data_4W9S # _model_server_result.job_id r5gOx63AX_iT8WRd2Zpcuw _model_server_result.datetime_utc '2025-01-10 11:02:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4w9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 4W9S # _exptl.entry_id 4W9S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.22 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-hydroxy-2-[4-(1H-tetrazol-5-yl)phenyl]pyrimidin-4(3H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4W9S _cell.length_a 87.986 _cell.length_b 101.637 _cell.length_c 66.512 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4W9S _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 78 A HIS 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc2 A OE1 GLU 117 A GLU 80 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc3 A OD2 ASP 145 A ASP 108 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc4 A OD1 ASP 145 A ASP 108 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc5 A OE2 GLU 156 A GLU 119 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc6 A O ILE 157 A ILE 120 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc7 B MN MN . A MN 301 1_555 E O01 3K1 . A 3K1 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc8 B MN MN . A MN 301 1_555 E O19 3K1 . A 3K1 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc9 C MN MN . A MN 302 1_555 E O01 3K1 . A 3K1 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc10 C MN MN . A MN 302 1_555 G O HOH . A HOH 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc11 C MN MN . A MN 302 1_555 G O HOH . A HOH 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc12 C MN MN . A MN 302 1_555 G O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? # _chem_comp.formula 'C11 H8 N6 O2' _chem_comp.formula_weight 256.22 _chem_comp.id 3K1 _chem_comp.mon_nstd_flag . _chem_comp.name 5-hydroxy-2-[4-(1H-tetrazol-5-yl)phenyl]pyrimidin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N14 N13 3K1 sing 1 n y N14 N15 3K1 doub 2 n y N13 C12 3K1 doub 3 n y N15 N16 3K1 sing 4 n y C12 N16 3K1 sing 5 n y C12 C09 3K1 sing 6 n n C10 C09 3K1 doub 7 n y C10 C11 3K1 sing 8 n y C09 C08 3K1 sing 9 n y C11 C06 3K1 doub 10 n y C08 C07 3K1 doub 11 n y C06 C07 3K1 sing 12 n y C06 C05 3K1 sing 13 n n N04 C05 3K1 doub 14 n n N04 C03 3K1 sing 15 n n C05 N17 3K1 sing 16 n n C03 C02 3K1 doub 17 n n N17 C18 3K1 sing 18 n n C02 C18 3K1 sing 19 n n C02 O01 3K1 sing 20 n n C18 O19 3K1 doub 21 n n O01 H011 3K1 sing 22 n n C03 H031 3K1 sing 23 n n C07 H071 3K1 sing 24 n n C08 H081 3K1 sing 25 n n C10 H101 3K1 sing 26 n n C11 H111 3K1 sing 27 n n N16 H161 3K1 sing 28 n n N17 H1 3K1 sing 29 n n # _atom_sites.entry_id 4W9S _atom_sites.fract_transf_matrix[1][1] 0.011365 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009839 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015035 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 301 MN MN . C 2 MN A 1 302 302 MN MN . D 3 SO4 A 1 303 305 SO4 SO4 . E 4 3K1 A 1 304 1 3K1 H42 . F 3 SO4 A 1 305 1 SO4 SO4 . G 5 HOH A 1 401 35 HOH HOH . G 5 HOH A 2 402 65 HOH HOH . G 5 HOH A 3 403 126 HOH HOH . G 5 HOH A 4 404 117 HOH HOH . G 5 HOH A 5 405 94 HOH HOH . G 5 HOH A 6 406 8 HOH HOH . G 5 HOH A 7 407 28 HOH HOH . G 5 HOH A 8 408 53 HOH HOH . G 5 HOH A 9 409 25 HOH HOH . G 5 HOH A 10 410 43 HOH HOH . G 5 HOH A 11 411 1 HOH HOH . G 5 HOH A 12 412 12 HOH HOH . G 5 HOH A 13 413 153 HOH HOH . G 5 HOH A 14 414 100 HOH HOH . G 5 HOH A 15 415 54 HOH HOH . G 5 HOH A 16 416 59 HOH HOH . G 5 HOH A 17 417 144 HOH HOH . G 5 HOH A 18 418 13 HOH HOH . G 5 HOH A 19 419 5 HOH HOH . G 5 HOH A 20 420 84 HOH HOH . G 5 HOH A 21 421 18 HOH HOH . G 5 HOH A 22 422 89 HOH HOH . G 5 HOH A 23 423 14 HOH HOH . G 5 HOH A 24 424 88 HOH HOH . G 5 HOH A 25 425 119 HOH HOH . G 5 HOH A 26 426 36 HOH HOH . G 5 HOH A 27 427 46 HOH HOH . G 5 HOH A 28 428 131 HOH HOH . G 5 HOH A 29 429 87 HOH HOH . G 5 HOH A 30 430 99 HOH HOH . G 5 HOH A 31 431 155 HOH HOH . G 5 HOH A 32 432 15 HOH HOH . G 5 HOH A 33 433 34 HOH HOH . G 5 HOH A 34 434 51 HOH HOH . G 5 HOH A 35 435 149 HOH HOH . G 5 HOH A 36 436 69 HOH HOH . G 5 HOH A 37 437 64 HOH HOH . G 5 HOH A 38 438 156 HOH HOH . G 5 HOH A 39 439 124 HOH HOH . G 5 HOH A 40 440 31 HOH HOH . G 5 HOH A 41 441 123 HOH HOH . G 5 HOH A 42 442 60 HOH HOH . G 5 HOH A 43 443 142 HOH HOH . G 5 HOH A 44 444 48 HOH HOH . G 5 HOH A 45 445 105 HOH HOH . G 5 HOH A 46 446 127 HOH HOH . G 5 HOH A 47 447 150 HOH HOH . G 5 HOH A 48 448 56 HOH HOH . G 5 HOH A 49 449 68 HOH HOH . G 5 HOH A 50 450 134 HOH HOH . G 5 HOH A 51 451 2 HOH HOH . G 5 HOH A 52 452 3 HOH HOH . G 5 HOH A 53 453 4 HOH HOH . G 5 HOH A 54 454 6 HOH HOH . G 5 HOH A 55 455 7 HOH HOH . G 5 HOH A 56 456 9 HOH HOH . G 5 HOH A 57 457 10 HOH HOH . G 5 HOH A 58 458 11 HOH HOH . G 5 HOH A 59 459 16 HOH HOH . G 5 HOH A 60 460 17 HOH HOH . G 5 HOH A 61 461 19 HOH HOH . G 5 HOH A 62 462 20 HOH HOH . G 5 HOH A 63 463 21 HOH HOH . G 5 HOH A 64 464 22 HOH HOH . G 5 HOH A 65 465 23 HOH HOH . G 5 HOH A 66 466 24 HOH HOH . G 5 HOH A 67 467 26 HOH HOH . G 5 HOH A 68 468 27 HOH HOH . G 5 HOH A 69 469 29 HOH HOH . G 5 HOH A 70 470 30 HOH HOH . G 5 HOH A 71 471 32 HOH HOH . G 5 HOH A 72 472 33 HOH HOH . G 5 HOH A 73 473 37 HOH HOH . G 5 HOH A 74 474 38 HOH HOH . G 5 HOH A 75 475 39 HOH HOH . G 5 HOH A 76 476 40 HOH HOH . G 5 HOH A 77 477 41 HOH HOH . G 5 HOH A 78 478 42 HOH HOH . G 5 HOH A 79 479 44 HOH HOH . G 5 HOH A 80 480 45 HOH HOH . G 5 HOH A 81 481 47 HOH HOH . G 5 HOH A 82 482 49 HOH HOH . G 5 HOH A 83 483 50 HOH HOH . G 5 HOH A 84 484 52 HOH HOH . G 5 HOH A 85 485 55 HOH HOH . G 5 HOH A 86 486 57 HOH HOH . G 5 HOH A 87 487 58 HOH HOH . G 5 HOH A 88 488 61 HOH HOH . G 5 HOH A 89 489 62 HOH HOH . G 5 HOH A 90 490 63 HOH HOH . G 5 HOH A 91 491 66 HOH HOH . G 5 HOH A 92 492 67 HOH HOH . G 5 HOH A 93 493 70 HOH HOH . G 5 HOH A 94 494 71 HOH HOH . G 5 HOH A 95 495 72 HOH HOH . G 5 HOH A 96 496 73 HOH HOH . G 5 HOH A 97 497 74 HOH HOH . G 5 HOH A 98 498 75 HOH HOH . G 5 HOH A 99 499 76 HOH HOH . G 5 HOH A 100 500 77 HOH HOH . G 5 HOH A 101 501 78 HOH HOH . G 5 HOH A 102 502 79 HOH HOH . G 5 HOH A 103 503 80 HOH HOH . G 5 HOH A 104 504 81 HOH HOH . G 5 HOH A 105 505 82 HOH HOH . G 5 HOH A 106 506 83 HOH HOH . G 5 HOH A 107 507 85 HOH HOH . G 5 HOH A 108 508 86 HOH HOH . G 5 HOH A 109 509 90 HOH HOH . G 5 HOH A 110 510 91 HOH HOH . G 5 HOH A 111 511 92 HOH HOH . G 5 HOH A 112 512 93 HOH HOH . G 5 HOH A 113 513 96 HOH HOH . G 5 HOH A 114 514 97 HOH HOH . G 5 HOH A 115 515 98 HOH HOH . G 5 HOH A 116 516 101 HOH HOH . G 5 HOH A 117 517 102 HOH HOH . G 5 HOH A 118 518 104 HOH HOH . G 5 HOH A 119 519 106 HOH HOH . G 5 HOH A 120 520 107 HOH HOH . G 5 HOH A 121 521 108 HOH HOH . G 5 HOH A 122 522 109 HOH HOH . G 5 HOH A 123 523 110 HOH HOH . G 5 HOH A 124 524 111 HOH HOH . G 5 HOH A 125 525 112 HOH HOH . G 5 HOH A 126 526 113 HOH HOH . G 5 HOH A 127 527 114 HOH HOH . G 5 HOH A 128 528 115 HOH HOH . G 5 HOH A 129 529 116 HOH HOH . G 5 HOH A 130 530 118 HOH HOH . G 5 HOH A 131 531 120 HOH HOH . G 5 HOH A 132 532 121 HOH HOH . G 5 HOH A 133 533 122 HOH HOH . G 5 HOH A 134 534 125 HOH HOH . G 5 HOH A 135 535 128 HOH HOH . G 5 HOH A 136 536 129 HOH HOH . G 5 HOH A 137 537 132 HOH HOH . G 5 HOH A 138 538 133 HOH HOH . G 5 HOH A 139 539 135 HOH HOH . G 5 HOH A 140 540 136 HOH HOH . G 5 HOH A 141 541 137 HOH HOH . G 5 HOH A 142 542 138 HOH HOH . G 5 HOH A 143 543 139 HOH HOH . G 5 HOH A 144 544 140 HOH HOH . G 5 HOH A 145 545 141 HOH HOH . G 5 HOH A 146 546 143 HOH HOH . G 5 HOH A 147 547 145 HOH HOH . G 5 HOH A 148 548 146 HOH HOH . G 5 HOH A 149 549 147 HOH HOH . G 5 HOH A 150 550 148 HOH HOH . G 5 HOH A 151 551 151 HOH HOH . G 5 HOH A 152 552 152 HOH HOH . G 5 HOH A 153 553 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 3K1 . . . E 4 9.012 19.774 -8.583 1 29.38 ? O01 3K1 304 A 1 HETATM 2 C C02 3K1 . . . E 4 9.697 20.583 -9.468 1 27.92 ? C02 3K1 304 A 1 HETATM 3 C C03 3K1 . . . E 4 10.024 20.143 -10.721 1 29.16 ? C03 3K1 304 A 1 HETATM 4 N N04 3K1 . . . E 4 10.707 20.952 -11.571 1 29.92 ? N04 3K1 304 A 1 HETATM 5 C C05 3K1 . . . E 4 11.074 22.163 -11.114 1 32.01 ? C05 3K1 304 A 1 HETATM 6 C C06 3K1 . . . E 4 11.787 23.148 -11.988 1 36.42 ? C06 3K1 304 A 1 HETATM 7 C C07 3K1 . . . E 4 12.458 24.219 -11.405 1 37.24 ? C07 3K1 304 A 1 HETATM 8 C C08 3K1 . . . E 4 13.061 25.166 -12.232 1 37.94 ? C08 3K1 304 A 1 HETATM 9 C C09 3K1 . . . E 4 12.942 25.043 -13.611 1 40.77 ? C09 3K1 304 A 1 HETATM 10 C C10 3K1 . . . E 4 12.255 23.991 -14.185 1 40.49 ? C10 3K1 304 A 1 HETATM 11 C C11 3K1 . . . E 4 11.649 23.043 -13.373 1 39.39 ? C11 3K1 304 A 1 HETATM 12 C C12 3K1 . . . E 4 13.582 26.081 -14.49 1 46.22 ? C12 3K1 304 A 1 HETATM 13 N N13 3K1 . . . E 4 13.241 26.414 -15.744 1 50.97 ? N13 3K1 304 A 1 HETATM 14 N N14 3K1 . . . E 4 14.075 27.398 -16.117 1 55.12 ? N14 3K1 304 A 1 HETATM 15 N N15 3K1 . . . E 4 14.894 27.688 -15.102 1 54.4 ? N15 3K1 304 A 1 HETATM 16 N N16 3K1 . . . E 4 14.561 26.871 -14.091 1 49.8 ? N16 3K1 304 A 1 HETATM 17 N N17 3K1 . . . E 4 10.753 22.634 -9.904 1 30.35 ? N17 3K1 304 A 1 HETATM 18 C C18 3K1 . . . E 4 10.104 21.857 -9.048 1 28.05 ? C18 3K1 304 A 1 HETATM 19 O O19 3K1 . . . E 4 9.877 22.281 -7.95 1 26.86 ? O19 3K1 304 A 1 HETATM 20 H H011 3K1 . . . E 4 9.016 20.147 -7.776 1 35.26 ? H011 3K1 304 A 1 HETATM 21 H H031 3K1 . . . E 4 9.746 19.254 -11.013 1 34.99 ? H031 3K1 304 A 1 HETATM 22 H H071 3K1 . . . E 4 12.523 24.295 -10.434 1 44.68 ? H071 3K1 304 A 1 HETATM 23 H H081 3K1 . . . E 4 13.551 25.916 -11.846 1 45.53 ? H081 3K1 304 A 1 HETATM 24 H H101 3K1 . . . E 4 12.183 23.924 -15.157 1 48.58 ? H101 3K1 304 A 1 HETATM 25 H H111 3K1 . . . E 4 11.152 22.3 -13.766 1 47.26 ? H111 3K1 304 A 1 HETATM 26 H H161 3K1 . . . E 4 14.966 26.843 -13.274 1 59.76 ? H161 3K1 304 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #