A 212 2012 192 HOH HOH . E 4 HOH A 213 2013 193 HOH HOH . E 4 HOH A 214 2014 196 HOH HOH . E 4 HOH A 215 2015 198 HOH HOH . E 4 HOH A 216 2016 200 HOH HOH . E 4 HOH A 217 2017 201 HOH HOH . E 4 HOH A 218 2018 202 HOH HOH . E 4 HOH A 219 2019 203 HOH HOH . E 4 HOH A 220 2020 204 HOH HOH . E 4 HOH A 221 2021 206 HOH HOH . E 4 HOH A 222 2022 208 HOH HOH . E 4 HOH A 223 2023 209 HOH HOH . E 4 HOH A 224 2024 210 HOH HOH . E 4 HOH A 225 2025 212 HOH HOH . E 4 HOH A 226 2026 213 HOH HOH . E 4 HOH A 227 2027 217 HOH HOH . E 4 HOH A 228 2028 219 HOH HOH . E 4 HOH A 229 2029 220 HOH HOH . E 4 HOH A 230 2030 221 HOH HOH . E 4 HOH A 231 2031 223 HOH HOH . E 4 HOH A 232 2032 225 HOH HOH . E 4 HOH A 233 2033 232 HOH HOH . E 4 HOH A 234 2034 234 HOH HOH . E 4 HOH A 235 2035 235 HOH HOH . E 4 HOH A 236 2036 236 HOH HOH . E 4 HOH A 237 2037 238 HOH HOH . E 4 HOH A 238 2038 239 HOH HOH . E 4 HOH A 239 2039 244 HOH HOH . E 4 HOH A 240 2040 245 HOH HOH . E 4 HOH A 241 2041 250 HOH HOH . E 4 HOH A 242 2042 251 HOH HOH . E 4 HOH A 243 2043 252 HOH HOH . E 4 HOH A 244 2044 253 HOH HOH . E 4 HOH A 245 2045 254 HOH HOH . E 4 HOH A 246 2046 256 HOH HOH . E 4 HOH A 247 2047 258 HOH HOH . E 4 HOH A 248 2048 259 HOH HOH . E 4 HOH A 249 2049 262 HOH HOH . E 4 HOH A 250 2050 263 HOH HOH . E 4 HOH A 251 2051 264 HOH HOH . E 4 HOH A 252 2052 271 HOH HOH . E 4 HOH A 253 2053 274 HOH HOH . E 4 HOH A 254 2054 275 HOH HOH . E 4 HOH A 255 2055 276 HOH HOH . E 4 HOH A 256 2056 277 HOH HOH . E 4 HOH A 257 2057 278 HOH HOH . E 4 HOH A 258 2058 285 HOH HOH . E 4 HOH A 259 2059 287 HOH HOH . E 4 HOH A 260 2060 288 HOH HOH . E 4 HOH A 261 2061 289 HOH HOH . E 4 HOH A 262 2062 290 HOH HOH . E 4 HOH A 263 2063 291 HOH HOH . E 4 HOH A 264 2064 292 HOH HOH . E 4 HOH A 265 2065 293 HOH HOH . E 4 HOH A 266 2066 294 HOH HOH . E 4 HOH A 267 2067 296 HOH HOH . E 4 HOH A 268 2068 297 HOH HOH . E 4 HOH A 269 2069 298 HOH HOH . E 4 HOH A 270 2070 299 HOH HOH . E 4 HOH A 271 2071 300 HOH HOH . E 4 HOH A 272 2072 301 HOH HOH . E 4 HOH A 273 2073 302 HOH HOH . E 4 HOH A 274 2074 303 HOH HOH . E 4 HOH A 275 2075 304 HOH HOH . F 4 HOH B 1 101 161 HOH HOH . F 4 HOH B 2 102 38 HOH HOH . F 4 HOH B 3 103 118 HOH HOH . F 4 HOH B 4 104 21 HOH HOH . F 4 HOH B 5 105 4 HOH HOH . F 4 HOH B 6 106 13 HOH HOH . F 4 HOH B 7 107 12 HOH HOH . F 4 HOH B 8 108 18 HOH HOH . F 4 HOH B 9 109 14 HOH HOH . F 4 HOH B 10 110 260 HOH HOH . F 4 HOH B 11 111 112 HOH HOH . F 4 HOH B 12 112 266 HOH HOH . F 4 HOH B 13 113 43 HOH HOH . F 4 HOH B 14 114 57 HOH HOH . F 4 HOH B 15 115 215 HOH HOH . F 4 HOH B 16 116 82 HOH HOH . F 4 HOH B 17 117 151 HOH HOH . F 4 HOH B 18 118 270 HOH HOH . F 4 HOH B 19 119 181 HOH HOH . F 4 HOH B 20 120 286 HOH HOH . F 4 HOH B 21 121 195 HOH HOH . F 4 HOH B 22 122 228 HOH HOH . F 4 HOH B 23 123 20 HOH HOH . F 4 HOH B 24 124 31 HOH HOH . F 4 HOH B 25 125 55 HOH HOH . F 4 HOH B 26 126 110 HOH HOH . F 4 HOH B 27 127 114 HOH HOH . F 4 HOH B 28 128 149 HOH HOH . F 4 HOH B 29 129 175 HOH HOH . F 4 HOH B 30 130 305 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 5.255 -35.86 -12.462 1 33.04 ? C1 EDO 1702 A 1 HETATM 2 O O1 EDO . . . D 3 4.464 -36.696 -13.316 1 32.32 ? O1 EDO 1702 A 1 HETATM 3 C C2 EDO . . . D 3 6.175 -36.742 -11.628 1 33.28 ? C2 EDO 1702 A 1 HETATM 4 O O2 EDO . . . D 3 5.391 -37.53 -10.728 1 35.06 ? O2 EDO 1702 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 4 #