data_4W9W # _model_server_result.job_id ycuzyLcDz_Ksx7XCKWDQ2w _model_server_result.datetime_utc '2024-10-11 01:30:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4w9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4W9W # _exptl.entry_id 4W9W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 362.422 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(3-fluorophenyl)-N-[(3S)-3-piperidyl]-3-ureido-thiophene-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4W9W _cell.length_a 42.22 _cell.length_b 112.73 _cell.length_c 163.049 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4W9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details Monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C17 H19 F N4 O2 S' _chem_comp.formula_weight 362.422 _chem_comp.id YDJ _chem_comp.mon_nstd_flag . _chem_comp.name 5-(3-fluorophenyl)-N-[(3S)-3-piperidyl]-3-ureido-thiophene-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 YDJ sing 385 n y C1 C6 YDJ doub 386 n y C2 C3 YDJ doub 387 n y C3 C4 YDJ sing 388 n y C3 C7 YDJ sing 389 n y C4 C5 YDJ doub 390 n y C5 C6 YDJ sing 391 n y C5 F1 YDJ sing 392 n n C7 C8 YDJ doub 393 n y C7 S1 YDJ sing 394 n y C8 C9 YDJ sing 395 n y C9 C10 YDJ doub 396 n y C9 N3 YDJ sing 397 n n C10 S1 YDJ sing 398 n y C10 C11 YDJ sing 399 n n C11 O1 YDJ doub 400 n n C11 N1 YDJ sing 401 n n N1 C12 YDJ sing 402 n n C12 C13 YDJ sing 403 n n C12 C16 YDJ sing 404 n n C13 C14 YDJ sing 405 n n C14 C15 YDJ sing 406 n n C15 N2 YDJ sing 407 n n N2 C16 YDJ sing 408 n n N3 C17 YDJ sing 409 n n C17 O2 YDJ doub 410 n n C17 N4 YDJ sing 411 n n C1 H1 YDJ sing 412 n n C2 H2 YDJ sing 413 n n C6 H6 YDJ sing 414 n n C4 H4 YDJ sing 415 n n C8 H8 YDJ sing 416 n n N3 H3 YDJ sing 417 n n N1 HA YDJ sing 418 n n C12 H12 YDJ sing 419 n n C13 H131 YDJ sing 420 n n C13 H132 YDJ sing 421 n n C16 H161 YDJ sing 422 n n C16 H162 YDJ sing 423 n n C14 H141 YDJ sing 424 n n C14 H142 YDJ sing 425 n n C15 H151 YDJ sing 426 n n C15 H152 YDJ sing 427 n n N2 HB YDJ sing 428 n n N4 H41N YDJ sing 429 n n N4 H42N YDJ sing 430 n n # _atom_sites.entry_id 4W9W _atom_sites.fract_transf_matrix[1][1] 0.023685 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008871 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006133 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YDJ A 1 401 345 YDJ DRG . C 2 YDJ A 1 402 346 YDJ DRG . D 3 EDO A 1 403 347 EDO EDO . E 3 EDO A 1 404 348 EDO EDO . F 3 EDO A 1 405 349 EDO EDO . G 3 EDO A 1 406 350 EDO EDO . H 3 EDO A 1 407 351 EDO EDO . I 4 HOH A 1 501 583 HOH HOH . I 4 HOH A 2 502 544 HOH HOH . I 4 HOH A 3 503 470 HOH HOH . I 4 HOH A 4 504 578 HOH HOH . I 4 HOH A 5 505 528 HOH HOH . I 4 HOH A 6 506 516 HOH HOH . I 4 HOH A 7 507 469 HOH HOH . I 4 HOH A 8 508 556 HOH HOH . I 4 HOH A 9 509 429 HOH HOH . I 4 HOH A 10 510 440 HOH HOH . I 4 HOH A 11 511 475 HOH HOH . I 4 HOH A 12 512 486 HOH HOH . I 4 HOH A 13 513 526 HOH HOH . I 4 HOH A 14 514 432 HOH HOH . I 4 HOH A 15 515 417 HOH HOH . I 4 HOH A 16 516 391 HOH HOH . I 4 HOH A 17 517 364 HOH HOH . I 4 HOH A 18 518 579 HOH HOH . I 4 HOH A 19 519 408 HOH HOH . I 4 HOH A 20 520 431 HOH HOH . I 4 HOH A 21 521 386 HOH HOH . I 4 HOH A 22 522 409 HOH HOH . I 4 HOH A 23 523 553 HOH HOH . I 4 HOH A 24 524 381 HOH HOH . I 4 HOH A 25 525 505 HOH HOH . I 4 HOH A 26 526 373 HOH HOH . I 4 HOH A 27 527 403 HOH HOH . I 4 HOH A 28 528 428 HOH HOH . I 4 HOH A 29 529 488 HOH HOH . I 4 HOH A 30 530 479 HOH HOH . I 4 HOH A 31 531 455 HOH HOH . I 4 HOH A 32 532 418 HOH HOH . I 4 HOH A 33 533 561 HOH HOH . I 4 HOH A 34 534 570 HOH HOH . I 4 HOH A 35 535 414 HOH HOH . I 4 HOH A 36 536 582 HOH HOH . I 4 HOH A 37 537 419 HOH HOH . I 4 HOH A 38 538 384 HOH HOH . I 4 HOH A 39 539 489 HOH HOH . I 4 HOH A 40 540 473 HOH HOH . I 4 HOH A 41 541 438 HOH HOH . I 4 HOH A 42 542 406 HOH HOH . I 4 HOH A 43 543 378 HOH HOH . I 4 HOH A 44 544 565 HOH HOH . I 4 HOH A 45 545 464 HOH HOH . I 4 HOH A 46 546 502 HOH HOH . I 4 HOH A 47 547 491 HOH HOH . I 4 HOH A 48 548 499 HOH HOH . I 4 HOH A 49 549 436 HOH HOH . I 4 HOH A 50 550 492 HOH HOH . I 4 HOH A 51 551 434 HOH HOH . I 4 HOH A 52 552 504 HOH HOH . I 4 HOH A 53 553 511 HOH HOH . I 4 HOH A 54 554 388 HOH HOH . I 4 HOH A 55 555 423 HOH HOH . I 4 HOH A 56 556 567 HOH HOH . I 4 HOH A 57 557 546 HOH HOH . I 4 HOH A 58 558 395 HOH HOH . I 4 HOH A 59 559 520 HOH HOH . I 4 HOH A 60 560 398 HOH HOH . I 4 HOH A 61 561 531 HOH HOH . I 4 HOH A 62 562 573 HOH HOH . I 4 HOH A 63 563 568 HOH HOH . I 4 HOH A 64 564 518 HOH HOH . I 4 HOH A 65 565 453 HOH HOH . I 4 HOH A 66 566 510 HOH HOH . I 4 HOH A 67 567 539 HOH HOH . I 4 HOH A 68 568 427 HOH HOH . I 4 HOH A 69 569 532 HOH HOH . I 4 HOH A 70 570 468 HOH HOH . I 4 HOH A 71 571 498 HOH HOH . I 4 HOH A 72 572 554 HOH HOH . I 4 HOH A 73 573 562 HOH HOH . I 4 HOH A 74 574 551 HOH HOH . I 4 HOH A 75 575 483 HOH HOH . I 4 HOH A 76 576 462 HOH HOH . I 4 HOH A 77 577 352 HOH HOH . I 4 HOH A 78 578 353 HOH HOH . I 4 HOH A 79 579 354 HOH HOH . I 4 HOH A 80 580 355 HOH HOH . I 4 HOH A 81 581 356 HOH HOH . I 4 HOH A 82 582 357 HOH HOH . I 4 HOH A 83 583 358 HOH HOH . I 4 HOH A 84 584 359 HOH HOH . I 4 HOH A 85 585 360 HOH HOH . I 4 HOH A 86 586 361 HOH HOH . I 4 HOH A 87 587 362 HOH HOH . I 4 HOH A 88 588 363 HOH HOH . I 4 HOH A 89 589 365 HOH HOH . I 4 HOH A 90 590 366 HOH HOH . I 4 HOH A 91 591 367 HOH HOH . I 4 HOH A 92 592 368 HOH HOH . I 4 HOH A 93 593 369 HOH HOH . I 4 HOH A 94 594 370 HOH HOH . I 4 HOH A 95 595 371 HOH HOH . I 4 HOH A 96 596 372 HOH HOH . I 4 HOH A 97 597 374 HOH HOH . I 4 HOH A 98 598 375 HOH HOH . I 4 HOH A 99 599 376 HOH HOH . I 4 HOH A 100 600 377 HOH HOH . I 4 HOH A 101 601 379 HOH HOH . I 4 HOH A 102 602 380 HOH HOH . I 4 HOH A 103 603 382 HOH HOH . I 4 HOH A 104 604 383 HOH HOH . I 4 HOH A 105 605 385 HOH HOH . I 4 HOH A 106 606 387 HOH HOH . I 4 HOH A 107 607 389 HOH HOH . I 4 HOH A 108 608 390 HOH HOH . I 4 HOH A 109 609 392 HOH HOH . I 4 HOH A 110 610 393 HOH HOH . I 4 HOH A 111 611 394 HOH HOH . I 4 HOH A 112 612 396 HOH HOH . I 4 HOH A 113 613 397 HOH HOH . I 4 HOH A 114 614 399 HOH HOH . I 4 HOH A 115 615 400 HOH HOH . I 4 HOH A 116 616 401 HOH HOH . I 4 HOH A 117 617 402 HOH HOH . I 4 HOH A 118 618 404 HOH HOH . I 4 HOH A 119 619 405 HOH HOH . I 4 HOH A 120 620 407 HOH HOH . I 4 HOH A 121 621 410 HOH HOH . I 4 HOH A 122 622 411 HOH HOH . I 4 HOH A 123 623 412 HOH HOH . I 4 HOH A 124 624 413 HOH HOH . I 4 HOH A 125 625 415 HOH HOH . I 4 HOH A 126 626 416 HOH HOH . I 4 HOH A 127 627 420 HOH HOH . I 4 HOH A 128 628 421 HOH HOH . I 4 HOH A 129 629 422 HOH HOH . I 4 HOH A 130 630 424 HOH HOH . I 4 HOH A 131 631 425 HOH HOH . I 4 HOH A 132 632 426 HOH HOH . I 4 HOH A 133 633 430 HOH HOH . I 4 HOH A 134 634 433 HOH HOH . I 4 HOH A 135 635 435 HOH HOH . I 4 HOH A 136 636 437 HOH HOH . I 4 HOH A 137 637 439 HOH HOH . I 4 HOH A 138 638 441 HOH HOH . I 4 HOH A 139 639 442 HOH HOH . I 4 HOH A 140 640 443 HOH HOH . I 4 HOH A 141 641 444 HOH HOH . I 4 HOH A 142 642 445 HOH HOH . I 4 HOH A 143 643 446 HOH HOH . I 4 HOH A 144 644 447 HOH HOH . I 4 HOH A 145 645 448 HOH HOH . I 4 HOH A 146 646 449 HOH HOH . I 4 HOH A 147 647 450 HOH HOH . I 4 HOH A 148 648 451 HOH HOH . I 4 HOH A 149 649 452 HOH HOH . I 4 HOH A 150 650 454 HOH HOH . I 4 HOH A 151 651 456 HOH HOH . I 4 HOH A 152 652 457 HOH HOH . I 4 HOH A 153 653 458 HOH HOH . I 4 HOH A 154 654 459 HOH HOH . I 4 HOH A 155 655 460 HOH HOH . I 4 HOH A 156 656 461 HOH HOH . I 4 HOH A 157 657 463 HOH HOH . I 4 HOH A 158 658 465 HOH HOH . I 4 HOH A 159 659 466 HOH HOH . I 4 HOH A 160 660 467 HOH HOH . I 4 HOH A 161 661 471 HOH HOH . I 4 HOH A 162 662 472 HOH HOH . I 4 HOH A 163 663 474 HOH HOH . I 4 HOH A 164 664 476 HOH HOH . I 4 HOH A 165 665 477 HOH HOH . I 4 HOH A 166 666 478 HOH HOH . I 4 HOH A 167 667 480 HOH HOH . I 4 HOH A 168 668 481 HOH HOH . I 4 HOH A 169 669 482 HOH HOH . I 4 HOH A 170 670 484 HOH HOH . I 4 HOH A 171 671 485 HOH HOH . I 4 HOH A 172 672 487 HOH HOH . I 4 HOH A 173 673 490 HOH HOH . I 4 HOH A 174 674 493 HOH HOH . I 4 HOH A 175 675 494 HOH HOH . I 4 HOH A 176 676 495 HOH HOH . I 4 HOH A 177 677 496 HOH HOH . I 4 HOH A 178 678 497 HOH HOH . I 4 HOH A 179 679 500 HOH HOH . I 4 HOH A 180 680 501 HOH HOH . I 4 HOH A 181 681 503 HOH HOH . I 4 HOH A 182 682 506 HOH HOH . I 4 HOH A 183 683 507 HOH HOH . I 4 HOH A 184 684 508 HOH HOH . I 4 HOH A 185 685 509 HOH HOH . I 4 HOH A 186 686 512 HOH HOH . I 4 HOH A 187 687 513 HOH HOH . I 4 HOH A 188 688 514 HOH HOH . I 4 HOH A 189 689 515 HOH HOH . I 4 HOH A 190 690 517 HOH HOH . I 4 HOH A 191 691 519 HOH HOH . I 4 HOH A 192 692 521 HOH HOH . I 4 HOH A 193 693 522 HOH HOH . I 4 HOH A 194 694 523 HOH HOH . I 4 HOH A 195 695 524 HOH HOH . I 4 HOH A 196 696 525 HOH HOH . I 4 HOH A 197 697 527 HOH HOH . I 4 HOH A 198 698 529 HOH HOH . I 4 HOH A 199 699 530 HOH HOH . I 4 HOH A 200 700 533 HOH HOH . I 4 HOH A 201 701 534 HOH HOH . I 4 HOH A 202 702 535 HOH HOH . I 4 HOH A 203 703 536 HOH HOH . I 4 HOH A 204 704 537 HOH HOH . I 4 HOH A 205 705 538 HOH HOH . I 4 HOH A 206 706 540 HOH HOH . I 4 HOH A 207 707 541 HOH HOH . I 4 HOH A 208 708 542 HOH HOH . I 4 HOH A 209 709 543 HOH HOH . I 4 HOH A 210 710 545 HOH HOH . I 4 HOH A 211 711 547 HOH HOH . I 4 HOH A 212 712 548 HOH HOH . I 4 HOH A 213 713 549 HOH HOH . I 4 HOH A 214 714 550 HOH HOH . I 4 HOH A 215 715 552 HOH HOH . I 4 HOH A 216 716 555 HOH HOH . I 4 HOH A 217 717 557 HOH HOH . I 4 HOH A 218 718 558 HOH HOH . I 4 HOH A 219 719 559 HOH HOH . I 4 HOH A 220 720 560 HOH HOH . I 4 HOH A 221 721 563 HOH HOH . I 4 HOH A 222 722 564 HOH HOH . I 4 HOH A 223 723 566 HOH HOH . I 4 HOH A 224 724 569 HOH HOH . I 4 HOH A 225 725 571 HOH HOH . I 4 HOH A 226 726 572 HOH HOH . I 4 HOH A 227 727 574 HOH HOH . I 4 HOH A 228 728 575 HOH HOH . I 4 HOH A 229 729 576 HOH HOH . I 4 HOH A 230 730 577 HOH HOH . I 4 HOH A 231 731 580 HOH HOH . I 4 HOH A 232 732 581 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YDJ . . . B 2 9.611 -19.6 -44.452 1 42.42 ? C1 YDJ 401 A 1 HETATM 2 C C2 YDJ . . . B 2 8.452 -19.667 -45.212 1 39.3 ? C2 YDJ 401 A 1 HETATM 3 C C3 YDJ . . . B 2 8.429 -19.4 -46.56 1 41.45 ? C3 YDJ 401 A 1 HETATM 4 C C4 YDJ . . . B 2 9.621 -18.995 -47.147 1 46.87 ? C4 YDJ 401 A 1 HETATM 5 C C5 YDJ . . . B 2 10.788 -18.902 -46.399 1 50.06 ? C5 YDJ 401 A 1 HETATM 6 C C6 YDJ . . . B 2 10.787 -19.205 -45.063 1 47.52 ? C6 YDJ 401 A 1 HETATM 7 F F1 YDJ . . . B 2 11.943 -18.505 -46.99 1 59.2 ? F1 YDJ 401 A 1 HETATM 8 C C7 YDJ . . . B 2 7.291 -19.458 -47.279 1 31.6 ? C7 YDJ 401 A 1 HETATM 9 C C8 YDJ . . . B 2 6.043 -19.579 -46.734 1 31.3 ? C8 YDJ 401 A 1 HETATM 10 C C9 YDJ . . . B 2 5.041 -19.58 -47.643 1 25.15 ? C9 YDJ 401 A 1 HETATM 11 C C10 YDJ . . . B 2 5.508 -19.441 -48.929 1 26.12 ? C10 YDJ 401 A 1 HETATM 12 S S1 YDJ . . . B 2 7.244 -19.277 -48.878 1 34.54 ? S1 YDJ 401 A 1 HETATM 13 C C11 YDJ . . . B 2 4.768 -19.449 -50.05 1 31.17 ? C11 YDJ 401 A 1 HETATM 14 O O1 YDJ . . . B 2 3.541 -19.454 -50.019 1 28.91 ? O1 YDJ 401 A 1 HETATM 15 N N1 YDJ . . . B 2 5.422 -19.299 -51.213 1 33.72 ? N1 YDJ 401 A 1 HETATM 16 C C12 YDJ . . . B 2 4.715 -19.292 -52.497 1 33.13 ? C12 YDJ 401 A 1 HETATM 17 C C13 YDJ . . . B 2 5.647 -18.779 -53.619 1 35.86 ? C13 YDJ 401 A 1 HETATM 18 C C14 YDJ . . . B 2 4.897 -18.801 -54.925 1 40.04 ? C14 YDJ 401 A 1 HETATM 19 C C15 YDJ . . . B 2 4.471 -20.268 -55.201 1 38.1 ? C15 YDJ 401 A 1 HETATM 20 N N2 YDJ . . . B 2 3.606 -20.805 -54.144 1 37.81 ? N2 YDJ 401 A 1 HETATM 21 C C16 YDJ . . . B 2 4.325 -20.763 -52.851 1 34.87 ? C16 YDJ 401 A 1 HETATM 22 N N3 YDJ . . . B 2 3.724 -19.689 -47.35 1 27.54 ? N3 YDJ 401 A 1 HETATM 23 C C17 YDJ . . . B 2 3.154 -19.86 -46.122 1 26.08 ? C17 YDJ 401 A 1 HETATM 24 O O2 YDJ . . . B 2 3.737 -19.867 -45.032 1 26.78 ? O2 YDJ 401 A 1 HETATM 25 N N4 YDJ . . . B 2 1.802 -19.94 -46.111 1 26.94 ? N4 YDJ 401 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #